Wall clock time and date at job start Wed Apr 1 2020 04:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47321 * 2 1 4 4 C 1.50699 * 109.47071 * 240.00181 * 2 1 3 5 5 H 1.08006 * 119.99782 * 245.35105 * 4 2 1 6 6 C 1.37875 * 120.00374 * 65.35168 * 4 2 1 7 7 N 1.31514 * 120.00129 * 185.70683 * 6 4 2 8 8 Si 1.86799 * 119.99694 * 5.98076 * 6 4 2 9 9 H 1.48494 * 109.47312 * 269.72718 * 8 6 4 10 10 H 1.48503 * 109.47346 * 29.73135 * 8 6 4 11 11 H 1.48509 * 109.46923 * 149.72712 * 8 6 4 12 12 N 1.46501 * 109.47376 * 120.00128 * 2 1 3 13 13 C 1.34783 * 119.99701 * 275.00201 * 12 2 1 14 14 O 1.21580 * 119.99916 * 359.97438 * 13 12 2 15 15 N 1.34781 * 119.99574 * 179.97438 * 13 12 2 16 16 C 1.39939 * 119.99563 * 184.63476 * 15 13 12 17 17 C 1.38866 * 120.06965 * 323.89919 * 16 15 13 18 18 C 1.38119 * 119.92701 * 179.77284 * 17 16 15 19 19 C 1.38269 * 120.07166 * 0.51135 * 18 17 16 20 20 S 1.76207 * 119.93295 * 179.72412 * 19 18 17 21 21 O 1.42101 * 104.27472 * 26.08698 * 20 19 18 22 22 O 1.42099 * 104.27839 * 153.94733 * 20 19 18 23 23 C 1.81406 * 104.44682 * 270.02004 * 20 19 18 24 24 F 1.39894 * 109.47096 * 299.99822 * 23 20 19 25 25 F 1.39905 * 109.47015 * 59.99650 * 23 20 19 26 26 C 1.38283 * 120.14223 * 359.74406 * 19 18 17 27 27 C 1.38114 * 120.06607 * 359.97438 * 26 19 18 28 28 H 1.09003 * 109.47173 * 174.85690 * 1 2 3 29 29 H 1.08999 * 109.47327 * 294.86428 * 1 2 3 30 30 H 1.09008 * 109.46990 * 54.85990 * 1 2 3 31 31 H 0.97000 * 120.00225 * 355.25595 * 7 6 4 32 32 H 0.96993 * 120.00185 * 94.99250 * 12 2 1 33 33 H 0.96996 * 119.99656 * 4.62811 * 15 13 12 34 34 H 1.07998 * 120.03707 * 0.02562 * 17 16 15 35 35 H 1.08004 * 119.95719 * 180.25326 * 18 17 16 36 36 H 1.08998 * 109.46866 * 179.97438 * 23 20 19 37 37 H 1.08001 * 119.96862 * 180.02562 * 26 19 18 38 38 H 1.08003 * 120.03063 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5800 -1.6362 -1.1337 6 6 1.7926 -0.1785 -2.4797 7 7 2.1312 -0.8522 -3.5573 8 14 0.9939 1.5023 -2.6416 9 1 -0.4814 1.3454 -2.7050 10 1 1.3530 2.3363 -1.4666 11 1 1.4753 2.1617 -3.8822 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1615 2.4116 15 7 2.5959 -0.6538 3.4577 16 6 2.6378 0.0174 4.6849 17 6 2.9604 1.3674 4.7291 18 6 2.9963 2.0280 5.9415 19 6 2.7219 1.3442 7.1115 20 16 2.7759 2.1889 8.6569 21 8 2.5052 3.5439 8.3253 22 8 1.8957 1.4490 9.4917 23 6 4.4915 2.0009 9.2157 24 9 4.7909 0.6413 9.3530 25 9 5.3538 2.5758 8.2758 26 6 2.4055 -0.0014 7.0715 27 6 2.3622 -0.6664 5.8617 28 1 -0.3634 -1.0235 -0.0921 29 1 -0.3634 0.4321 0.9324 30 1 -0.3633 0.5915 -0.8404 31 1 2.6111 -1.6910 -3.4740 32 1 2.2489 -1.6317 1.1526 33 1 2.8897 -1.5763 3.3991 34 1 3.1789 1.9011 3.8160 35 1 3.2432 3.0789 5.9759 36 1 4.6174 2.4999 10.1766 37 1 2.1913 -0.5327 7.9870 38 1 2.1155 -1.7174 5.8312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153798788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:25 Heat of formation + Delta-G solvation = -147.245966 kcal Electronic energy + Delta-G solvation = -27888.119081 eV Core-core repulsion = 23302.025726 eV Total energy + Delta-G solvation = -4586.093354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -49.75071 -47.90921 -40.61222 -38.79377 -37.83247 -36.71380 -35.55835 -34.60119 -32.60930 -31.26894 -30.61190 -29.02287 -28.09054 -24.95682 -23.74273 -23.19381 -21.36481 -20.12512 -20.05878 -18.93768 -18.72249 -18.66926 -18.17252 -17.99534 -17.36281 -17.04620 -16.21157 -15.41754 -15.12186 -14.98541 -14.81575 -14.71005 -14.64515 -14.16865 -14.09010 -13.71160 -13.53830 -13.38835 -13.30361 -13.16637 -12.80476 -12.75222 -12.69372 -12.32380 -11.90466 -11.67330 -11.59502 -11.48085 -11.04828 -10.66489 -10.60547 -10.16686 -9.90550 -9.76080 -9.22821 -8.98205 -8.70456 -8.61559 -8.27134 -6.64381 -4.33274 -1.03346 0.55550 1.14105 1.93893 2.73140 2.81159 3.05914 3.21532 3.26566 3.31311 3.40897 3.53921 3.54623 3.60132 3.94984 4.34216 4.47233 4.57747 4.65807 5.03760 5.13313 5.15207 5.32534 5.64442 5.68423 5.91850 6.07970 6.24957 6.29117 6.34391 6.51435 6.69248 6.77763 6.91566 7.20202 7.28153 7.58974 8.13838 8.38174 8.60544 8.86325 9.37818 10.76682 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.002245 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.074061 B =12466.475591 C =12668.118500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.251 3.749 3 H 0.051 0.949 4 C -0.612 4.612 5 H 0.062 0.938 6 C 0.037 3.963 7 N -0.902 5.902 8 Si 1.050 2.950 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.707 5.707 13 C 0.692 3.308 14 O -0.577 6.577 15 N -0.695 5.695 16 C 0.247 3.753 17 C -0.143 4.143 18 C 0.007 3.993 19 C -0.685 4.685 20 S 2.479 3.521 21 O -0.891 6.891 22 O -0.894 6.894 23 C -0.213 4.213 24 F -0.165 7.165 25 F -0.163 7.163 26 C 0.007 3.993 27 C -0.176 4.176 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.269 0.731 32 H 0.392 0.608 33 H 0.409 0.591 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 1.650 26.909 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.148 3.852 3 H 0.069 0.931 4 C -0.650 4.650 5 H 0.080 0.920 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.879 3.121 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.358 5.358 13 C 0.393 3.607 14 O -0.455 6.455 15 N -0.342 5.342 16 C 0.148 3.852 17 C -0.165 4.165 18 C -0.013 4.013 19 C -0.778 4.778 20 S 2.651 3.349 21 O -0.888 6.888 22 O -0.891 6.891 23 C -0.347 4.347 24 F -0.147 7.147 25 F -0.145 7.145 26 C -0.013 4.013 27 C -0.198 4.198 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.225 0.775 33 H 0.245 0.755 34 H 0.173 0.827 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.996 4.196 26.106 26.610 hybrid contribution 1.643 -2.727 0.570 3.234 sum 4.639 1.469 26.676 27.116 Atomic orbital electron populations 1.22430 0.99085 1.00950 0.99431 1.19201 0.90300 0.94556 0.81175 0.93138 1.22137 1.41069 1.10823 0.90971 0.91963 1.25712 0.96038 1.03660 0.91513 1.70838 1.36345 1.16215 1.30180 0.83921 0.76531 0.75427 0.76238 1.20719 1.19890 1.21299 1.45621 1.68032 1.13606 1.08542 1.16172 0.78683 0.85502 0.80376 1.90898 1.56820 1.13875 1.83858 1.43040 1.67713 1.16774 1.06669 1.17936 0.90376 0.92369 0.84539 1.21549 1.01531 0.94042 0.99346 1.20826 0.90517 0.99508 0.90456 1.29625 1.23700 1.06921 1.17515 1.06770 0.75811 0.76002 0.76319 1.93660 1.79374 1.32829 1.82947 1.93644 1.55228 1.72708 1.67555 1.33131 1.16967 0.82135 1.02464 1.93084 1.94873 1.29971 1.96732 1.93104 1.72408 1.83619 1.65359 1.20626 0.90777 0.91320 0.98575 1.20978 1.06285 1.01233 0.91295 0.93088 0.94715 0.92913 0.92100 0.77490 0.75507 0.82691 0.83692 0.83111 0.83736 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.08 37.15 0.34 -3.13 16 2 C 0.25 5.77 2.14 -69.09 -0.15 5.62 16 3 H 0.05 1.28 6.05 -51.93 -0.31 0.96 16 4 C -0.61 -15.95 9.09 -34.44 -0.31 -16.27 16 5 H 0.06 1.69 7.95 -52.48 -0.42 1.27 16 6 C 0.04 1.01 5.43 -17.82 -0.10 0.92 16 7 N -0.90 -26.42 13.70 55.43 0.76 -25.66 16 8 Si 1.05 24.78 25.33 -169.99 -4.31 20.47 16 9 H -0.28 -6.28 6.81 56.52 0.38 -5.89 16 10 H -0.27 -6.23 6.35 56.52 0.36 -5.87 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.71 -13.27 5.07 -59.81 -0.30 -13.58 16 13 C 0.69 12.40 8.37 -86.91 -0.73 11.67 16 14 O -0.58 -12.30 13.50 5.30 0.07 -12.23 16 15 N -0.70 -9.11 5.34 -14.22 -0.08 -9.19 16 16 C 0.25 3.18 6.28 -83.69 -0.53 2.66 16 17 C -0.14 -1.98 8.69 -39.39 -0.34 -2.33 16 18 C 0.01 0.08 9.46 -39.61 -0.37 -0.29 16 19 C -0.68 -7.05 5.65 -39.55 -0.22 -7.28 16 20 S 2.48 20.37 5.39 -107.50 -0.58 19.79 16 21 O -0.89 -9.43 17.12 -57.54 -0.99 -10.41 16 22 O -0.89 -8.84 17.12 -57.54 -0.98 -9.83 16 23 C -0.21 -1.32 5.94 101.05 0.60 -0.72 16 24 F -0.17 -1.27 17.37 2.25 0.04 -1.23 16 25 F -0.16 -1.35 17.37 2.25 0.04 -1.31 16 26 C 0.01 0.07 9.46 -39.61 -0.37 -0.31 16 27 C -0.18 -1.80 9.97 -39.40 -0.39 -2.19 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 1.15 4.46 -51.92 -0.23 0.92 16 31 H 0.27 7.77 8.72 -40.82 -0.36 7.41 16 32 H 0.39 6.33 8.54 -40.82 -0.35 5.98 16 33 H 0.41 3.89 8.84 -40.82 -0.36 3.53 16 34 H 0.16 2.44 6.30 -52.49 -0.33 2.11 16 35 H 0.15 1.44 7.57 -52.48 -0.40 1.04 16 36 H 0.15 0.29 8.14 -51.92 -0.42 -0.13 16 37 H 0.14 1.04 7.56 -52.49 -0.40 0.64 16 38 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -35.08 345.61 -7.40 -42.48 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -3.70 Total: 7.14 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -2.58 Total: -11.64 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.38 Total: -48.43 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.90 Total: -32.47 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.08 Total: -2.55 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -4.31 Total: 20.47 kcal Atomic # 16 Polarization: 20.37 SS G_CDS: -0.58 Total: 19.79 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.08 -7.40 -42.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153798788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.771 kcal (2) G-P(sol) polarization free energy of solvation -35.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds