Wall clock time and date at job start Wed Apr 1 2020 04:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47321 * 2 1 4 4 C 1.50699 * 109.47071 * 240.00181 * 2 1 3 5 5 H 1.08006 * 119.99782 * 245.35105 * 4 2 1 6 6 C 1.37875 * 120.00374 * 65.35168 * 4 2 1 7 7 N 1.31514 * 120.00129 * 185.70683 * 6 4 2 8 8 Si 1.86799 * 119.99694 * 5.98076 * 6 4 2 9 9 H 1.48494 * 109.47312 * 269.72718 * 8 6 4 10 10 H 1.48503 * 109.47346 * 29.73135 * 8 6 4 11 11 H 1.48509 * 109.46923 * 149.72712 * 8 6 4 12 12 N 1.46501 * 109.47376 * 120.00128 * 2 1 3 13 13 C 1.34783 * 119.99701 * 275.00201 * 12 2 1 14 14 O 1.21580 * 119.99916 * 359.97438 * 13 12 2 15 15 N 1.34781 * 119.99574 * 179.97438 * 13 12 2 16 16 C 1.39939 * 119.99563 * 184.63476 * 15 13 12 17 17 C 1.38866 * 120.06965 * 323.89919 * 16 15 13 18 18 C 1.38119 * 119.92701 * 179.77284 * 17 16 15 19 19 C 1.38269 * 120.07166 * 0.51135 * 18 17 16 20 20 S 1.76207 * 119.93295 * 179.72412 * 19 18 17 21 21 O 1.42101 * 104.27472 * 26.08698 * 20 19 18 22 22 O 1.42099 * 104.27839 * 153.94733 * 20 19 18 23 23 C 1.81406 * 104.44682 * 270.02004 * 20 19 18 24 24 F 1.39894 * 109.47096 * 299.99822 * 23 20 19 25 25 F 1.39905 * 109.47015 * 59.99650 * 23 20 19 26 26 C 1.38283 * 120.14223 * 359.74406 * 19 18 17 27 27 C 1.38114 * 120.06607 * 359.97438 * 26 19 18 28 28 H 1.09003 * 109.47173 * 174.85690 * 1 2 3 29 29 H 1.08999 * 109.47327 * 294.86428 * 1 2 3 30 30 H 1.09008 * 109.46990 * 54.85990 * 1 2 3 31 31 H 0.97000 * 120.00225 * 355.25595 * 7 6 4 32 32 H 0.96993 * 120.00185 * 94.99250 * 12 2 1 33 33 H 0.96996 * 119.99656 * 4.62811 * 15 13 12 34 34 H 1.07998 * 120.03707 * 0.02562 * 17 16 15 35 35 H 1.08004 * 119.95719 * 180.25326 * 18 17 16 36 36 H 1.08998 * 109.46866 * 179.97438 * 23 20 19 37 37 H 1.08001 * 119.96862 * 180.02562 * 26 19 18 38 38 H 1.08003 * 120.03063 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5800 -1.6362 -1.1337 6 6 1.7926 -0.1785 -2.4797 7 7 2.1312 -0.8522 -3.5573 8 14 0.9939 1.5023 -2.6416 9 1 -0.4814 1.3454 -2.7050 10 1 1.3530 2.3363 -1.4666 11 1 1.4753 2.1617 -3.8822 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1615 2.4116 15 7 2.5959 -0.6538 3.4577 16 6 2.6378 0.0174 4.6849 17 6 2.9604 1.3674 4.7291 18 6 2.9963 2.0280 5.9415 19 6 2.7219 1.3442 7.1115 20 16 2.7759 2.1889 8.6569 21 8 2.5052 3.5439 8.3253 22 8 1.8957 1.4490 9.4917 23 6 4.4915 2.0009 9.2157 24 9 4.7909 0.6413 9.3530 25 9 5.3538 2.5758 8.2758 26 6 2.4055 -0.0014 7.0715 27 6 2.3622 -0.6664 5.8617 28 1 -0.3634 -1.0235 -0.0921 29 1 -0.3634 0.4321 0.9324 30 1 -0.3633 0.5915 -0.8404 31 1 2.6111 -1.6910 -3.4740 32 1 2.2489 -1.6317 1.1526 33 1 2.8897 -1.5763 3.3991 34 1 3.1789 1.9011 3.8160 35 1 3.2432 3.0789 5.9759 36 1 4.6174 2.4999 10.1766 37 1 2.1913 -0.5327 7.9870 38 1 2.1155 -1.7174 5.8312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153798788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:25 Heat of formation + Delta-G solvation = -175.202913 kcal Electronic energy + Delta-G solvation = -27889.331385 eV Core-core repulsion = 23302.025726 eV Total energy + Delta-G solvation = -4587.305658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.33561 -48.50256 -41.82195 -39.91670 -38.57021 -37.46316 -37.13182 -35.92556 -34.53693 -32.13923 -32.06052 -30.31285 -28.64762 -26.90473 -24.86376 -24.09842 -22.79651 -21.66455 -20.81530 -20.32229 -19.61119 -19.30543 -19.23220 -18.75993 -18.66751 -18.03249 -17.08118 -16.79066 -16.49971 -15.98686 -15.71719 -15.56952 -15.48034 -15.30356 -15.11343 -14.75952 -14.70272 -14.59023 -14.32169 -14.29188 -14.15010 -13.87345 -13.58428 -13.56447 -13.45307 -13.41012 -12.60494 -12.48076 -12.33900 -11.99639 -11.75133 -11.70367 -11.64408 -11.23704 -10.97598 -10.71381 -10.13151 -10.10675 -9.51036 -8.80957 -6.50167 -1.69901 -0.33811 0.26481 1.23159 1.42009 1.50806 1.53785 1.68421 1.88851 2.20833 2.39224 2.42838 2.60911 2.83312 3.02151 3.09789 3.19375 3.31610 3.73145 3.84253 4.19924 4.27446 4.40570 4.47072 4.61560 4.71307 4.76036 4.87022 4.97087 5.02038 5.14691 5.30168 5.36905 5.52686 5.54343 5.80907 5.94501 6.01629 6.47934 6.99078 7.25224 7.44445 8.59425 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.002245 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.074061 B =12466.475591 C =12668.118500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.256 3.744 3 H 0.028 0.972 4 C -0.604 4.604 5 H 0.044 0.956 6 C -0.009 4.009 7 N -0.934 5.934 8 Si 1.080 2.920 9 H -0.258 1.258 10 H -0.265 1.265 11 H -0.287 1.287 12 N -0.708 5.708 13 C 0.695 3.305 14 O -0.614 6.614 15 N -0.676 5.676 16 C 0.220 3.780 17 C -0.168 4.168 18 C -0.002 4.002 19 C -0.692 4.692 20 S 2.504 3.496 21 O -0.918 6.918 22 O -0.909 6.909 23 C -0.199 4.199 24 F -0.169 7.169 25 F -0.173 7.173 26 C 0.005 3.995 27 C -0.164 4.164 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.258 0.742 32 H 0.405 0.595 33 H 0.427 0.573 34 H 0.127 0.873 35 H 0.153 0.847 36 H 0.207 0.793 37 H 0.175 0.825 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 1.349 30.150 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.151 3.849 3 H 0.046 0.954 4 C -0.642 4.642 5 H 0.062 0.938 6 C -0.209 4.209 7 N -0.570 5.570 8 Si 0.904 3.096 9 H -0.183 1.183 10 H -0.191 1.191 11 H -0.214 1.214 12 N -0.360 5.360 13 C 0.395 3.605 14 O -0.494 6.494 15 N -0.325 5.325 16 C 0.123 3.877 17 C -0.190 4.190 18 C -0.022 4.022 19 C -0.782 4.782 20 S 2.677 3.323 21 O -0.915 6.915 22 O -0.906 6.906 23 C -0.337 4.337 24 F -0.150 7.150 25 F -0.155 7.155 26 C -0.015 4.015 27 C -0.186 4.186 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.240 0.760 33 H 0.266 0.734 34 H 0.145 0.855 35 H 0.171 0.829 36 H 0.223 0.777 37 H 0.192 0.808 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.789 3.832 29.371 29.751 hybrid contribution 1.821 -2.656 -0.220 3.228 sum 4.610 1.175 29.151 29.537 Atomic orbital electron populations 1.22313 0.97629 1.01465 0.99801 1.18834 0.91299 0.93194 0.81563 0.95369 1.22314 1.39686 1.09921 0.92275 0.93772 1.26823 0.96425 1.05966 0.91655 1.70936 1.38383 1.16497 1.31176 0.83536 0.77329 0.72401 0.76376 1.18299 1.19051 1.21385 1.45265 1.68609 1.14107 1.08026 1.16190 0.78388 0.84979 0.80927 1.90881 1.58303 1.15590 1.84598 1.42644 1.66944 1.17353 1.05567 1.18141 0.92237 0.92342 0.85004 1.21451 1.03387 0.94943 0.99170 1.20927 0.90812 1.00101 0.90376 1.30074 1.22278 1.07532 1.18302 1.06102 0.76483 0.74749 0.74998 1.93633 1.80796 1.33991 1.83098 1.93625 1.57015 1.72758 1.67199 1.33023 1.14111 0.82296 1.04249 1.93086 1.94668 1.30539 1.96756 1.93098 1.72463 1.83795 1.66141 1.21092 0.89630 0.91213 0.99564 1.21309 1.04483 1.02622 0.90154 0.92351 0.93811 0.93170 0.93232 0.76003 0.73370 0.85547 0.82909 0.77695 0.80769 0.81280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.48 9.08 71.98 0.65 -5.83 16 2 C 0.26 11.76 2.14 44.24 0.09 11.86 16 3 H 0.03 1.44 6.05 -2.39 -0.01 1.43 16 4 C -0.60 -31.82 9.09 25.60 0.23 -31.59 16 5 H 0.04 2.44 7.95 -2.91 -0.02 2.41 16 6 C -0.01 -0.48 5.43 84.65 0.46 -0.02 16 7 N -0.93 -55.74 13.70 21.45 0.29 -55.45 16 8 Si 1.08 49.88 25.33 68.60 1.74 51.62 16 9 H -0.26 -10.92 6.81 99.48 0.68 -10.24 16 10 H -0.27 -11.84 6.35 99.48 0.63 -11.21 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 N -0.71 -26.40 5.07 -461.42 -2.34 -28.74 16 13 C 0.69 24.86 8.37 179.05 1.50 26.36 16 14 O -0.61 -26.70 13.50 -3.97 -0.05 -26.76 16 15 N -0.68 -17.18 5.34 -317.18 -1.69 -18.88 16 16 C 0.22 5.51 6.28 38.15 0.24 5.75 16 17 C -0.17 -4.77 8.69 22.39 0.19 -4.57 16 18 C 0.00 -0.06 9.46 22.25 0.21 0.15 16 19 C -0.69 -13.10 5.65 22.29 0.13 -12.98 16 20 S 2.50 35.38 5.39 -56.49 -0.30 35.08 16 21 O -0.92 -18.14 17.12 -127.65 -2.19 -20.33 16 22 O -0.91 -15.51 17.12 -127.65 -2.19 -17.69 16 23 C -0.20 -1.78 5.94 113.37 0.67 -1.11 16 24 F -0.17 -2.00 17.37 44.97 0.78 -1.21 16 25 F -0.17 -2.43 17.37 44.97 0.78 -1.65 16 26 C 0.00 0.08 9.46 22.25 0.21 0.29 16 27 C -0.16 -2.94 9.97 22.39 0.22 -2.72 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 2.12 4.46 -2.38 -0.01 2.11 16 31 H 0.26 15.40 8.72 -92.71 -0.81 14.59 16 32 H 0.40 12.83 8.54 -92.71 -0.79 12.04 16 33 H 0.43 7.42 8.84 -92.71 -0.82 6.60 16 34 H 0.13 4.27 6.30 -2.91 -0.02 4.26 16 35 H 0.15 3.11 7.57 -2.91 -0.02 3.09 16 36 H 0.21 -0.24 8.14 -2.39 -0.02 -0.25 16 37 H 0.17 1.83 7.56 -2.91 -0.02 1.81 16 38 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -77.48 345.61 -0.95 -78.43 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.60 Total: 20.00 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 4.82 Total: -14.42 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -3.74 Total: -103.07 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -4.42 Total: -64.78 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 1.56 Total: -2.86 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 1.74 Total: 51.62 kcal Atomic # 16 Polarization: 35.38 SS G_CDS: -0.30 Total: 35.08 kcal Total: -77.48 -0.95 -78.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153798788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.774 kcal (2) G-P(sol) polarization free energy of solvation -77.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds