Wall clock time and date at job start Wed Apr 1 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99925 * 2 1 4 4 H 1.48495 * 109.46941 * 239.99738 * 3 2 1 5 5 H 1.48495 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46812 * 119.99992 * 3 2 1 7 7 C 1.37880 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99735 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46948 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54275 * 68.37271 * 11 10 9 13 13 O 1.42101 * 110.54298 * 291.62373 * 11 10 9 14 14 N 1.65599 * 104.44825 * 179.97438 * 11 10 9 15 15 C 1.34774 * 120.00089 * 65.00200 * 14 11 10 16 16 O 1.21722 * 119.99607 * 359.97438 * 15 14 11 17 17 C 1.46583 * 120.00275 * 179.97438 * 15 14 11 18 18 C 1.38051 * 126.00893 * 180.02562 * 17 15 14 19 19 C 1.39358 * 107.44147 * 180.02562 * 18 17 15 20 20 C 1.37822 * 107.65596 * 359.97438 * 19 18 17 21 21 C 1.47807 * 125.82190 * 179.97438 * 20 19 18 22 22 C 1.39599 * 120.14000 * 179.74753 * 21 20 19 23 23 C 1.37961 * 119.84480 * 179.76793 * 22 21 20 24 24 C 1.38360 * 120.15039 * 0.51356 * 23 22 21 25 25 C 1.38368 * 120.29353 * 359.74287 * 24 23 22 26 26 C 1.37953 * 120.14516 * 359.97438 * 25 24 23 27 27 N 1.36407 * 108.35157 * 359.73556 * 20 19 18 28 28 H 0.96996 * 125.72129 * 180.30100 * 27 20 19 29 29 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47322 * 59.99852 * 9 7 2 31 31 H 1.09000 * 109.47116 * 299.99484 * 9 7 2 32 32 H 1.09004 * 109.47149 * 59.99839 * 10 9 7 33 33 H 1.09000 * 109.46805 * 299.99691 * 10 9 7 34 34 H 0.96999 * 120.00046 * 244.99555 * 14 11 10 35 35 H 1.08006 * 126.27835 * 359.96741 * 18 17 15 36 36 H 1.08000 * 126.16915 * 179.97438 * 19 18 17 37 37 H 1.07995 * 120.07736 * 0.02562 * 22 21 20 38 38 H 1.08001 * 119.92470 * 180.25454 * 23 22 21 39 39 H 1.07990 * 119.85192 * 179.76287 * 24 23 22 40 40 H 1.08000 * 119.92488 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.07585 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.6638 -5.4201 -1.2354 13 8 0.6647 -5.4194 1.2386 14 7 2.5205 -6.3927 0.0005 15 6 3.3477 -6.5124 1.0578 16 8 3.2261 -5.7678 2.0130 17 6 4.3938 -7.5392 1.0573 18 6 5.3041 -7.7710 2.0691 19 6 6.1157 -8.8298 1.6663 20 6 5.6914 -9.2302 0.4177 21 6 6.2754 -10.3260 -0.3841 22 6 5.7463 -10.6357 -1.6383 23 6 6.2992 -11.6566 -2.3837 24 6 7.3687 -12.3797 -1.8862 25 6 7.8944 -12.0814 -0.6415 26 6 7.3547 -11.0593 0.1116 27 7 4.6373 -8.4463 0.0504 28 1 4.1435 -8.5147 -0.7816 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.8720 -3.6044 0.8905 33 1 2.8719 -3.6044 -0.8895 34 1 2.6175 -6.9859 -0.7608 35 1 5.3748 -7.2301 3.0013 36 1 6.9301 -9.2591 2.2309 37 1 4.9089 -10.0747 -2.0260 38 1 5.8935 -11.8945 -3.3559 39 1 7.7952 -13.1803 -2.4721 40 1 8.7296 -12.6495 -0.2592 41 1 7.7662 -10.8271 1.0828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181280353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:16 Heat of formation + Delta-G solvation = -48.027682 kcal Electronic energy + Delta-G solvation = -26716.335785 eV Core-core repulsion = 22688.774389 eV Total energy + Delta-G solvation = -4027.561397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77523 -39.76935 -39.00035 -36.75597 -35.67923 -34.63447 -33.91062 -32.49596 -31.96034 -31.19742 -31.02011 -28.65684 -25.64839 -24.48201 -23.24438 -22.44199 -21.69557 -21.00173 -20.31072 -19.61613 -19.19092 -17.69321 -17.41530 -16.54910 -16.30057 -15.94689 -15.38909 -15.34131 -15.20992 -14.98322 -14.57118 -14.48835 -14.31588 -14.10776 -13.83789 -13.46693 -13.12397 -13.11333 -12.89368 -12.55231 -12.40892 -11.83839 -11.80642 -11.77066 -11.67197 -11.51353 -11.08527 -11.03141 -10.95684 -10.59322 -10.42010 -10.35472 -9.95379 -9.72792 -9.47380 -9.42865 -9.20982 -8.49613 -8.10018 -6.12143 -4.17708 0.27632 0.43346 0.89318 1.26863 2.35980 2.49978 2.62380 2.93937 3.28821 3.33250 3.35530 3.41803 3.95137 4.10379 4.18717 4.31883 4.37460 4.43913 4.56688 4.62527 4.73859 4.85765 4.93465 4.95626 5.05679 5.23023 5.34895 5.48170 5.55573 5.61640 5.69576 5.73890 5.90967 5.93344 6.01136 6.27954 6.42363 6.44263 6.46128 6.59402 6.89615 7.26876 7.33694 7.37004 7.80680 8.16161 8.84928 9.46755 10.98854 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.017964 B = 0.002133 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.306711 B =13123.161726 C =13372.448611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.574 4.574 11 S 2.566 3.434 12 O -0.953 6.953 13 O -0.934 6.934 14 N -1.062 6.062 15 C 0.608 3.392 16 O -0.475 6.475 17 C -0.049 4.049 18 C -0.090 4.090 19 C -0.184 4.184 20 C 0.091 3.909 21 C -0.022 4.022 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.113 4.113 26 C -0.097 4.097 27 N -0.531 5.531 28 H 0.417 0.583 29 H 0.266 0.734 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.420 0.580 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.580 -26.274 -3.274 31.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.708 4.708 11 S 2.666 3.334 12 O -0.944 6.944 13 O -0.924 6.924 14 N -0.821 5.821 15 C 0.396 3.604 16 O -0.345 6.345 17 C -0.164 4.164 18 C -0.117 4.117 19 C -0.209 4.209 20 C -0.026 4.026 21 C -0.023 4.023 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.131 4.131 26 C -0.116 4.116 27 N -0.127 5.127 28 H 0.255 0.745 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.254 0.746 35 H 0.175 0.825 36 H 0.168 0.832 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.244 -25.797 -2.658 30.082 hybrid contribution 0.762 0.776 -1.006 1.482 sum 16.006 -25.021 -3.664 29.928 Atomic orbital electron populations 1.69945 1.06101 1.27355 1.49418 1.25069 0.95012 0.99560 0.94851 0.86492 0.79462 0.82362 0.78742 1.20104 1.21071 1.19982 1.20932 0.93083 0.89540 1.52364 0.91980 1.18997 0.92602 0.90269 0.99063 1.30340 1.13719 1.15867 1.10922 1.06777 0.74846 0.77222 0.74531 1.93591 1.70346 1.85322 1.45143 1.93607 1.70080 1.84290 1.44408 1.55452 1.49640 1.50612 1.26401 1.16890 0.79444 0.82700 0.81413 1.91070 1.69173 1.42051 1.32251 1.20275 1.04229 0.98873 0.93035 1.21351 0.94056 0.97834 0.98434 1.21137 1.03826 1.00779 0.95117 1.19169 0.91957 0.95467 0.95983 1.18087 0.96430 0.94251 0.93564 1.21140 1.00153 0.98490 0.94036 1.21071 0.96485 0.95577 0.99878 1.21287 0.96570 0.99724 0.96114 1.21129 0.99981 0.97375 0.94662 1.21144 0.95097 0.95112 1.00204 1.41986 1.26709 1.26685 1.17327 0.74530 0.92446 0.94765 0.94483 0.84866 0.86009 0.74639 0.82467 0.83206 0.86435 0.85605 0.85783 0.85436 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 10 C -0.57 -11.39 5.82 37.16 0.22 -11.18 16 11 S 2.57 46.47 5.11 -107.50 -0.55 45.92 16 12 O -0.95 -18.59 18.08 -57.54 -1.04 -19.63 16 13 O -0.93 -20.46 17.04 -64.78 -1.10 -21.56 16 14 N -1.06 -13.76 5.60 30.24 0.17 -13.59 16 15 C 0.61 8.64 7.52 -12.90 -0.10 8.54 16 16 O -0.47 -8.52 14.97 -11.93 -0.18 -8.70 16 17 C -0.05 -0.56 7.04 -81.94 -0.58 -1.14 16 18 C -0.09 -0.96 10.60 -39.23 -0.42 -1.38 16 19 C -0.18 -1.60 10.22 -39.32 -0.40 -2.00 16 20 C 0.09 0.77 6.93 -82.07 -0.57 0.21 16 21 C -0.02 -0.17 5.87 -104.97 -0.62 -0.78 16 22 C -0.12 -0.78 9.70 -39.18 -0.38 -1.16 16 23 C -0.11 -0.64 10.03 -39.64 -0.40 -1.04 16 24 C -0.12 -0.63 10.04 -39.49 -0.40 -1.02 16 25 C -0.11 -0.61 10.03 -39.64 -0.40 -1.00 16 26 C -0.10 -0.60 9.56 -39.18 -0.37 -0.98 16 27 N -0.53 -4.49 5.90 -5.81 -0.03 -4.52 16 28 H 0.42 2.35 7.24 -40.82 -0.30 2.05 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.13 2.61 7.19 -51.92 -0.37 2.23 16 33 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 34 H 0.42 3.61 7.89 -34.47 -0.27 3.34 16 35 H 0.16 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.15 0.92 7.26 -52.49 -0.38 0.54 16 37 H 0.12 0.56 7.14 -52.49 -0.37 0.19 16 38 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.12 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 41 H 0.13 0.61 6.98 -52.48 -0.37 0.24 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -37.98 370.17 -10.96 -48.94 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.56 Total: 2.60 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -4.96 Total: -25.59 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.87 Total: -43.98 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -2.32 Total: -49.89 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 46.47 SS G_CDS: -0.55 Total: 45.92 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.98 -10.96 -48.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181280353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.914 kcal (2) G-P(sol) polarization free energy of solvation -37.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds