Wall clock time and date at job start Wed Apr 1 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99925 * 2 1 4 4 H 1.48495 * 109.46941 * 239.99738 * 3 2 1 5 5 H 1.48495 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46812 * 119.99992 * 3 2 1 7 7 C 1.37880 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99735 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46948 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54275 * 68.37271 * 11 10 9 13 13 O 1.42101 * 110.54298 * 291.62373 * 11 10 9 14 14 N 1.65599 * 104.44825 * 179.97438 * 11 10 9 15 15 C 1.34774 * 120.00089 * 65.00200 * 14 11 10 16 16 O 1.21722 * 119.99607 * 359.97438 * 15 14 11 17 17 C 1.46583 * 120.00275 * 179.97438 * 15 14 11 18 18 C 1.38051 * 126.00893 * 180.02562 * 17 15 14 19 19 C 1.39358 * 107.44147 * 180.02562 * 18 17 15 20 20 C 1.37822 * 107.65596 * 359.97438 * 19 18 17 21 21 C 1.47807 * 125.82190 * 179.97438 * 20 19 18 22 22 C 1.39599 * 120.14000 * 179.74753 * 21 20 19 23 23 C 1.37961 * 119.84480 * 179.76793 * 22 21 20 24 24 C 1.38360 * 120.15039 * 0.51356 * 23 22 21 25 25 C 1.38368 * 120.29353 * 359.74287 * 24 23 22 26 26 C 1.37953 * 120.14516 * 359.97438 * 25 24 23 27 27 N 1.36407 * 108.35157 * 359.73556 * 20 19 18 28 28 H 0.96996 * 125.72129 * 180.30100 * 27 20 19 29 29 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47322 * 59.99852 * 9 7 2 31 31 H 1.09000 * 109.47116 * 299.99484 * 9 7 2 32 32 H 1.09004 * 109.47149 * 59.99839 * 10 9 7 33 33 H 1.09000 * 109.46805 * 299.99691 * 10 9 7 34 34 H 0.96999 * 120.00046 * 244.99555 * 14 11 10 35 35 H 1.08006 * 126.27835 * 359.96741 * 18 17 15 36 36 H 1.08000 * 126.16915 * 179.97438 * 19 18 17 37 37 H 1.07995 * 120.07736 * 0.02562 * 22 21 20 38 38 H 1.08001 * 119.92470 * 180.25454 * 23 22 21 39 39 H 1.07990 * 119.85192 * 179.76287 * 24 23 22 40 40 H 1.08000 * 119.92488 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.07585 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.6638 -5.4201 -1.2354 13 8 0.6647 -5.4194 1.2386 14 7 2.5205 -6.3927 0.0005 15 6 3.3477 -6.5124 1.0578 16 8 3.2261 -5.7678 2.0130 17 6 4.3938 -7.5392 1.0573 18 6 5.3041 -7.7710 2.0691 19 6 6.1157 -8.8298 1.6663 20 6 5.6914 -9.2302 0.4177 21 6 6.2754 -10.3260 -0.3841 22 6 5.7463 -10.6357 -1.6383 23 6 6.2992 -11.6566 -2.3837 24 6 7.3687 -12.3797 -1.8862 25 6 7.8944 -12.0814 -0.6415 26 6 7.3547 -11.0593 0.1116 27 7 4.6373 -8.4463 0.0504 28 1 4.1435 -8.5147 -0.7816 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.8720 -3.6044 0.8905 33 1 2.8719 -3.6044 -0.8895 34 1 2.6175 -6.9859 -0.7608 35 1 5.3748 -7.2301 3.0013 36 1 6.9301 -9.2591 2.2309 37 1 4.9089 -10.0747 -2.0260 38 1 5.8935 -11.8945 -3.3559 39 1 7.7952 -13.1803 -2.4721 40 1 8.7296 -12.6495 -0.2592 41 1 7.7662 -10.8271 1.0828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181280353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:15 Heat of formation + Delta-G solvation = -74.918971 kcal Electronic energy + Delta-G solvation = -26717.501879 eV Core-core repulsion = 22688.774389 eV Total energy + Delta-G solvation = -4028.727491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55273 -40.76662 -39.55525 -38.35200 -37.30286 -36.00203 -35.79379 -33.20552 -33.02779 -32.56260 -31.54189 -29.38715 -27.66780 -25.32092 -23.76914 -23.63847 -23.07728 -21.72880 -21.23855 -20.59644 -20.32987 -19.26845 -18.41408 -18.09034 -17.43660 -16.99184 -16.63455 -16.56376 -16.47599 -16.04366 -15.78763 -15.31710 -15.16900 -15.10147 -14.68212 -14.49850 -14.30283 -14.05802 -13.80893 -13.65710 -13.59758 -13.47054 -13.43652 -13.32730 -12.94626 -12.87196 -12.39666 -12.28752 -12.22434 -12.11328 -11.90022 -11.83974 -11.69552 -11.13020 -10.65667 -10.49073 -10.14879 -9.87487 -8.76066 -8.28063 -6.42146 -1.09383 -0.35959 0.47250 0.49995 1.27127 1.39667 1.43689 1.51799 1.67660 1.81543 2.00832 2.36044 2.50808 2.96369 2.97269 3.05220 3.23816 3.54966 3.72788 3.90661 3.95856 3.99431 4.06021 4.20235 4.28182 4.34771 4.55198 4.58913 4.66261 4.84294 5.01324 5.08640 5.12874 5.20347 5.20624 5.28168 5.51778 5.52838 5.62298 5.65206 5.72574 5.80837 6.02420 6.03876 6.26582 6.29969 6.69846 7.27519 8.83994 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.017964 B = 0.002133 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.306711 B =13123.161726 C =13372.448611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.003 4.003 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.023 3.977 10 C -0.577 4.577 11 S 2.604 3.396 12 O -0.966 6.966 13 O -0.973 6.973 14 N -1.041 6.041 15 C 0.609 3.391 16 O -0.519 6.519 17 C -0.075 4.075 18 C -0.094 4.094 19 C -0.192 4.192 20 C 0.110 3.890 21 C -0.046 4.046 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.101 4.101 27 N -0.522 5.522 28 H 0.429 0.571 29 H 0.268 0.732 30 H 0.017 0.983 31 H 0.007 0.993 32 H 0.135 0.865 33 H 0.152 0.848 34 H 0.442 0.558 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.428 -28.081 -4.433 34.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.092 0.908 9 C -0.016 4.016 10 C -0.710 4.710 11 S 2.702 3.298 12 O -0.956 6.956 13 O -0.963 6.963 14 N -0.806 5.806 15 C 0.400 3.600 16 O -0.393 6.393 17 C -0.190 4.190 18 C -0.121 4.121 19 C -0.215 4.215 20 C -0.009 4.009 21 C -0.047 4.047 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.138 4.138 26 C -0.120 4.120 27 N -0.119 5.119 28 H 0.269 0.731 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.025 0.975 32 H 0.154 0.846 33 H 0.170 0.830 34 H 0.280 0.720 35 H 0.174 0.826 36 H 0.192 0.808 37 H 0.147 0.853 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 18.088 -27.614 -3.866 33.237 hybrid contribution -0.001 1.080 -0.714 1.295 sum 18.087 -26.534 -4.580 32.437 Atomic orbital electron populations 1.70088 1.07962 1.28482 1.50535 1.26123 0.95946 1.03865 0.94261 0.85338 0.78143 0.77185 0.79429 1.18548 1.20713 1.19099 1.21430 0.93911 0.90697 1.52005 0.90833 1.18837 0.93415 0.92573 0.96784 1.30237 1.12906 1.15320 1.12579 1.05352 0.74460 0.76717 0.73222 1.93567 1.71124 1.85498 1.45460 1.93557 1.71603 1.84841 1.46339 1.54832 1.48543 1.49797 1.27389 1.17250 0.79483 0.82686 0.80570 1.91048 1.70423 1.44000 1.33822 1.19805 1.04560 0.99862 0.94757 1.21566 0.94069 0.98218 0.98283 1.21432 1.04345 1.00286 0.95464 1.19501 0.90863 0.94727 0.95809 1.18177 0.97616 0.94746 0.94191 1.21395 1.00535 0.98836 0.93885 1.21357 0.96734 0.95432 1.00620 1.21650 0.96086 0.99775 0.96250 1.21444 1.00498 0.97244 0.94661 1.21414 0.94647 0.94994 1.00922 1.41923 1.26789 1.25922 1.17287 0.73093 0.92280 0.96496 0.97516 0.84632 0.83027 0.71990 0.82617 0.80769 0.85255 0.84023 0.83818 0.83351 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.98 44.10 29.54 68.60 2.03 46.12 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 8 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.02 1.23 4.98 29.85 0.15 1.38 16 10 C -0.58 -23.28 5.82 71.99 0.42 -22.86 16 11 S 2.60 95.59 5.11 -56.49 -0.29 95.30 16 12 O -0.97 -37.60 18.08 -127.65 -2.31 -39.91 16 13 O -0.97 -44.06 17.04 -120.73 -2.06 -46.12 16 14 N -1.04 -26.41 5.60 -176.44 -0.99 -27.39 16 15 C 0.61 17.29 7.52 86.42 0.65 17.94 16 16 O -0.52 -19.12 14.97 11.93 0.18 -18.94 16 17 C -0.08 -1.65 7.04 40.36 0.28 -1.37 16 18 C -0.09 -1.93 10.60 22.49 0.24 -1.69 16 19 C -0.19 -2.96 10.22 22.44 0.23 -2.73 16 20 C 0.11 1.64 6.93 40.87 0.28 1.92 16 21 C -0.05 -0.58 5.87 -20.09 -0.12 -0.70 16 22 C -0.13 -1.36 9.70 22.53 0.22 -1.15 16 23 C -0.12 -1.09 10.03 22.23 0.22 -0.86 16 24 C -0.12 -0.91 10.04 22.33 0.22 -0.69 16 25 C -0.12 -0.93 10.03 22.23 0.22 -0.71 16 26 C -0.10 -0.99 9.56 22.53 0.22 -0.78 16 27 N -0.52 -7.95 5.90 -172.30 -1.02 -8.97 16 28 H 0.43 3.96 7.24 -92.71 -0.67 3.29 16 29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.14 5.42 7.19 -2.39 -0.02 5.41 16 33 H 0.15 5.07 8.14 -2.39 -0.02 5.05 16 34 H 0.44 6.95 7.89 -96.75 -0.76 6.19 16 35 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.17 1.68 7.26 -2.91 -0.02 1.66 16 37 H 0.13 0.94 7.14 -2.91 -0.02 0.91 16 38 H 0.14 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.14 0.47 8.06 -2.92 -0.02 0.45 16 40 H 0.15 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.14 0.92 6.98 -2.91 -0.02 0.90 16 Total: -1.00 -84.01 370.17 -0.57 -84.58 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -0.34 Total: 14.85 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 3.93 Total: -42.60 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -1.72 Total: -93.28 kcal Atomic # 8 Polarization: -100.78 SS G_CDS: -4.19 Total: -104.97 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 95.59 SS G_CDS: -0.29 Total: 95.30 kcal Total: -84.01 -0.57 -84.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181280353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.662 kcal (2) G-P(sol) polarization free energy of solvation -84.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds