Wall clock time and date at job start Wed Apr 1 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47115 * 255.60705 * 3 2 1 5 5 N 1.46494 * 109.47275 * 180.02562 * 4 3 2 6 6 C 1.46493 * 120.00444 * 275.27738 * 5 4 3 7 7 C 1.50701 * 109.47177 * 274.72646 * 6 5 4 8 8 H 1.07996 * 119.99972 * 359.97438 * 7 6 5 9 9 C 1.37887 * 119.99644 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00243 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99651 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47396 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47335 * 120.00090 * 11 9 7 14 14 H 1.48506 * 109.47160 * 239.99920 * 11 9 7 15 15 S 1.65608 * 119.99583 * 95.00419 * 5 4 3 16 16 O 1.42100 * 106.40059 * 203.54152 * 15 5 4 17 17 O 1.42096 * 106.40050 * 336.46185 * 15 5 4 18 18 C 1.76202 * 107.21643 * 90.00209 * 15 5 4 19 19 C 1.32961 * 119.90064 * 254.99583 * 18 15 5 20 20 C 1.47818 * 118.34511 * 181.48928 * 19 18 15 21 21 C 1.38983 * 121.59390 * 193.02082 * 20 19 18 22 22 C 1.38147 * 119.60904 * 179.61880 * 21 20 19 23 23 C 1.38423 * 120.28299 * 0.42826 * 22 21 20 24 24 C 1.38326 * 120.51429 * 0.50738 * 23 22 21 25 25 C 1.38264 * 119.82972 * 359.77783 * 24 23 22 26 26 O 1.35770 * 121.30266 * 177.92944 * 25 24 23 27 27 C 1.43039 * 117.21365 * 146.96781 * 26 25 24 28 28 H 1.09000 * 109.46705 * 135.61464 * 3 2 1 29 29 H 1.08990 * 109.47641 * 15.61109 * 3 2 1 30 30 H 1.09005 * 109.47025 * 60.00092 * 4 3 2 31 31 H 1.09001 * 109.47382 * 300.01119 * 4 3 2 32 32 H 1.09004 * 109.46868 * 34.72321 * 6 5 4 33 33 H 1.09004 * 109.47439 * 154.72444 * 6 5 4 34 34 H 0.97001 * 119.99910 * 180.02562 * 10 9 7 35 35 H 1.07998 * 120.82968 * 1.47149 * 19 18 15 36 36 H 1.08001 * 120.19764 * 359.64904 * 21 20 19 37 37 H 1.07995 * 119.85764 * 180.40703 * 22 21 20 38 38 H 1.07998 * 119.74167 * 180.47719 * 23 22 21 39 39 H 1.07990 * 120.08652 * 179.76193 * 24 23 22 40 40 H 1.08991 * 109.44731 * 287.08201 * 27 26 25 41 41 H 1.08998 * 109.17264 * 167.61630 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3595 1.3972 5 7 4.5828 0.3607 1.3971 6 6 5.3164 -0.8913 1.5979 7 6 5.4666 -1.1544 3.0741 8 1 5.0569 -0.4584 3.7911 9 6 6.1271 -2.2838 3.5094 10 7 6.6256 -3.1316 2.6362 11 14 6.3126 -2.6103 5.3392 12 1 5.6682 -1.5136 6.1056 13 1 5.6628 -3.9012 5.6801 14 1 7.7550 -2.6752 5.6867 15 16 5.4095 1.7765 1.1633 16 8 6.6927 1.4153 0.6712 17 8 4.5269 2.6463 0.4678 18 6 5.6698 2.4967 2.7502 19 6 4.9453 3.5452 3.1292 20 6 5.2151 4.1428 4.4540 21 6 4.3411 5.0553 5.0328 22 6 4.6299 5.5825 6.2766 23 6 5.7868 5.2121 6.9403 24 6 6.6722 4.3194 6.3635 25 6 6.3989 3.7883 5.1166 26 8 7.2666 2.9421 4.5047 27 6 6.7079 1.9190 3.6757 28 1 2.9709 0.7353 -0.7189 29 1 2.9718 -0.9888 -0.2765 30 1 2.7548 -0.3751 2.1162 31 1 2.7539 1.3490 1.6738 32 1 4.7673 -1.7121 1.1365 33 1 6.3028 -0.8118 1.1408 34 1 7.0899 -3.9263 2.9425 35 1 4.1789 3.9503 2.4850 36 1 3.4412 5.3501 4.5135 37 1 3.9502 6.2868 6.7330 38 1 6.0001 5.6238 7.9157 39 1 7.5746 4.0382 6.8858 40 1 6.2456 1.1564 4.3023 41 1 7.5023 1.4638 3.0845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187962325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:41 Heat of formation + Delta-G solvation = -38.433912 kcal Electronic energy + Delta-G solvation = -28583.405884 eV Core-core repulsion = 24556.260505 eV Total energy + Delta-G solvation = -4027.145380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61011 -37.51992 -37.25834 -36.85797 -35.78232 -35.47538 -34.40091 -32.91474 -30.81709 -30.61308 -30.47588 -27.11032 -25.98821 -23.92485 -23.77912 -22.68979 -22.24820 -19.86272 -18.19276 -18.01294 -17.63367 -17.17484 -16.86569 -16.54039 -16.06054 -15.66810 -15.45650 -14.95499 -14.72967 -14.64936 -14.49895 -13.93537 -13.67487 -13.59968 -13.51010 -12.77834 -12.75394 -12.62867 -12.42022 -12.36637 -12.08611 -11.82818 -11.81485 -11.77848 -11.55882 -11.50248 -11.27699 -11.22352 -11.06597 -10.71945 -10.66273 -10.42006 -10.32061 -10.08089 -9.94333 -8.89194 -8.62867 -8.35670 -8.13027 -6.25346 -4.32941 0.38587 0.81525 1.23678 1.91879 2.85048 2.92343 3.16860 3.26413 3.26908 3.36936 3.38280 3.69753 4.00398 4.23627 4.25659 4.39514 4.52488 4.68972 4.84813 4.98099 5.04750 5.09727 5.10589 5.21412 5.23081 5.42309 5.50146 5.58510 5.68431 5.70764 5.74894 5.88022 6.06639 6.10447 6.14032 6.27684 6.28474 6.41388 6.60654 7.07437 7.22450 7.36446 7.37560 7.67900 7.70381 7.97142 8.71585 9.34756 10.82437 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.007827 B = 0.005127 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.428064 B = 5459.522960 C = 7367.100917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.222 3.778 3 C -0.053 4.053 4 C 0.137 3.863 5 N -0.979 5.979 6 C 0.239 3.761 7 C -0.550 4.550 8 H 0.064 0.936 9 C 0.071 3.929 10 N -0.883 5.883 11 Si 0.887 3.113 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.280 1.280 15 S 2.690 3.310 16 O -0.947 6.947 17 O -0.974 6.974 18 C -0.733 4.733 19 C 0.043 3.957 20 C -0.160 4.160 21 C -0.057 4.057 22 C -0.161 4.161 23 C -0.071 4.071 24 C -0.155 4.155 25 C 0.156 3.844 26 O -0.310 6.310 27 C 0.131 3.869 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.266 0.734 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 13.044 3.900 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.096 4.096 3 C -0.095 4.095 4 C 0.009 3.991 5 N -0.817 5.817 6 C 0.118 3.882 7 C -0.589 4.589 8 H 0.082 0.918 9 C -0.134 4.134 10 N -0.521 5.521 11 Si 0.714 3.286 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.206 1.206 15 S 2.779 3.221 16 O -0.937 6.937 17 O -0.965 6.965 18 C -0.818 4.818 19 C 0.023 3.977 20 C -0.162 4.162 21 C -0.075 4.075 22 C -0.179 4.179 23 C -0.090 4.090 24 C -0.173 4.173 25 C 0.110 3.890 26 O -0.224 6.224 27 C 0.057 3.943 28 H 0.130 0.870 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.169 0.831 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.112 0.888 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.622 13.162 3.116 14.003 hybrid contribution 0.343 -0.365 1.764 1.833 sum -3.279 12.798 4.880 14.084 Atomic orbital electron populations 1.81183 1.13064 1.09684 1.08818 1.29080 0.95078 0.92520 0.92941 1.19899 0.81412 1.06568 1.01608 1.20930 0.80409 1.03068 0.94703 1.57439 1.13013 1.24007 1.87270 1.19405 0.92541 0.79050 0.97221 1.21547 1.37273 1.08038 0.92004 0.91767 1.24895 0.94982 0.95804 0.97681 1.69914 1.36277 1.12179 1.33690 0.86624 0.78202 0.78482 0.85293 1.19676 1.20792 1.20624 1.02015 0.73686 0.72630 0.73786 1.93586 1.39925 1.82564 1.77624 1.93532 1.66398 1.66148 1.70375 1.33986 1.09055 1.11472 1.27316 1.21841 0.92503 0.90749 0.92588 1.19221 0.97992 1.02700 0.96263 1.21059 0.97988 0.93451 0.95036 1.21053 0.98388 1.02606 0.95830 1.21130 0.93269 0.95173 0.99380 1.20612 1.02291 1.01516 0.92914 1.19175 0.88912 0.90049 0.90825 1.86069 1.33324 1.42640 1.60318 1.21606 0.95737 0.86492 0.90479 0.86973 0.86256 0.88582 0.90603 0.93469 0.92350 0.92411 0.83100 0.85039 0.85477 0.85200 0.84694 0.88787 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.08 18.54 42.15 0.78 -6.30 16 2 C 0.22 2.96 15.43 -20.76 -0.32 2.64 16 3 C -0.05 -0.62 6.02 -29.52 -0.18 -0.80 16 4 C 0.14 1.87 5.30 -4.04 -0.02 1.85 16 5 N -0.98 -16.34 2.77 -115.67 -0.32 -16.66 16 6 C 0.24 4.95 5.44 -5.20 -0.03 4.93 16 7 C -0.55 -12.57 8.95 -34.44 -0.31 -12.88 16 8 H 0.06 1.42 6.71 -52.49 -0.35 1.07 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.88 -23.03 13.29 55.43 0.74 -22.30 16 11 Si 0.89 19.37 29.54 -169.99 -5.02 14.35 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 S 2.69 45.81 5.66 -107.50 -0.61 45.20 16 16 O -0.95 -19.14 15.97 -57.17 -0.91 -20.06 16 17 O -0.97 -16.19 15.93 -57.17 -0.91 -17.10 16 18 C -0.73 -11.99 6.08 -36.19 -0.22 -12.21 16 19 C 0.04 0.62 9.53 -37.49 -0.36 0.26 16 20 C -0.16 -2.25 5.81 -104.96 -0.61 -2.86 16 21 C -0.06 -0.63 9.85 -39.34 -0.39 -1.02 16 22 C -0.16 -1.55 10.03 -39.55 -0.40 -1.95 16 23 C -0.07 -0.71 10.03 -39.48 -0.40 -1.11 16 24 C -0.15 -1.92 10.01 -39.54 -0.40 -2.32 16 25 C 0.16 2.38 6.46 -38.83 -0.25 2.13 16 26 O -0.31 -5.32 10.43 -19.02 -0.20 -5.52 16 27 C 0.13 2.30 6.86 35.95 0.25 2.55 16 28 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.12 1.29 8.13 -51.93 -0.42 0.87 16 30 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 31 H 0.08 0.90 7.61 -51.93 -0.40 0.51 16 32 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.06 1.34 6.91 -51.93 -0.36 0.98 16 34 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.15 1.81 7.32 -52.49 -0.38 1.43 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.09 1.71 6.66 -51.93 -0.35 1.36 16 41 H 0.13 2.34 7.56 -51.93 -0.39 1.94 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -30.27 370.50 -9.33 -39.60 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.74 Total: 2.36 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -3.72 Total: -19.16 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 1.20 Total: -45.26 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -2.02 Total: -42.68 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: 45.81 SS G_CDS: -0.61 Total: 45.20 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.27 -9.33 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187962325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.170 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds