Wall clock time and date at job start Wed Apr 1 2020 05:40:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13598 * 1
3 3 C 1.47202 * 179.97438 * 2 1
4 4 C 1.53001 * 109.47115 * 255.60705 * 3 2 1
5 5 N 1.46494 * 109.47275 * 180.02562 * 4 3 2
6 6 C 1.46493 * 120.00444 * 275.27738 * 5 4 3
7 7 C 1.50701 * 109.47177 * 274.72646 * 6 5 4
8 8 H 1.07996 * 119.99972 * 359.97438 * 7 6 5
9 9 C 1.37887 * 119.99644 * 179.97438 * 7 6 5
10 10 N 1.31516 * 120.00243 * 359.97438 * 9 7 6
11 11 Si 1.86797 * 119.99651 * 180.02562 * 9 7 6
12 12 H 1.48502 * 109.47396 * 359.97438 * 11 9 7
13 13 H 1.48495 * 109.47335 * 120.00090 * 11 9 7
14 14 H 1.48506 * 109.47160 * 239.99920 * 11 9 7
15 15 S 1.65608 * 119.99583 * 95.00419 * 5 4 3
16 16 O 1.42100 * 106.40059 * 203.54152 * 15 5 4
17 17 O 1.42096 * 106.40050 * 336.46185 * 15 5 4
18 18 C 1.76202 * 107.21643 * 90.00209 * 15 5 4
19 19 C 1.32961 * 119.90064 * 254.99583 * 18 15 5
20 20 C 1.47818 * 118.34511 * 181.48928 * 19 18 15
21 21 C 1.38983 * 121.59390 * 193.02082 * 20 19 18
22 22 C 1.38147 * 119.60904 * 179.61880 * 21 20 19
23 23 C 1.38423 * 120.28299 * 0.42826 * 22 21 20
24 24 C 1.38326 * 120.51429 * 0.50738 * 23 22 21
25 25 C 1.38264 * 119.82972 * 359.77783 * 24 23 22
26 26 O 1.35770 * 121.30266 * 177.92944 * 25 24 23
27 27 C 1.43039 * 117.21365 * 146.96781 * 26 25 24
28 28 H 1.09000 * 109.46705 * 135.61464 * 3 2 1
29 29 H 1.08990 * 109.47641 * 15.61109 * 3 2 1
30 30 H 1.09005 * 109.47025 * 60.00092 * 4 3 2
31 31 H 1.09001 * 109.47382 * 300.01119 * 4 3 2
32 32 H 1.09004 * 109.46868 * 34.72321 * 6 5 4
33 33 H 1.09004 * 109.47439 * 154.72444 * 6 5 4
34 34 H 0.97001 * 119.99910 * 180.02562 * 10 9 7
35 35 H 1.07998 * 120.82968 * 1.47149 * 19 18 15
36 36 H 1.08001 * 120.19764 * 359.64904 * 21 20 19
37 37 H 1.07995 * 119.85764 * 180.40703 * 22 21 20
38 38 H 1.07998 * 119.74167 * 180.47719 * 23 22 21
39 39 H 1.07990 * 120.08652 * 179.76193 * 24 23 22
40 40 H 1.08991 * 109.44731 * 287.08201 * 27 26 25
41 41 H 1.08998 * 109.17264 * 167.61630 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1178 0.3595 1.3972
5 7 4.5828 0.3607 1.3971
6 6 5.3164 -0.8913 1.5979
7 6 5.4666 -1.1544 3.0741
8 1 5.0569 -0.4584 3.7911
9 6 6.1271 -2.2838 3.5094
10 7 6.6256 -3.1316 2.6362
11 14 6.3126 -2.6103 5.3392
12 1 5.6682 -1.5136 6.1056
13 1 5.6628 -3.9012 5.6801
14 1 7.7550 -2.6752 5.6867
15 16 5.4095 1.7765 1.1633
16 8 6.6927 1.4153 0.6712
17 8 4.5269 2.6463 0.4678
18 6 5.6698 2.4967 2.7502
19 6 4.9453 3.5452 3.1292
20 6 5.2151 4.1428 4.4540
21 6 4.3411 5.0553 5.0328
22 6 4.6299 5.5825 6.2766
23 6 5.7868 5.2121 6.9403
24 6 6.6722 4.3194 6.3635
25 6 6.3989 3.7883 5.1166
26 8 7.2666 2.9421 4.5047
27 6 6.7079 1.9190 3.6757
28 1 2.9709 0.7353 -0.7189
29 1 2.9718 -0.9888 -0.2765
30 1 2.7548 -0.3751 2.1162
31 1 2.7539 1.3490 1.6738
32 1 4.7673 -1.7121 1.1365
33 1 6.3028 -0.8118 1.1408
34 1 7.0899 -3.9263 2.9425
35 1 4.1789 3.9503 2.4850
36 1 3.4412 5.3501 4.5135
37 1 3.9502 6.2868 6.7330
38 1 6.0001 5.6238 7.9157
39 1 7.5746 4.0382 6.8858
40 1 6.2456 1.1564 4.3023
41 1 7.5023 1.4638 3.0845
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000187962325.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:40:41
Heat of formation + Delta-G solvation = -56.971689 kcal
Electronic energy + Delta-G solvation = -28584.209743 eV
Core-core repulsion = 24556.260505 eV
Total energy + Delta-G solvation = -4027.949238 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.098 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.67452 -38.55410 -38.47418 -38.21693 -37.08464 -36.89912 -35.53088 -34.66089
-32.09742 -31.62995 -31.41241 -28.75256 -27.17574 -25.35437 -24.82740 -23.72918
-23.61594 -20.98274 -19.38384 -19.22882 -18.88818 -18.40596 -18.20712 -18.07636
-17.28281 -16.96194 -16.62635 -16.29764 -15.98153 -15.83443 -15.44143 -15.24378
-14.90414 -14.78281 -14.48322 -14.36458 -13.95891 -13.78863 -13.64356 -13.52242
-13.46442 -13.17499 -13.12405 -12.96563 -12.87449 -12.82300 -12.72856 -12.63370
-12.34454 -12.22475 -12.07517 -11.77693 -11.57559 -11.46684 -11.31388 -10.52419
-9.87206 -9.77736 -9.19469 -8.13526 -6.23484 -0.69339 -0.48891 0.33284
0.90731 1.40937 1.46496 1.52602 1.74717 1.85133 2.05988 2.26888
2.44252 2.70623 2.77541 3.12072 3.16140 3.21203 3.54163 3.73726
3.76731 3.94024 4.04484 4.17443 4.19825 4.30699 4.36822 4.41984
4.52806 4.57672 4.60337 4.68145 4.88020 4.98945 5.04780 5.13331
5.29279 5.41616 5.42849 5.45447 5.53567 5.73985 5.79066 5.90916
6.16126 6.25716 6.61314 6.88672 7.46016 8.94335
Molecular weight = 348.10amu
Principal moments of inertia in cm(-1)
A = 0.007827 B = 0.005127 C = 0.003800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3576.428064 B = 5459.522960 C = 7367.100917
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.490 5.490
2 C 0.247 3.753
3 C -0.047 4.047
4 C 0.128 3.872
5 N -0.977 5.977
6 C 0.252 3.748
7 C -0.539 4.539
8 H 0.070 0.930
9 C 0.024 3.976
10 N -0.919 5.919
11 Si 0.935 3.065
12 H -0.266 1.266
13 H -0.282 1.282
14 H -0.286 1.286
15 S 2.705 3.295
16 O -0.986 6.986
17 O -0.969 6.969
18 C -0.763 4.763
19 C 0.067 3.933
20 C -0.189 4.189
21 C -0.052 4.052
22 C -0.153 4.153
23 C -0.060 4.060
24 C -0.168 4.168
25 C 0.116 3.884
26 O -0.329 6.329
27 C 0.136 3.864
28 H 0.127 0.873
29 H 0.131 0.869
30 H 0.096 0.904
31 H 0.098 0.902
32 H 0.046 0.954
33 H 0.031 0.969
34 H 0.264 0.736
35 H 0.178 0.822
36 H 0.162 0.838
37 H 0.166 0.834
38 H 0.166 0.834
39 H 0.141 0.859
40 H 0.077 0.923
41 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.574 15.771 5.653 17.366
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.168 5.168
2 C -0.070 4.070
3 C -0.089 4.089
4 C 0.000 4.000
5 N -0.815 5.815
6 C 0.129 3.871
7 C -0.579 4.579
8 H 0.088 0.912
9 C -0.177 4.177
10 N -0.559 5.559
11 Si 0.762 3.238
12 H -0.190 1.190
13 H -0.208 1.208
14 H -0.212 1.212
15 S 2.796 3.204
16 O -0.977 6.977
17 O -0.959 6.959
18 C -0.850 4.850
19 C 0.047 3.953
20 C -0.191 4.191
21 C -0.070 4.070
22 C -0.170 4.170
23 C -0.078 4.078
24 C -0.187 4.187
25 C 0.071 3.929
26 O -0.244 6.244
27 C 0.061 3.939
28 H 0.145 0.855
29 H 0.149 0.851
30 H 0.114 0.886
31 H 0.116 0.884
32 H 0.064 0.936
33 H 0.049 0.951
34 H 0.074 0.926
35 H 0.196 0.804
36 H 0.180 0.820
37 H 0.183 0.817
38 H 0.184 0.816
39 H 0.159 0.841
40 H 0.095 0.905
41 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -5.670 15.904 4.859 17.569
hybrid contribution 0.930 -0.976 1.363 1.917
sum -4.740 14.928 6.223 16.853
Atomic orbital electron populations
1.81214 1.14251 1.11187 1.10143 1.29152 0.94967 0.91194 0.91676
1.19923 0.80320 1.07751 1.00899 1.21181 0.78397 1.04519 0.95856
1.57228 1.14266 1.22571 1.87437 1.18986 0.91788 0.80591 0.95749
1.21878 1.35521 1.07188 0.93286 0.91197 1.25523 0.95395 0.96203
1.00560 1.70008 1.37939 1.12873 1.35079 0.85851 0.77677 0.78302
0.81968 1.18982 1.20758 1.21203 1.01370 0.72783 0.72438 0.73829
1.93534 1.42018 1.83232 1.78912 1.93522 1.65970 1.65761 1.70637
1.33603 1.10936 1.13521 1.26898 1.22277 0.91237 0.88842 0.92932
1.19433 0.98703 1.04504 0.96433 1.21503 0.98115 0.91806 0.95575
1.21573 0.98421 1.02027 0.95014 1.21618 0.92374 0.93295 1.00465
1.20919 1.03389 1.02195 0.92182 1.19677 0.89937 0.91003 0.92267
1.86014 1.34496 1.43061 1.60806 1.21283 0.95385 0.86731 0.90468
0.85478 0.85143 0.88598 0.88401 0.93626 0.95071 0.92649 0.80446
0.82013 0.81655 0.81620 0.84145 0.90465 0.87124
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.49 -14.82 18.54 20.01 0.37 -14.45 16
2 C 0.25 6.20 15.43 89.44 1.38 7.58 16
3 C -0.05 -1.03 6.02 28.79 0.17 -0.85 16
4 C 0.13 3.28 5.30 86.38 0.46 3.74 16
5 N -0.98 -32.47 2.77 -519.86 -1.44 -33.91 16
6 C 0.25 10.69 5.44 85.63 0.47 11.15 16
7 C -0.54 -25.13 8.95 25.60 0.23 -24.90 16
8 H 0.07 3.12 6.71 -2.91 -0.02 3.11 16
9 C 0.02 1.18 5.46 84.66 0.46 1.64 16
10 N -0.92 -49.35 13.29 21.45 0.28 -49.07 16
11 Si 0.94 40.37 29.54 68.60 2.03 42.40 16
12 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16
13 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16
14 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16
15 S 2.71 92.41 5.66 -56.49 -0.32 92.09 16
16 O -0.99 -41.61 15.97 -128.00 -2.04 -43.65 16
17 O -0.97 -30.72 15.93 -128.00 -2.04 -32.76 16
18 C -0.76 -25.09 6.08 24.48 0.15 -24.94 16
19 C 0.07 1.82 9.53 23.64 0.23 2.05 16
20 C -0.19 -4.96 5.81 -20.08 -0.12 -5.07 16
21 C -0.05 -0.94 9.85 22.43 0.22 -0.72 16
22 C -0.15 -2.18 10.03 22.29 0.22 -1.96 16
23 C -0.06 -0.95 10.03 22.33 0.22 -0.73 16
24 C -0.17 -3.91 10.01 22.30 0.22 -3.69 16
25 C 0.12 3.49 6.46 22.76 0.15 3.63 16
26 O -0.33 -11.79 10.43 -90.98 -0.95 -12.74 16
27 C 0.14 5.03 6.86 71.20 0.49 5.52 16
28 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16
29 H 0.13 2.63 8.13 -2.39 -0.02 2.61 16
30 H 0.10 2.49 8.11 -2.38 -0.02 2.47 16
31 H 0.10 2.09 7.61 -2.39 -0.02 2.07 16
32 H 0.05 1.95 8.09 -2.39 -0.02 1.93 16
33 H 0.03 1.51 6.91 -2.39 -0.02 1.49 16
34 H 0.26 13.63 8.31 -92.71 -0.77 12.85 16
35 H 0.18 3.71 7.32 -2.91 -0.02 3.69 16
36 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16
37 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16
38 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16
39 H 0.14 2.95 8.06 -2.92 -0.02 2.92 16
40 H 0.08 2.97 6.66 -2.39 -0.02 2.96 16
41 H 0.11 4.35 7.56 -2.39 -0.02 4.33 16
Total: -1.00 -67.74 370.50 1.91 -65.83
By element:
Atomic # 1 Polarization: 12.74 SS G_CDS: 1.07 Total: 13.81 kcal
Atomic # 6 Polarization: -32.51 SS G_CDS: 4.95 Total: -27.55 kcal
Atomic # 7 Polarization: -96.64 SS G_CDS: -0.78 Total: -97.42 kcal
Atomic # 8 Polarization: -84.12 SS G_CDS: -5.03 Total: -89.15 kcal
Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal
Atomic # 16 Polarization: 92.41 SS G_CDS: -0.32 Total: 92.09 kcal
Total: -67.74 1.91 -65.83 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000187962325.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.856 kcal
(2) G-P(sol) polarization free energy of solvation -67.741 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.886 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.827 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.972 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds