Wall clock time and date at job start Wed Apr 1 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47115 * 255.60705 * 3 2 1 5 5 N 1.46494 * 109.47275 * 180.02562 * 4 3 2 6 6 C 1.46493 * 120.00444 * 275.27738 * 5 4 3 7 7 C 1.50701 * 109.47177 * 274.72646 * 6 5 4 8 8 H 1.07996 * 119.99972 * 359.97438 * 7 6 5 9 9 C 1.37887 * 119.99644 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00243 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99651 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47396 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47335 * 120.00090 * 11 9 7 14 14 H 1.48506 * 109.47160 * 239.99920 * 11 9 7 15 15 S 1.65608 * 119.99583 * 95.00419 * 5 4 3 16 16 O 1.42100 * 106.40059 * 203.54152 * 15 5 4 17 17 O 1.42096 * 106.40050 * 336.46185 * 15 5 4 18 18 C 1.76202 * 107.21643 * 90.00209 * 15 5 4 19 19 C 1.32961 * 119.90064 * 254.99583 * 18 15 5 20 20 C 1.47818 * 118.34511 * 181.48928 * 19 18 15 21 21 C 1.38983 * 121.59390 * 193.02082 * 20 19 18 22 22 C 1.38147 * 119.60904 * 179.61880 * 21 20 19 23 23 C 1.38423 * 120.28299 * 0.42826 * 22 21 20 24 24 C 1.38326 * 120.51429 * 0.50738 * 23 22 21 25 25 C 1.38264 * 119.82972 * 359.77783 * 24 23 22 26 26 O 1.35770 * 121.30266 * 177.92944 * 25 24 23 27 27 C 1.43039 * 117.21365 * 146.96781 * 26 25 24 28 28 H 1.09000 * 109.46705 * 135.61464 * 3 2 1 29 29 H 1.08990 * 109.47641 * 15.61109 * 3 2 1 30 30 H 1.09005 * 109.47025 * 60.00092 * 4 3 2 31 31 H 1.09001 * 109.47382 * 300.01119 * 4 3 2 32 32 H 1.09004 * 109.46868 * 34.72321 * 6 5 4 33 33 H 1.09004 * 109.47439 * 154.72444 * 6 5 4 34 34 H 0.97001 * 119.99910 * 180.02562 * 10 9 7 35 35 H 1.07998 * 120.82968 * 1.47149 * 19 18 15 36 36 H 1.08001 * 120.19764 * 359.64904 * 21 20 19 37 37 H 1.07995 * 119.85764 * 180.40703 * 22 21 20 38 38 H 1.07998 * 119.74167 * 180.47719 * 23 22 21 39 39 H 1.07990 * 120.08652 * 179.76193 * 24 23 22 40 40 H 1.08991 * 109.44731 * 287.08201 * 27 26 25 41 41 H 1.08998 * 109.17264 * 167.61630 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3595 1.3972 5 7 4.5828 0.3607 1.3971 6 6 5.3164 -0.8913 1.5979 7 6 5.4666 -1.1544 3.0741 8 1 5.0569 -0.4584 3.7911 9 6 6.1271 -2.2838 3.5094 10 7 6.6256 -3.1316 2.6362 11 14 6.3126 -2.6103 5.3392 12 1 5.6682 -1.5136 6.1056 13 1 5.6628 -3.9012 5.6801 14 1 7.7550 -2.6752 5.6867 15 16 5.4095 1.7765 1.1633 16 8 6.6927 1.4153 0.6712 17 8 4.5269 2.6463 0.4678 18 6 5.6698 2.4967 2.7502 19 6 4.9453 3.5452 3.1292 20 6 5.2151 4.1428 4.4540 21 6 4.3411 5.0553 5.0328 22 6 4.6299 5.5825 6.2766 23 6 5.7868 5.2121 6.9403 24 6 6.6722 4.3194 6.3635 25 6 6.3989 3.7883 5.1166 26 8 7.2666 2.9421 4.5047 27 6 6.7079 1.9190 3.6757 28 1 2.9709 0.7353 -0.7189 29 1 2.9718 -0.9888 -0.2765 30 1 2.7548 -0.3751 2.1162 31 1 2.7539 1.3490 1.6738 32 1 4.7673 -1.7121 1.1365 33 1 6.3028 -0.8118 1.1408 34 1 7.0899 -3.9263 2.9425 35 1 4.1789 3.9503 2.4850 36 1 3.4412 5.3501 4.5135 37 1 3.9502 6.2868 6.7330 38 1 6.0001 5.6238 7.9157 39 1 7.5746 4.0382 6.8858 40 1 6.2456 1.1564 4.3023 41 1 7.5023 1.4638 3.0845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187962325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:41 Heat of formation + Delta-G solvation = -56.971689 kcal Electronic energy + Delta-G solvation = -28584.209743 eV Core-core repulsion = 24556.260505 eV Total energy + Delta-G solvation = -4027.949238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67452 -38.55410 -38.47418 -38.21693 -37.08464 -36.89912 -35.53088 -34.66089 -32.09742 -31.62995 -31.41241 -28.75256 -27.17574 -25.35437 -24.82740 -23.72918 -23.61594 -20.98274 -19.38384 -19.22882 -18.88818 -18.40596 -18.20712 -18.07636 -17.28281 -16.96194 -16.62635 -16.29764 -15.98153 -15.83443 -15.44143 -15.24378 -14.90414 -14.78281 -14.48322 -14.36458 -13.95891 -13.78863 -13.64356 -13.52242 -13.46442 -13.17499 -13.12405 -12.96563 -12.87449 -12.82300 -12.72856 -12.63370 -12.34454 -12.22475 -12.07517 -11.77693 -11.57559 -11.46684 -11.31388 -10.52419 -9.87206 -9.77736 -9.19469 -8.13526 -6.23484 -0.69339 -0.48891 0.33284 0.90731 1.40937 1.46496 1.52602 1.74717 1.85133 2.05988 2.26888 2.44252 2.70623 2.77541 3.12072 3.16140 3.21203 3.54163 3.73726 3.76731 3.94024 4.04484 4.17443 4.19825 4.30699 4.36822 4.41984 4.52806 4.57672 4.60337 4.68145 4.88020 4.98945 5.04780 5.13331 5.29279 5.41616 5.42849 5.45447 5.53567 5.73985 5.79066 5.90916 6.16126 6.25716 6.61314 6.88672 7.46016 8.94335 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.007827 B = 0.005127 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.428064 B = 5459.522960 C = 7367.100917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.247 3.753 3 C -0.047 4.047 4 C 0.128 3.872 5 N -0.977 5.977 6 C 0.252 3.748 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.024 3.976 10 N -0.919 5.919 11 Si 0.935 3.065 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.286 1.286 15 S 2.705 3.295 16 O -0.986 6.986 17 O -0.969 6.969 18 C -0.763 4.763 19 C 0.067 3.933 20 C -0.189 4.189 21 C -0.052 4.052 22 C -0.153 4.153 23 C -0.060 4.060 24 C -0.168 4.168 25 C 0.116 3.884 26 O -0.329 6.329 27 C 0.136 3.864 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.178 0.822 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.141 0.859 40 H 0.077 0.923 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 15.771 5.653 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.070 4.070 3 C -0.089 4.089 4 C 0.000 4.000 5 N -0.815 5.815 6 C 0.129 3.871 7 C -0.579 4.579 8 H 0.088 0.912 9 C -0.177 4.177 10 N -0.559 5.559 11 Si 0.762 3.238 12 H -0.190 1.190 13 H -0.208 1.208 14 H -0.212 1.212 15 S 2.796 3.204 16 O -0.977 6.977 17 O -0.959 6.959 18 C -0.850 4.850 19 C 0.047 3.953 20 C -0.191 4.191 21 C -0.070 4.070 22 C -0.170 4.170 23 C -0.078 4.078 24 C -0.187 4.187 25 C 0.071 3.929 26 O -0.244 6.244 27 C 0.061 3.939 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.196 0.804 36 H 0.180 0.820 37 H 0.183 0.817 38 H 0.184 0.816 39 H 0.159 0.841 40 H 0.095 0.905 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.670 15.904 4.859 17.569 hybrid contribution 0.930 -0.976 1.363 1.917 sum -4.740 14.928 6.223 16.853 Atomic orbital electron populations 1.81214 1.14251 1.11187 1.10143 1.29152 0.94967 0.91194 0.91676 1.19923 0.80320 1.07751 1.00899 1.21181 0.78397 1.04519 0.95856 1.57228 1.14266 1.22571 1.87437 1.18986 0.91788 0.80591 0.95749 1.21878 1.35521 1.07188 0.93286 0.91197 1.25523 0.95395 0.96203 1.00560 1.70008 1.37939 1.12873 1.35079 0.85851 0.77677 0.78302 0.81968 1.18982 1.20758 1.21203 1.01370 0.72783 0.72438 0.73829 1.93534 1.42018 1.83232 1.78912 1.93522 1.65970 1.65761 1.70637 1.33603 1.10936 1.13521 1.26898 1.22277 0.91237 0.88842 0.92932 1.19433 0.98703 1.04504 0.96433 1.21503 0.98115 0.91806 0.95575 1.21573 0.98421 1.02027 0.95014 1.21618 0.92374 0.93295 1.00465 1.20919 1.03389 1.02195 0.92182 1.19677 0.89937 0.91003 0.92267 1.86014 1.34496 1.43061 1.60806 1.21283 0.95385 0.86731 0.90468 0.85478 0.85143 0.88598 0.88401 0.93626 0.95071 0.92649 0.80446 0.82013 0.81655 0.81620 0.84145 0.90465 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.82 18.54 20.01 0.37 -14.45 16 2 C 0.25 6.20 15.43 89.44 1.38 7.58 16 3 C -0.05 -1.03 6.02 28.79 0.17 -0.85 16 4 C 0.13 3.28 5.30 86.38 0.46 3.74 16 5 N -0.98 -32.47 2.77 -519.86 -1.44 -33.91 16 6 C 0.25 10.69 5.44 85.63 0.47 11.15 16 7 C -0.54 -25.13 8.95 25.60 0.23 -24.90 16 8 H 0.07 3.12 6.71 -2.91 -0.02 3.11 16 9 C 0.02 1.18 5.46 84.66 0.46 1.64 16 10 N -0.92 -49.35 13.29 21.45 0.28 -49.07 16 11 Si 0.94 40.37 29.54 68.60 2.03 42.40 16 12 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 13 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 14 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 15 S 2.71 92.41 5.66 -56.49 -0.32 92.09 16 16 O -0.99 -41.61 15.97 -128.00 -2.04 -43.65 16 17 O -0.97 -30.72 15.93 -128.00 -2.04 -32.76 16 18 C -0.76 -25.09 6.08 24.48 0.15 -24.94 16 19 C 0.07 1.82 9.53 23.64 0.23 2.05 16 20 C -0.19 -4.96 5.81 -20.08 -0.12 -5.07 16 21 C -0.05 -0.94 9.85 22.43 0.22 -0.72 16 22 C -0.15 -2.18 10.03 22.29 0.22 -1.96 16 23 C -0.06 -0.95 10.03 22.33 0.22 -0.73 16 24 C -0.17 -3.91 10.01 22.30 0.22 -3.69 16 25 C 0.12 3.49 6.46 22.76 0.15 3.63 16 26 O -0.33 -11.79 10.43 -90.98 -0.95 -12.74 16 27 C 0.14 5.03 6.86 71.20 0.49 5.52 16 28 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.13 2.63 8.13 -2.39 -0.02 2.61 16 30 H 0.10 2.49 8.11 -2.38 -0.02 2.47 16 31 H 0.10 2.09 7.61 -2.39 -0.02 2.07 16 32 H 0.05 1.95 8.09 -2.39 -0.02 1.93 16 33 H 0.03 1.51 6.91 -2.39 -0.02 1.49 16 34 H 0.26 13.63 8.31 -92.71 -0.77 12.85 16 35 H 0.18 3.71 7.32 -2.91 -0.02 3.69 16 36 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 37 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.14 2.95 8.06 -2.92 -0.02 2.92 16 40 H 0.08 2.97 6.66 -2.39 -0.02 2.96 16 41 H 0.11 4.35 7.56 -2.39 -0.02 4.33 16 Total: -1.00 -67.74 370.50 1.91 -65.83 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.07 Total: 13.81 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 4.95 Total: -27.55 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -0.78 Total: -97.42 kcal Atomic # 8 Polarization: -84.12 SS G_CDS: -5.03 Total: -89.15 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Atomic # 16 Polarization: 92.41 SS G_CDS: -0.32 Total: 92.09 kcal Total: -67.74 1.91 -65.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187962325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.856 kcal (2) G-P(sol) polarization free energy of solvation -67.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds