Wall clock time and date at job start Wed Apr 1 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86802 * 119.99909 * 2 1 4 4 H 1.48495 * 109.47429 * 240.00438 * 3 2 1 5 5 H 1.48506 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46915 * 120.00424 * 3 2 1 7 7 C 1.38795 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00218 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99904 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47160 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99709 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00011 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00123 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47044 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46813 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.46942 * 180.02562 * 16 15 14 18 18 C 1.34527 * 124.46193 * 270.32752 * 17 16 15 19 19 O 1.21446 * 125.70963 * 359.77248 * 18 17 16 20 20 C 1.47821 * 108.57647 * 180.13075 * 18 17 16 21 21 C 1.38562 * 134.29367 * 179.88273 * 20 18 17 22 22 C 1.38611 * 119.71824 * 179.64830 * 21 20 18 23 23 C 1.38225 * 120.46055 * 0.03750 * 22 21 20 24 24 C 1.38620 * 120.45740 * 359.97438 * 23 22 21 25 25 C 1.38559 * 119.71962 * 359.97438 * 24 23 22 26 26 C 1.34523 * 124.45731 * 90.00929 * 17 16 15 27 27 O 1.21451 * 125.71329 * 0.04483 * 26 17 16 28 28 H 0.97001 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47188 * 59.99878 * 10 9 7 30 30 H 1.09000 * 109.47169 * 299.99361 * 10 9 7 31 31 H 0.97002 * 119.99859 * 0.02562 * 13 11 10 32 32 H 1.08998 * 109.46657 * 60.00273 * 14 13 11 33 33 H 1.09000 * 109.46958 * 300.00211 * 14 13 11 34 34 H 1.08998 * 109.46958 * 60.00718 * 15 14 13 35 35 H 1.08988 * 109.47276 * 300.00333 * 15 14 13 36 36 H 1.09003 * 109.47191 * 60.00460 * 16 15 14 37 37 H 1.09004 * 109.47536 * 300.00570 * 16 15 14 38 38 H 1.08005 * 120.14443 * 359.66834 * 21 20 18 39 39 H 1.08005 * 119.76997 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.77617 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.13832 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6966 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1042 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9876 -5.3027 -0.0018 12 8 0.7913 -5.5023 -0.0019 13 7 2.8443 -6.3430 -0.0020 14 6 2.3306 -7.7150 -0.0018 15 6 3.5028 -8.6984 -0.0027 16 6 2.9662 -10.1313 -0.0019 17 7 4.0885 -11.0729 -0.0022 18 6 4.6751 -11.5578 -1.1115 19 8 4.3606 -11.2914 -2.2539 20 6 5.7610 -12.4757 -0.7072 21 6 6.6819 -13.2482 -1.3965 22 6 7.5982 -14.0152 -0.6941 23 6 7.5987 -14.0150 0.6882 24 6 6.6832 -13.2473 1.3911 25 6 5.7620 -12.4748 0.7022 26 6 4.6721 -11.5619 1.1069 27 8 4.3565 -11.2974 2.2494 28 1 -0.4850 0.8401 0.0004 29 1 3.1240 -3.7316 0.8891 30 1 3.1253 -3.7309 -0.8908 31 1 3.8011 -6.1834 -0.0015 32 1 1.7218 -7.8751 -0.8916 33 1 1.7223 -7.8751 0.8883 34 1 4.1119 -8.5385 0.8869 35 1 4.1107 -8.5382 -0.8930 36 1 2.3568 -10.2916 -0.8913 37 1 2.3584 -10.2912 0.8887 38 1 6.6859 -13.2525 -2.4765 39 1 8.3166 -14.6173 -1.2305 40 1 8.3179 -14.6164 1.2243 41 1 6.6880 -13.2513 2.4711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286531322.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:06 Heat of formation + Delta-G solvation = -57.170932 kcal Electronic energy + Delta-G solvation = -25785.338266 eV Core-core repulsion = 21757.380388 eV Total energy + Delta-G solvation = -4027.957878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.82584 -39.27354 -39.09040 -39.01961 -36.59702 -35.47947 -33.31699 -32.41396 -31.78536 -31.17062 -29.17116 -26.45074 -25.64642 -25.44481 -23.62071 -22.75465 -22.09882 -20.57578 -20.15297 -18.35203 -17.88464 -17.77613 -17.09525 -16.82128 -16.19029 -15.98625 -15.78140 -15.71178 -15.13871 -14.93142 -14.78946 -14.65659 -14.59941 -14.44972 -13.94818 -13.58219 -13.14313 -13.00708 -13.00186 -12.92867 -12.51357 -12.39752 -11.96781 -11.90280 -11.27795 -11.03478 -11.02591 -11.01658 -10.79485 -10.76136 -10.36378 -9.87792 -9.86153 -9.81068 -9.40313 -9.05166 -8.90483 -8.22765 -6.48614 -6.20098 -3.90795 -0.52903 0.32032 1.44832 1.78708 2.42156 2.96753 3.04320 3.04929 3.10361 3.24667 3.28557 3.32200 3.69811 3.75869 3.96086 4.21861 4.22660 4.38340 4.43452 4.54159 4.55830 4.61463 4.74883 4.94690 5.04135 5.08059 5.13056 5.14881 5.21820 5.28481 5.42688 5.46783 5.53675 5.64628 5.71772 5.89296 5.90865 5.92531 6.15185 6.17299 6.58464 6.69612 7.15671 7.60550 7.69186 8.36392 8.60906 9.24970 10.87268 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.001547 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.088114 B =18091.202967 C =18273.839573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.739 5.739 14 C 0.126 3.874 15 C -0.149 4.149 16 C 0.114 3.886 17 N -0.575 5.575 18 C 0.573 3.427 19 O -0.457 6.457 20 C -0.140 4.140 21 C -0.045 4.045 22 C -0.096 4.096 23 C -0.096 4.096 24 C -0.045 4.045 25 C -0.140 4.140 26 C 0.573 3.427 27 O -0.457 6.457 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.398 0.602 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.548 -33.119 -0.006 37.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.394 5.394 14 C 0.001 3.999 15 C -0.188 4.188 16 C -0.006 4.006 17 N -0.317 5.317 18 C 0.362 3.638 19 O -0.327 6.327 20 C -0.143 4.143 21 C -0.064 4.064 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.064 4.064 25 C -0.143 4.143 26 C 0.362 3.638 27 O -0.327 6.327 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.921 -32.993 -0.008 36.633 hybrid contribution 2.474 1.380 0.002 2.833 sum 18.395 -31.612 -0.006 36.575 Atomic orbital electron populations 1.70011 1.05944 1.27558 1.46768 1.24989 0.95029 0.99008 0.94526 0.86222 0.79233 0.81242 0.78784 1.19950 1.20795 1.19954 1.22833 0.94890 0.91687 1.59079 0.90972 1.85393 1.04899 0.96281 1.96724 1.23535 1.06604 0.95327 1.04956 1.20312 0.86500 0.86270 0.75094 1.90703 1.15342 1.85603 1.47436 1.45951 1.10006 1.05332 1.78115 1.21085 0.95188 0.80676 1.02918 1.22141 0.99310 0.93425 1.03878 1.21708 0.86364 0.86722 1.05820 1.46573 1.33518 1.43378 1.08246 1.18392 0.81612 0.79592 0.84214 1.90843 1.64311 1.58324 1.19253 1.20583 0.98689 1.00566 0.94492 1.20842 0.91761 0.92729 1.01047 1.21503 0.97808 0.97681 0.94439 1.21505 0.97814 0.97675 0.94436 1.20843 0.91801 0.92688 1.01048 1.20581 0.98634 1.00622 0.94491 1.18392 0.81640 0.79563 0.84217 1.90844 1.64355 1.58307 1.19233 0.92128 0.89192 0.89189 0.76795 0.91107 0.91104 0.90425 0.90413 0.87852 0.87845 0.83926 0.83962 0.83961 0.83927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -15.46 9.50 30.94 0.29 -15.17 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 11 C 0.53 10.13 7.85 -10.98 -0.09 10.04 16 12 O -0.52 -11.93 15.86 5.56 0.09 -11.84 16 13 N -0.74 -10.06 5.56 -60.29 -0.33 -10.40 16 14 C 0.13 1.45 5.67 -4.04 -0.02 1.42 16 15 C -0.15 -1.30 5.65 -26.73 -0.15 -1.45 16 16 C 0.11 0.93 5.74 -4.04 -0.02 0.91 16 17 N -0.58 -5.06 2.62 -117.61 -0.31 -5.37 16 18 C 0.57 5.25 8.02 -12.45 -0.10 5.15 16 19 O -0.46 -5.30 17.68 5.41 0.10 -5.21 16 20 C -0.14 -0.98 6.40 -104.83 -0.67 -1.65 16 21 C -0.05 -0.20 10.09 -39.32 -0.40 -0.60 16 22 C -0.10 -0.24 10.03 -39.45 -0.40 -0.63 16 23 C -0.10 -0.24 10.04 -39.44 -0.40 -0.63 16 24 C -0.05 -0.20 10.09 -39.32 -0.40 -0.60 16 25 C -0.14 -0.98 6.40 -104.84 -0.67 -1.65 16 26 C 0.57 5.25 8.02 -12.46 -0.10 5.15 16 27 O -0.46 -5.30 17.68 5.41 0.10 -5.21 16 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.40 4.27 8.47 -40.82 -0.35 3.93 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.68 8.14 -51.94 -0.42 0.26 16 36 H 0.10 0.78 7.97 -51.93 -0.41 0.37 16 37 H 0.10 0.78 7.96 -51.93 -0.41 0.37 16 38 H 0.14 0.46 8.06 -52.48 -0.42 0.03 16 39 H 0.14 -0.03 8.06 -52.48 -0.42 -0.45 16 40 H 0.14 -0.03 8.06 -52.49 -0.42 -0.45 16 41 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -38.05 380.84 -9.06 -47.12 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.95 Total: -1.29 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.99 Total: -0.61 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.09 Total: -41.42 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.28 Total: -22.26 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.05 -9.06 -47.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286531322.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.053 kcal (2) G-P(sol) polarization free energy of solvation -38.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds