Wall clock time and date at job start Wed Apr 1 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86802 * 119.99909 * 2 1 4 4 H 1.48495 * 109.47429 * 240.00438 * 3 2 1 5 5 H 1.48506 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46915 * 120.00424 * 3 2 1 7 7 C 1.38795 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00218 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99904 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47160 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99709 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00011 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00123 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47044 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46813 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.46942 * 180.02562 * 16 15 14 18 18 C 1.34527 * 124.46193 * 270.32752 * 17 16 15 19 19 O 1.21446 * 125.70963 * 359.77248 * 18 17 16 20 20 C 1.47821 * 108.57647 * 180.13075 * 18 17 16 21 21 C 1.38562 * 134.29367 * 179.88273 * 20 18 17 22 22 C 1.38611 * 119.71824 * 179.64830 * 21 20 18 23 23 C 1.38225 * 120.46055 * 0.03750 * 22 21 20 24 24 C 1.38620 * 120.45740 * 359.97438 * 23 22 21 25 25 C 1.38559 * 119.71962 * 359.97438 * 24 23 22 26 26 C 1.34523 * 124.45731 * 90.00929 * 17 16 15 27 27 O 1.21451 * 125.71329 * 0.04483 * 26 17 16 28 28 H 0.97001 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47188 * 59.99878 * 10 9 7 30 30 H 1.09000 * 109.47169 * 299.99361 * 10 9 7 31 31 H 0.97002 * 119.99859 * 0.02562 * 13 11 10 32 32 H 1.08998 * 109.46657 * 60.00273 * 14 13 11 33 33 H 1.09000 * 109.46958 * 300.00211 * 14 13 11 34 34 H 1.08998 * 109.46958 * 60.00718 * 15 14 13 35 35 H 1.08988 * 109.47276 * 300.00333 * 15 14 13 36 36 H 1.09003 * 109.47191 * 60.00460 * 16 15 14 37 37 H 1.09004 * 109.47536 * 300.00570 * 16 15 14 38 38 H 1.08005 * 120.14443 * 359.66834 * 21 20 18 39 39 H 1.08005 * 119.76997 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.77617 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.13832 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6966 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1042 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9876 -5.3027 -0.0018 12 8 0.7913 -5.5023 -0.0019 13 7 2.8443 -6.3430 -0.0020 14 6 2.3306 -7.7150 -0.0018 15 6 3.5028 -8.6984 -0.0027 16 6 2.9662 -10.1313 -0.0019 17 7 4.0885 -11.0729 -0.0022 18 6 4.6751 -11.5578 -1.1115 19 8 4.3606 -11.2914 -2.2539 20 6 5.7610 -12.4757 -0.7072 21 6 6.6819 -13.2482 -1.3965 22 6 7.5982 -14.0152 -0.6941 23 6 7.5987 -14.0150 0.6882 24 6 6.6832 -13.2473 1.3911 25 6 5.7620 -12.4748 0.7022 26 6 4.6721 -11.5619 1.1069 27 8 4.3565 -11.2974 2.2494 28 1 -0.4850 0.8401 0.0004 29 1 3.1240 -3.7316 0.8891 30 1 3.1253 -3.7309 -0.8908 31 1 3.8011 -6.1834 -0.0015 32 1 1.7218 -7.8751 -0.8916 33 1 1.7223 -7.8751 0.8883 34 1 4.1119 -8.5385 0.8869 35 1 4.1107 -8.5382 -0.8930 36 1 2.3568 -10.2916 -0.8913 37 1 2.3584 -10.2912 0.8887 38 1 6.6859 -13.2525 -2.4765 39 1 8.3166 -14.6173 -1.2305 40 1 8.3179 -14.6164 1.2243 41 1 6.6880 -13.2513 2.4711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286531322.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:06 Heat of formation + Delta-G solvation = -83.818866 kcal Electronic energy + Delta-G solvation = -25786.493807 eV Core-core repulsion = 21757.380388 eV Total energy + Delta-G solvation = -4029.113419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.43412 -40.66351 -39.83818 -39.50876 -37.43552 -36.49157 -34.59432 -34.20134 -32.11116 -32.05597 -30.49995 -27.75496 -27.16149 -26.22781 -24.25102 -23.23423 -22.86804 -21.83631 -20.90410 -19.84844 -18.84659 -18.49958 -17.97028 -17.64003 -17.42776 -16.97496 -16.89149 -16.83499 -16.45784 -15.85355 -15.85116 -15.54681 -15.41510 -15.23119 -15.02320 -14.74326 -14.47932 -14.11569 -14.05202 -13.57378 -13.33229 -13.23465 -13.18127 -13.02054 -12.87141 -12.65038 -12.57359 -12.14553 -11.76484 -11.61841 -11.47323 -11.20514 -11.13690 -10.92645 -10.29898 -10.21307 -10.19541 -10.18895 -8.68197 -8.35209 -6.13899 -1.03402 -0.00663 0.96443 1.12542 1.27026 1.43498 1.46040 1.55850 1.56950 1.76288 2.24481 2.27976 2.56878 2.62372 2.98740 3.18342 3.30144 3.59839 3.69605 3.69873 3.79289 4.01902 4.07097 4.19089 4.19777 4.21783 4.29104 4.30375 4.39438 4.48689 4.49911 4.60526 4.82478 4.84735 4.96304 4.97301 5.22533 5.28943 5.35321 5.40684 5.50920 5.70417 6.03728 6.18790 6.43629 6.48094 7.05716 7.18651 8.73806 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.001547 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.088114 B =18091.202967 C =18273.839573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.714 5.714 14 C 0.126 3.874 15 C -0.131 4.131 16 C 0.110 3.890 17 N -0.577 5.577 18 C 0.573 3.427 19 O -0.491 6.491 20 C -0.160 4.160 21 C -0.046 4.046 22 C -0.084 4.084 23 C -0.084 4.084 24 C -0.046 4.046 25 C -0.160 4.160 26 C 0.573 3.427 27 O -0.491 6.491 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.416 0.584 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.154 0.846 39 H 0.178 0.822 40 H 0.178 0.822 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.504 -34.759 -0.007 41.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.369 5.369 14 C 0.002 3.998 15 C -0.170 4.170 16 C -0.010 4.010 17 N -0.318 5.318 18 C 0.364 3.636 19 O -0.364 6.364 20 C -0.164 4.164 21 C -0.065 4.065 22 C -0.101 4.101 23 C -0.101 4.101 24 C -0.065 4.065 25 C -0.164 4.164 26 C 0.364 3.636 27 O -0.364 6.364 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.253 0.747 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.171 0.829 39 H 0.196 0.804 40 H 0.196 0.804 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 19.940 -34.679 -0.008 40.002 hybrid contribution 1.364 1.669 0.002 2.155 sum 21.304 -33.010 -0.006 39.288 Atomic orbital electron populations 1.70181 1.07979 1.28702 1.47861 1.26140 0.95979 1.03338 0.93669 0.84994 0.77801 0.75643 0.79489 1.18655 1.20317 1.18663 1.23184 0.95380 0.92004 1.59105 0.89876 1.85573 1.10509 0.99236 1.97068 1.23377 1.03627 0.94260 1.06869 1.20073 0.86207 0.86692 0.75071 1.90692 1.17353 1.86109 1.50100 1.45707 1.10384 1.05087 1.75690 1.21189 0.96257 0.79733 1.02626 1.21956 0.98026 0.92895 1.04123 1.21724 0.86571 0.86450 1.06277 1.46621 1.33490 1.43263 1.08449 1.18793 0.81797 0.79404 0.83650 1.90814 1.65542 1.59745 1.20284 1.20522 0.99398 1.01830 0.94646 1.21169 0.91306 0.92149 1.01848 1.21956 0.97083 0.96469 0.94639 1.21958 0.97091 0.96461 0.94634 1.21170 0.91344 0.92108 1.01849 1.20520 0.99332 1.01896 0.94644 1.18792 0.81829 0.79370 0.83653 1.90815 1.65582 1.59732 1.20265 0.91962 0.87145 0.87138 0.74713 0.91467 0.91460 0.90106 0.90101 0.87459 0.87455 0.82879 0.80427 0.80427 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 44.01 29.55 68.60 2.03 46.04 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.55 -31.78 9.50 67.95 0.65 -31.13 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 10 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 11 C 0.53 20.24 7.85 87.66 0.69 20.93 16 12 O -0.56 -26.76 15.86 -3.02 -0.05 -26.80 16 13 N -0.71 -18.70 5.56 -463.06 -2.57 -21.27 16 14 C 0.13 2.85 5.67 86.38 0.49 3.34 16 15 C -0.13 -2.23 5.65 30.59 0.17 -2.05 16 16 C 0.11 1.83 5.74 86.38 0.50 2.33 16 17 N -0.58 -10.40 2.62 -762.93 -2.00 -12.40 16 18 C 0.57 10.69 8.02 86.82 0.70 11.39 16 19 O -0.49 -11.70 17.68 -3.55 -0.06 -11.76 16 20 C -0.16 -2.14 6.40 -20.00 -0.13 -2.26 16 21 C -0.05 -0.32 10.09 22.44 0.23 -0.09 16 22 C -0.08 -0.08 10.03 22.36 0.22 0.15 16 23 C -0.08 -0.08 10.04 22.36 0.22 0.15 16 24 C -0.05 -0.32 10.09 22.44 0.23 -0.09 16 25 C -0.16 -2.13 6.40 -20.00 -0.13 -2.26 16 26 C 0.57 10.69 8.02 86.82 0.70 11.39 16 27 O -0.49 -11.70 17.68 -3.56 -0.06 -11.77 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 30 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 31 H 0.42 8.06 8.47 -92.71 -0.79 7.28 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.69 7.97 -2.39 -0.02 1.67 16 37 H 0.11 1.69 7.96 -2.38 -0.02 1.67 16 38 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 39 H 0.18 -1.05 8.06 -2.91 -0.02 -1.07 16 40 H 0.18 -1.05 8.06 -2.91 -0.02 -1.07 16 41 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -86.62 380.84 2.13 -84.48 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.29 Total: 11.27 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.44 Total: 8.21 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -4.29 Total: -89.97 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.17 Total: -50.33 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -86.62 2.13 -84.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286531322.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.665 kcal (2) G-P(sol) polarization free energy of solvation -86.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds