Wall clock time and date at job start Wed Apr 1 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35705 * 117.00097 * 2 1 4 4 N 1.32246 * 119.69053 * 359.72694 * 3 2 1 5 5 C 1.31952 * 121.66019 * 179.74822 * 4 3 2 6 6 C 1.38078 * 120.85400 * 0.53121 * 5 4 3 7 7 C 1.50705 * 120.34960 * 179.76298 * 6 5 4 8 8 N 1.46497 * 109.46962 * 269.97502 * 7 6 5 9 9 S 1.65603 * 119.99899 * 164.99870 * 8 7 6 10 10 O 1.42104 * 104.27704 * 181.07433 * 9 8 7 11 11 O 1.42104 * 104.27751 * 308.92664 * 9 8 7 12 12 C 1.81399 * 104.44957 * 64.99917 * 9 8 7 13 13 C 1.52991 * 109.47007 * 179.97438 * 12 9 8 14 14 C 1.53006 * 109.46938 * 180.02562 * 13 12 9 15 15 C 1.50703 * 109.47017 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00130 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99928 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99956 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00161 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46758 * 60.00234 * 19 17 15 21 21 H 1.48495 * 109.47032 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46796 * 300.00642 * 19 17 15 23 23 C 1.38781 * 119.29948 * 359.73538 * 6 5 4 24 24 C 1.38502 * 118.47638 * 0.02562 * 23 6 5 25 25 Cl 1.73599 * 120.45615 * 180.02562 * 24 23 6 26 26 H 1.09005 * 109.47515 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47255 * 299.99770 * 1 2 3 28 28 H 1.09004 * 109.47453 * 59.99452 * 1 2 3 29 29 H 1.07997 * 119.57278 * 180.24303 * 5 4 3 30 30 H 1.08997 * 109.46891 * 29.97492 * 7 6 5 31 31 H 1.08999 * 109.46953 * 149.97501 * 7 6 5 32 32 H 0.97003 * 120.00457 * 345.00039 * 8 7 6 33 33 H 1.09000 * 109.47113 * 300.00406 * 12 9 8 34 34 H 1.08998 * 109.46814 * 60.00052 * 12 9 8 35 35 H 1.09000 * 109.47684 * 300.00262 * 13 12 9 36 36 H 1.08998 * 109.47122 * 60.00447 * 13 12 9 37 37 H 1.08998 * 109.46975 * 299.99731 * 14 13 12 38 38 H 1.08998 * 109.46981 * 60.00199 * 14 13 12 39 39 H 0.96997 * 119.99922 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.76257 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 7 1.3188 2.3143 -0.0055 5 6 1.8771 3.5099 -0.0008 6 6 3.2507 3.6500 -0.0008 7 6 3.8763 5.0211 -0.0008 8 7 4.0795 5.4652 -1.3820 9 16 4.3986 7.0586 -1.7010 10 8 4.5081 7.1174 -3.1166 11 8 3.3738 7.7653 -1.0155 12 6 6.0097 7.3618 -0.9246 13 6 6.4198 8.8179 -1.1529 14 6 7.7791 9.0735 -0.4986 15 6 8.1828 10.5080 -0.7230 16 1 7.5345 11.1712 -1.2765 17 6 9.3793 10.9741 -0.2207 18 7 10.1684 10.1666 0.4537 19 14 9.8801 12.7520 -0.4994 20 1 8.8636 13.6525 0.1016 21 1 11.1992 13.0000 0.1358 22 1 9.9755 13.0166 -1.9576 23 6 4.0492 2.5149 -0.0004 24 6 3.4334 1.2744 -0.0004 25 17 4.3825 -0.1792 0.0009 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.2515 4.3903 -0.0015 30 1 3.2173 5.7211 0.5127 31 1 4.8366 4.9823 0.5134 32 1 4.0271 4.8260 -2.1097 33 1 5.9398 7.1671 0.1456 34 1 6.7558 6.7011 -1.3661 35 1 6.4899 9.0122 -2.2232 36 1 5.6738 9.4789 -0.7118 37 1 7.7094 8.8792 0.5716 38 1 8.5249 8.4125 -0.9402 39 1 11.0103 10.4944 0.8067 40 1 5.1261 2.5971 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295621354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:47 Heat of formation + Delta-G solvation = -93.002646 kcal Electronic energy + Delta-G solvation = -24962.684940 eV Core-core repulsion = 20930.740433 eV Total energy + Delta-G solvation = -4031.944507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.074 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.26004 -38.70564 -37.03819 -36.95841 -35.89734 -35.67083 -34.70912 -32.73979 -32.21675 -31.17778 -28.01502 -27.84794 -25.97804 -24.09375 -23.76249 -22.54199 -20.72177 -19.32531 -18.98356 -17.93663 -17.74479 -16.97831 -16.61216 -16.50313 -15.88523 -15.73908 -15.26971 -14.94311 -14.91099 -14.51521 -14.25522 -14.14079 -13.85041 -13.64917 -12.91769 -12.61328 -12.44002 -12.37015 -12.31435 -12.01644 -11.97173 -11.88304 -11.82446 -11.62004 -11.48980 -11.27025 -10.91690 -10.90520 -10.48869 -10.29684 -10.20115 -9.98298 -9.82418 -9.37339 -9.13948 -8.89352 -8.42637 -6.07846 -4.11039 0.26420 0.44938 0.63596 1.62674 2.48025 2.72952 3.14813 3.30719 3.34809 3.37836 3.76279 3.86002 4.02382 4.32878 4.33994 4.40495 4.44403 4.51927 4.83250 4.87575 4.90870 5.06674 5.11806 5.13942 5.20032 5.21194 5.28654 5.51481 5.61921 5.74285 5.84286 6.22685 6.40605 6.58995 6.75005 6.83837 7.17494 7.53735 7.63643 7.89865 8.30205 8.94951 9.53793 11.03260 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.001979 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.493817 B =14146.542565 C =15042.495641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.296 6.296 3 C 0.336 3.664 4 N -0.525 5.525 5 C 0.166 3.834 6 C -0.175 4.175 7 C 0.165 3.835 8 N -1.124 6.124 9 S 2.600 3.400 10 O -0.961 6.961 11 O -0.960 6.960 12 C -0.608 4.608 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.016 4.016 24 C -0.113 4.113 25 Cl -0.041 7.041 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.173 0.827 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.416 0.584 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.189 -22.165 0.888 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.202 6.202 3 C 0.156 3.844 4 N -0.249 5.249 5 C 0.009 3.991 6 C -0.179 4.179 7 C 0.038 3.962 8 N -0.882 5.882 9 S 2.696 3.304 10 O -0.951 6.951 11 O -0.950 6.950 12 C -0.740 4.740 13 C -0.146 4.146 14 C -0.007 4.007 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.042 4.042 24 C -0.142 4.142 25 Cl -0.012 7.012 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.190 0.810 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.250 0.750 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.342 -21.970 0.645 28.627 hybrid contribution 1.664 0.357 0.006 1.702 sum -16.678 -21.612 0.651 27.307 Atomic orbital electron populations 1.22956 0.76536 1.03405 1.02787 1.86327 1.23370 1.23524 1.86987 1.19596 0.87752 0.85690 0.91340 1.67585 1.39398 0.98381 1.19505 1.22619 0.92401 0.93895 0.90175 1.20657 0.94538 0.95599 1.07112 1.20063 1.01082 0.91906 0.83142 1.55868 1.89214 1.29603 1.13481 1.05363 0.77729 0.72486 0.74812 1.93591 1.87887 1.84872 1.28747 1.93570 1.53984 1.71306 1.76176 1.30541 1.20863 1.09059 1.13551 1.21507 1.02839 0.88044 1.02197 1.19059 0.88894 0.96966 0.95821 1.21215 1.04336 0.95997 1.35034 0.92412 1.25019 0.96468 0.97853 0.95030 1.69942 1.11654 1.35430 1.36380 0.86611 0.77710 0.84893 0.78542 1.20113 1.21250 1.20128 1.21422 1.01638 0.88874 0.92283 1.20868 0.89489 0.90210 1.13673 1.98393 1.70933 1.34864 1.97005 0.88225 0.91948 0.91950 0.81041 0.88498 0.90040 0.75037 0.85421 0.85193 0.91549 0.91504 0.96112 0.96124 0.92827 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.38 101.05 1.05 1.28 16 2 O -0.30 -2.68 9.95 -18.82 -0.19 -2.87 16 3 C 0.34 3.20 7.49 -17.10 -0.13 3.08 16 4 N -0.53 -4.84 9.22 -13.30 -0.12 -4.96 16 5 C 0.17 1.30 10.85 -17.56 -0.19 1.11 16 6 C -0.17 -1.27 5.29 -104.48 -0.55 -1.83 16 7 C 0.16 1.19 6.28 -5.19 -0.03 1.15 16 8 N -1.12 -9.94 5.88 -11.66 -0.07 -10.01 16 9 S 2.60 33.81 5.46 -107.50 -0.59 33.22 16 10 O -0.96 -15.75 18.08 -57.54 -1.04 -16.79 16 11 O -0.96 -15.12 17.50 -57.54 -1.01 -16.12 16 12 C -0.61 -8.39 6.07 37.15 0.23 -8.17 16 13 C -0.11 -2.05 5.16 -26.73 -0.14 -2.19 16 14 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 15 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.02 -0.11 9.65 -39.28 -0.38 -0.49 16 24 C -0.11 -0.99 6.36 -39.21 -0.25 -1.24 16 25 Cl -0.04 -0.36 28.54 -51.86 -1.48 -1.84 16 26 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.37 8.11 -51.93 -0.42 -0.05 16 28 H 0.06 0.38 8.10 -51.93 -0.42 -0.05 16 29 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.10 0.67 7.64 -51.93 -0.40 0.27 16 31 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.42 3.19 8.61 -34.47 -0.30 2.89 16 33 H 0.13 1.49 8.14 -51.92 -0.42 1.07 16 34 H 0.13 1.59 8.14 -51.92 -0.42 1.17 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -35.76 375.55 -9.36 -45.12 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -5.30 Total: -2.23 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -0.95 Total: -20.05 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.55 Total: -40.40 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -2.23 Total: -35.78 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 33.81 SS G_CDS: -0.59 Total: 33.22 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.48 Total: -1.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.76 -9.36 -45.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295621354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.881 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds