Wall clock time and date at job start Wed Apr 1 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35705 * 117.00097 * 2 1 4 4 N 1.32246 * 119.69053 * 359.72694 * 3 2 1 5 5 C 1.31952 * 121.66019 * 179.74822 * 4 3 2 6 6 C 1.38078 * 120.85400 * 0.53121 * 5 4 3 7 7 C 1.50705 * 120.34960 * 179.76298 * 6 5 4 8 8 N 1.46497 * 109.46962 * 269.97502 * 7 6 5 9 9 S 1.65603 * 119.99899 * 164.99870 * 8 7 6 10 10 O 1.42104 * 104.27704 * 181.07433 * 9 8 7 11 11 O 1.42104 * 104.27751 * 308.92664 * 9 8 7 12 12 C 1.81399 * 104.44957 * 64.99917 * 9 8 7 13 13 C 1.52991 * 109.47007 * 179.97438 * 12 9 8 14 14 C 1.53006 * 109.46938 * 180.02562 * 13 12 9 15 15 C 1.50703 * 109.47017 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00130 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99928 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99956 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00161 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46758 * 60.00234 * 19 17 15 21 21 H 1.48495 * 109.47032 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46796 * 300.00642 * 19 17 15 23 23 C 1.38781 * 119.29948 * 359.73538 * 6 5 4 24 24 C 1.38502 * 118.47638 * 0.02562 * 23 6 5 25 25 Cl 1.73599 * 120.45615 * 180.02562 * 24 23 6 26 26 H 1.09005 * 109.47515 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47255 * 299.99770 * 1 2 3 28 28 H 1.09004 * 109.47453 * 59.99452 * 1 2 3 29 29 H 1.07997 * 119.57278 * 180.24303 * 5 4 3 30 30 H 1.08997 * 109.46891 * 29.97492 * 7 6 5 31 31 H 1.08999 * 109.46953 * 149.97501 * 7 6 5 32 32 H 0.97003 * 120.00457 * 345.00039 * 8 7 6 33 33 H 1.09000 * 109.47113 * 300.00406 * 12 9 8 34 34 H 1.08998 * 109.46814 * 60.00052 * 12 9 8 35 35 H 1.09000 * 109.47684 * 300.00262 * 13 12 9 36 36 H 1.08998 * 109.47122 * 60.00447 * 13 12 9 37 37 H 1.08998 * 109.46975 * 299.99731 * 14 13 12 38 38 H 1.08998 * 109.46981 * 60.00199 * 14 13 12 39 39 H 0.96997 * 119.99922 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.76257 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 7 1.3188 2.3143 -0.0055 5 6 1.8771 3.5099 -0.0008 6 6 3.2507 3.6500 -0.0008 7 6 3.8763 5.0211 -0.0008 8 7 4.0795 5.4652 -1.3820 9 16 4.3986 7.0586 -1.7010 10 8 4.5081 7.1174 -3.1166 11 8 3.3738 7.7653 -1.0155 12 6 6.0097 7.3618 -0.9246 13 6 6.4198 8.8179 -1.1529 14 6 7.7791 9.0735 -0.4986 15 6 8.1828 10.5080 -0.7230 16 1 7.5345 11.1712 -1.2765 17 6 9.3793 10.9741 -0.2207 18 7 10.1684 10.1666 0.4537 19 14 9.8801 12.7520 -0.4994 20 1 8.8636 13.6525 0.1016 21 1 11.1992 13.0000 0.1358 22 1 9.9755 13.0166 -1.9576 23 6 4.0492 2.5149 -0.0004 24 6 3.4334 1.2744 -0.0004 25 17 4.3825 -0.1792 0.0009 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.2515 4.3903 -0.0015 30 1 3.2173 5.7211 0.5127 31 1 4.8366 4.9823 0.5134 32 1 4.0271 4.8260 -2.1097 33 1 5.9398 7.1671 0.1456 34 1 6.7558 6.7011 -1.3661 35 1 6.4899 9.0122 -2.2232 36 1 5.6738 9.4789 -0.7118 37 1 7.7094 8.8792 0.5716 38 1 8.5249 8.4125 -0.9402 39 1 11.0103 10.4944 0.8067 40 1 5.1261 2.5971 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295621354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:47 Heat of formation + Delta-G solvation = -120.586730 kcal Electronic energy + Delta-G solvation = -24963.881075 eV Core-core repulsion = 20930.740433 eV Total energy + Delta-G solvation = -4033.140643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.074 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86135 -39.30207 -38.14215 -37.65299 -37.01307 -36.43149 -36.41694 -34.12577 -33.36296 -31.81453 -29.60721 -28.53704 -26.59591 -25.58267 -24.67185 -23.15971 -22.37756 -20.33584 -19.57123 -18.76974 -18.55461 -18.49411 -17.74888 -17.18946 -17.07055 -16.67176 -16.46641 -16.15497 -15.69502 -15.50151 -15.34253 -14.76561 -14.53095 -14.44408 -14.25875 -14.00105 -13.64298 -13.45733 -13.14499 -13.08878 -13.05134 -12.95825 -12.88676 -12.74971 -12.70599 -12.61740 -12.20057 -12.15012 -12.09922 -11.69203 -11.35183 -11.11932 -10.90683 -10.80577 -10.54596 -10.34776 -9.51780 -8.20623 -6.31012 -0.73070 -0.18989 -0.00675 0.99821 1.41747 1.43723 1.51639 1.84396 1.93282 2.41345 2.50148 2.82023 3.13036 3.19413 3.27837 3.46023 3.76910 3.81522 3.88853 3.95326 4.01819 4.35902 4.41333 4.42453 4.45623 4.57115 4.65193 4.72415 4.74987 4.85673 5.03327 5.05840 5.12180 5.20200 5.49004 5.67878 5.82792 6.00656 6.08001 6.22818 6.56655 6.84904 7.38093 8.90343 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.001979 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.493817 B =14146.542565 C =15042.495641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.310 6.310 3 C 0.323 3.677 4 N -0.538 5.538 5 C 0.160 3.840 6 C -0.169 4.169 7 C 0.156 3.844 8 N -1.108 6.108 9 S 2.633 3.367 10 O -0.995 6.995 11 O -0.986 6.986 12 C -0.610 4.610 13 C -0.108 4.108 14 C 0.031 3.969 15 C -0.553 4.553 16 H 0.059 0.941 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.960 3.040 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.269 1.269 23 C -0.010 4.010 24 C -0.126 4.126 25 Cl -0.045 7.045 26 H 0.123 0.877 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.188 0.812 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.425 0.575 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.006 0.994 38 H 0.002 0.998 39 H 0.264 0.736 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.627 -22.232 0.987 28.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.217 6.217 3 C 0.143 3.857 4 N -0.262 5.262 5 C 0.004 3.996 6 C -0.173 4.173 7 C 0.030 3.970 8 N -0.870 5.870 9 S 2.729 3.271 10 O -0.985 6.985 11 O -0.976 6.976 12 C -0.740 4.740 13 C -0.147 4.147 14 C -0.008 4.008 15 C -0.591 4.591 16 H 0.078 0.922 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.785 3.215 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.194 1.194 23 C -0.036 4.036 24 C -0.156 4.156 25 Cl -0.017 7.017 26 H 0.141 0.859 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.204 0.796 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.261 0.739 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.024 0.976 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -18.787 -22.036 0.736 28.966 hybrid contribution 1.748 0.301 0.006 1.773 sum -17.039 -21.735 0.742 27.628 Atomic orbital electron populations 1.23131 0.75281 1.04918 1.02596 1.86310 1.24731 1.23642 1.86991 1.19818 0.88236 0.85948 0.91730 1.67605 1.39778 0.98737 1.20101 1.22978 0.93104 0.93983 0.89573 1.20609 0.94230 0.95539 1.06923 1.20357 1.02779 0.91804 0.82038 1.55438 1.88601 1.28106 1.14811 1.04135 0.76654 0.72978 0.73351 1.93543 1.88115 1.85874 1.30976 1.93538 1.54722 1.72823 1.76489 1.30506 1.22169 1.05647 1.15713 1.21309 1.00010 0.91974 1.01432 1.18965 0.91421 0.95216 0.95164 1.21739 1.04679 0.97754 1.34894 0.92230 1.25909 0.96584 1.02278 0.94781 1.70054 1.12085 1.37385 1.37336 0.85572 0.77516 0.79690 0.78730 1.19234 1.20742 1.19387 1.21677 1.02682 0.88231 0.91043 1.21022 0.89414 0.90621 1.14530 1.98387 1.70898 1.35284 1.97087 0.85930 0.92029 0.92189 0.79550 0.87858 0.87462 0.73938 0.83005 0.83470 0.91845 0.91407 0.97602 0.97922 0.92693 0.80496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 113.37 1.18 1.58 16 2 O -0.31 -5.48 9.95 -90.25 -0.90 -6.37 16 3 C 0.32 5.90 7.49 84.81 0.63 6.54 16 4 N -0.54 -9.37 9.22 -308.85 -2.85 -12.22 16 5 C 0.16 2.23 10.85 84.64 0.92 3.15 16 6 C -0.17 -2.05 5.29 -19.77 -0.10 -2.15 16 7 C 0.16 1.76 6.28 85.64 0.54 2.30 16 8 N -1.11 -16.61 5.88 -190.79 -1.12 -17.73 16 9 S 2.63 63.50 5.46 -56.49 -0.31 63.20 16 10 O -0.99 -31.34 18.08 -127.65 -2.31 -33.65 16 11 O -0.99 -29.29 17.50 -127.65 -2.23 -31.53 16 12 C -0.61 -15.64 6.07 71.98 0.44 -15.20 16 13 C -0.11 -4.10 5.16 30.59 0.16 -3.94 16 14 C 0.03 1.51 4.97 29.85 0.15 1.66 16 15 C -0.55 -30.71 9.11 25.60 0.23 -30.47 16 16 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 17 C 0.00 0.16 5.46 84.65 0.46 0.62 16 18 N -0.93 -54.68 13.29 21.45 0.28 -54.40 16 19 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 C -0.01 -0.13 9.65 22.46 0.22 0.09 16 24 C -0.13 -2.08 6.36 22.51 0.14 -1.94 16 25 Cl -0.05 -0.75 28.54 -2.72 -0.08 -0.83 16 26 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.06 0.69 8.11 -2.39 -0.02 0.68 16 28 H 0.06 0.70 8.10 -2.38 -0.02 0.68 16 29 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.10 1.11 7.64 -2.39 -0.02 1.09 16 31 H 0.11 0.73 8.09 -2.39 -0.02 0.71 16 32 H 0.42 5.38 8.61 -96.74 -0.83 4.55 16 33 H 0.15 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.00 0.12 8.14 -2.39 -0.02 0.11 16 39 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -76.94 375.55 -2.28 -79.22 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 0.24 Total: 6.54 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 4.96 Total: -37.77 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -3.68 Total: -84.35 kcal Atomic # 8 Polarization: -66.11 SS G_CDS: -5.44 Total: -71.55 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 63.50 SS G_CDS: -0.31 Total: 63.20 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -76.94 -2.28 -79.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295621354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.366 kcal (2) G-P(sol) polarization free energy of solvation -76.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds