Wall clock time and date at job start Wed Apr 1 2020 04:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 117.00121 * 2 1 4 4 C 1.38763 * 120.04668 * 359.97438 * 3 2 1 5 5 C 1.38128 * 119.97025 * 180.02562 * 4 3 2 6 6 C 1.38271 * 120.06904 * 359.97438 * 5 4 3 7 7 C 1.38358 * 120.09399 * 359.72854 * 6 5 4 8 8 Cl 1.73607 * 119.98467 * 180.27742 * 7 6 5 9 9 C 1.38282 * 120.03380 * 0.55407 * 7 6 5 10 10 C 1.50699 * 120.03726 * 179.72307 * 9 7 6 11 11 N 1.46497 * 109.46896 * 262.21353 * 10 9 7 12 12 C 1.36935 * 120.00422 * 290.55963 * 11 10 9 13 13 H 1.08004 * 119.99911 * 19.21083 * 12 11 10 14 14 C 1.38810 * 120.00540 * 199.21289 * 12 11 10 15 15 N 1.31617 * 119.99785 * 27.66724 * 14 12 11 16 16 Si 1.86800 * 120.00282 * 207.67805 * 14 12 11 17 17 H 1.48498 * 109.47308 * 89.99303 * 16 14 12 18 18 H 1.48494 * 109.47077 * 209.99966 * 16 14 12 19 19 H 1.48506 * 109.46669 * 329.99324 * 16 14 12 20 20 S 1.65609 * 119.99936 * 110.56080 * 11 10 9 21 21 O 1.42103 * 106.39935 * 335.03943 * 20 11 10 22 22 O 1.42101 * 106.39822 * 107.95759 * 20 11 10 23 23 N 1.65593 * 107.21804 * 221.50089 * 20 11 10 24 24 C 1.46496 * 120.00418 * 84.86086 * 23 20 11 25 25 C 1.46503 * 119.99882 * 264.86570 * 23 20 11 26 26 H 1.08995 * 109.47155 * 59.99598 * 1 2 3 27 27 H 1.09008 * 109.47115 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46751 * 299.99831 * 1 2 3 29 29 H 1.07998 * 120.01930 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.96637 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.95008 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47110 * 142.21542 * 10 9 7 33 33 H 1.08998 * 109.47109 * 22.21592 * 10 9 7 34 34 H 0.97003 * 120.00082 * 186.95848 * 15 14 12 35 35 H 1.09003 * 109.46879 * 94.78881 * 24 23 20 36 36 H 1.08995 * 109.47731 * 214.79606 * 24 23 20 37 37 H 1.09002 * 109.47158 * 334.79844 * 24 23 20 38 38 H 1.08999 * 109.47344 * 95.15517 * 25 23 20 39 39 H 1.09003 * 109.47034 * 215.15473 * 25 23 20 40 40 H 1.09000 * 109.46991 * 335.15205 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9200 3.6051 -0.0011 6 6 3.3008 3.6773 -0.0005 7 6 4.0561 2.5181 0.0062 8 17 5.7896 2.6120 0.0141 9 6 3.4309 1.2847 0.0008 10 6 4.2535 0.0220 0.0019 11 7 4.3694 -0.4864 -1.3671 12 6 3.2717 -1.0059 -1.9999 13 1 2.2803 -0.7710 -1.6415 14 6 3.4330 -1.8343 -3.1019 15 7 4.5272 -2.5546 -3.2292 16 14 2.0972 -1.9268 -4.4045 17 1 2.3525 -0.9024 -5.4488 18 1 2.1020 -3.2766 -5.0234 19 1 0.7753 -1.6748 -3.7765 20 16 5.8280 -0.4330 -2.1496 21 8 6.5680 0.6201 -1.5474 22 8 6.2966 -1.7728 -2.2165 23 7 5.5305 0.0369 -3.7094 24 6 5.4250 1.4606 -4.0381 25 6 5.3728 -0.9711 -4.7607 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2127 2.3200 -0.0014 30 1 1.3325 4.5113 -0.0011 31 1 3.7904 4.6399 -0.0005 32 1 3.7685 -0.7271 0.6278 33 1 5.2472 0.2361 0.3953 34 1 4.6864 -3.0550 -4.0448 35 1 6.3919 1.8263 -4.3840 36 1 4.6822 1.5982 -4.8237 37 1 5.1226 2.0169 -3.1508 38 1 4.3137 -1.1867 -4.9014 39 1 5.7936 -0.5932 -5.6925 40 1 5.8939 -1.8834 -4.4703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331233447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:26 Heat of formation + Delta-G solvation = -11.979022 kcal Electronic energy + Delta-G solvation = -29203.890401 eV Core-core repulsion = 25175.459342 eV Total energy + Delta-G solvation = -4028.431059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.074 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.99182 -37.34123 -35.94296 -35.64083 -35.34311 -34.90411 -33.86443 -32.19969 -30.40049 -29.67177 -27.26576 -26.86580 -25.85270 -23.67851 -23.22476 -21.87495 -21.00063 -18.84713 -17.83323 -17.16885 -16.26294 -15.93483 -15.60949 -15.44439 -15.28340 -14.87614 -14.60344 -14.28395 -14.02111 -13.61494 -13.56529 -13.24115 -12.92410 -12.56216 -12.17974 -12.03871 -11.87143 -11.72909 -11.62584 -11.39838 -11.34431 -11.19574 -10.94426 -10.87519 -10.53642 -10.46718 -10.29877 -10.18263 -9.95490 -9.87089 -9.73467 -9.46236 -9.04938 -8.31055 -7.90867 -7.73334 -7.55202 -6.05843 -3.64016 1.43087 1.64640 2.41452 2.65072 3.21589 3.29817 3.30745 3.67574 3.90733 4.23514 4.53148 4.91418 4.97257 5.13723 5.19782 5.25778 5.29604 5.36528 5.58882 5.63340 5.69639 5.85032 5.99773 6.05659 6.16751 6.18979 6.41323 6.46274 6.51711 6.54511 6.57283 6.68248 6.71398 6.86530 6.94790 7.14360 7.25688 7.69913 7.71563 7.99033 8.50563 9.08461 9.49600 10.76209 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.007592 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.731521 B = 3687.179718 C = 5134.394803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.286 6.286 3 C 0.162 3.838 4 C -0.217 4.217 5 C -0.078 4.078 6 C -0.160 4.160 7 C 0.000 4.000 8 Cl -0.026 7.026 9 C -0.111 4.111 10 C 0.176 3.824 11 N -0.858 5.858 12 C -0.262 4.262 13 H 0.105 0.895 14 C -0.011 4.011 15 N -0.814 5.814 16 Si 0.900 3.100 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.276 1.276 20 S 2.737 3.263 21 O -1.034 7.034 22 O -0.945 6.945 23 N -0.994 5.994 24 C 0.113 3.887 25 C 0.098 3.902 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.271 0.729 35 H 0.035 0.965 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.023 0.977 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.608 9.451 3.492 12.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.198 6.198 3 C 0.115 3.885 4 C -0.236 4.236 5 C -0.096 4.096 6 C -0.179 4.179 7 C -0.028 4.028 8 Cl 0.004 6.996 9 C -0.115 4.115 10 C 0.047 3.953 11 N -0.687 5.687 12 C -0.398 4.398 13 H 0.122 0.878 14 C -0.215 4.215 15 N -0.460 5.460 16 Si 0.727 3.273 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.202 1.202 20 S 2.752 3.248 21 O -1.017 7.017 22 O -0.928 6.928 23 N -0.830 5.830 24 C -0.035 4.035 25 C -0.048 4.048 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.351 8.857 3.767 11.012 hybrid contribution -1.403 0.401 -1.141 1.853 sum -6.754 9.257 2.626 11.756 Atomic orbital electron populations 1.23030 0.79398 1.03879 1.00595 1.86335 1.20298 1.25739 1.87432 1.18591 0.91223 0.84462 0.94174 1.21216 0.99908 0.92393 1.10100 1.20717 0.93732 0.96957 0.98234 1.20859 0.93688 0.97074 1.06298 1.20800 0.86878 0.93587 1.01520 1.98454 1.06785 1.98219 1.96187 1.19695 0.91655 0.96074 1.04070 1.19842 0.98267 0.90808 0.86350 1.53696 1.28585 1.69187 1.17206 1.19435 0.88048 1.21978 1.10312 0.87799 1.25360 0.98550 0.96144 1.01443 1.70979 1.24969 1.23898 1.26135 0.86470 0.81421 0.77304 0.82091 1.20542 1.21116 1.20169 1.05190 0.74320 0.73480 0.71852 1.93468 1.72276 1.58954 1.77032 1.93608 1.79826 1.34853 1.84522 1.57815 1.88182 1.10300 1.26690 1.21053 0.99415 0.82293 1.00702 1.22047 1.00867 0.93495 0.88431 0.92892 0.88312 0.93261 0.85543 0.85689 0.85499 0.90452 0.90209 0.91625 0.94602 0.93359 0.92062 0.93920 0.95857 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.32 16 2 O -0.29 -4.96 7.03 -19.43 -0.14 -5.09 16 3 C 0.16 2.80 6.22 -39.22 -0.24 2.56 16 4 C -0.22 -3.06 9.04 -39.43 -0.36 -3.42 16 5 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 6 C -0.16 -2.33 9.83 -39.53 -0.39 -2.72 16 7 C 0.00 0.00 6.31 -39.52 -0.25 -0.25 16 8 Cl -0.03 -0.48 24.12 -51.86 -1.25 -1.73 16 9 C -0.11 -2.11 5.28 -104.44 -0.55 -2.66 16 10 C 0.18 3.75 5.25 -5.20 -0.03 3.73 16 11 N -0.86 -20.79 3.03 -61.09 -0.19 -20.97 16 12 C -0.26 -6.52 9.04 -15.06 -0.14 -6.65 16 13 H 0.10 2.51 4.79 -52.48 -0.25 2.25 16 14 C -0.01 -0.29 3.30 -17.43 -0.06 -0.35 16 15 N -0.81 -21.86 6.98 55.49 0.39 -21.48 16 16 Si 0.90 19.90 27.22 -169.99 -4.63 15.27 16 17 H -0.28 -6.08 6.94 56.52 0.39 -5.69 16 18 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 S 2.74 68.81 5.24 -107.50 -0.56 68.24 16 21 O -1.03 -25.33 12.90 -57.17 -0.74 -26.06 16 22 O -0.95 -27.12 13.83 -57.17 -0.79 -27.91 16 23 N -0.99 -22.79 3.08 -129.20 -0.40 -23.19 16 24 C 0.11 2.20 10.37 59.84 0.62 2.82 16 25 C 0.10 2.17 8.22 59.85 0.49 2.66 16 26 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 27 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 28 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 29 H 0.13 1.44 6.30 -52.49 -0.33 1.10 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.08 1.62 7.77 -51.93 -0.40 1.21 16 33 H 0.08 1.69 5.69 -51.93 -0.30 1.39 16 34 H 0.27 6.91 6.77 -40.82 -0.28 6.64 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 37 H 0.06 1.21 7.76 -51.93 -0.40 0.81 16 38 H 0.04 0.97 2.90 -51.93 -0.15 0.81 16 39 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 40 H 0.11 2.51 5.03 -51.93 -0.26 2.25 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -31.31 328.24 -8.17 -39.48 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.51 Total: 2.87 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -0.30 Total: -4.38 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: -0.20 Total: -65.64 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -1.66 Total: -59.07 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.63 Total: 15.27 kcal Atomic # 16 Polarization: 68.81 SS G_CDS: -0.56 Total: 68.24 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.25 Total: -1.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.31 -8.17 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331233447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.499 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds