Wall clock time and date at job start Wed Apr 1 2020 04:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 117.00121 * 2 1 4 4 C 1.38763 * 120.04668 * 359.97438 * 3 2 1 5 5 C 1.38128 * 119.97025 * 180.02562 * 4 3 2 6 6 C 1.38271 * 120.06904 * 359.97438 * 5 4 3 7 7 C 1.38358 * 120.09399 * 359.72854 * 6 5 4 8 8 Cl 1.73607 * 119.98467 * 180.27742 * 7 6 5 9 9 C 1.38282 * 120.03380 * 0.55407 * 7 6 5 10 10 C 1.50699 * 120.03726 * 179.72307 * 9 7 6 11 11 N 1.46497 * 109.46896 * 262.21353 * 10 9 7 12 12 C 1.36935 * 120.00422 * 290.55963 * 11 10 9 13 13 H 1.08004 * 119.99911 * 19.21083 * 12 11 10 14 14 C 1.38810 * 120.00540 * 199.21289 * 12 11 10 15 15 N 1.31617 * 119.99785 * 27.66724 * 14 12 11 16 16 Si 1.86800 * 120.00282 * 207.67805 * 14 12 11 17 17 H 1.48498 * 109.47308 * 89.99303 * 16 14 12 18 18 H 1.48494 * 109.47077 * 209.99966 * 16 14 12 19 19 H 1.48506 * 109.46669 * 329.99324 * 16 14 12 20 20 S 1.65609 * 119.99936 * 110.56080 * 11 10 9 21 21 O 1.42103 * 106.39935 * 335.03943 * 20 11 10 22 22 O 1.42101 * 106.39822 * 107.95759 * 20 11 10 23 23 N 1.65593 * 107.21804 * 221.50089 * 20 11 10 24 24 C 1.46496 * 120.00418 * 84.86086 * 23 20 11 25 25 C 1.46503 * 119.99882 * 264.86570 * 23 20 11 26 26 H 1.08995 * 109.47155 * 59.99598 * 1 2 3 27 27 H 1.09008 * 109.47115 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46751 * 299.99831 * 1 2 3 29 29 H 1.07998 * 120.01930 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.96637 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.95008 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47110 * 142.21542 * 10 9 7 33 33 H 1.08998 * 109.47109 * 22.21592 * 10 9 7 34 34 H 0.97003 * 120.00082 * 186.95848 * 15 14 12 35 35 H 1.09003 * 109.46879 * 94.78881 * 24 23 20 36 36 H 1.08995 * 109.47731 * 214.79606 * 24 23 20 37 37 H 1.09002 * 109.47158 * 334.79844 * 24 23 20 38 38 H 1.08999 * 109.47344 * 95.15517 * 25 23 20 39 39 H 1.09003 * 109.47034 * 215.15473 * 25 23 20 40 40 H 1.09000 * 109.46991 * 335.15205 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9200 3.6051 -0.0011 6 6 3.3008 3.6773 -0.0005 7 6 4.0561 2.5181 0.0062 8 17 5.7896 2.6120 0.0141 9 6 3.4309 1.2847 0.0008 10 6 4.2535 0.0220 0.0019 11 7 4.3694 -0.4864 -1.3671 12 6 3.2717 -1.0059 -1.9999 13 1 2.2803 -0.7710 -1.6415 14 6 3.4330 -1.8343 -3.1019 15 7 4.5272 -2.5546 -3.2292 16 14 2.0972 -1.9268 -4.4045 17 1 2.3525 -0.9024 -5.4488 18 1 2.1020 -3.2766 -5.0234 19 1 0.7753 -1.6748 -3.7765 20 16 5.8280 -0.4330 -2.1496 21 8 6.5680 0.6201 -1.5474 22 8 6.2966 -1.7728 -2.2165 23 7 5.5305 0.0369 -3.7094 24 6 5.4250 1.4606 -4.0381 25 6 5.3728 -0.9711 -4.7607 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2127 2.3200 -0.0014 30 1 1.3325 4.5113 -0.0011 31 1 3.7904 4.6399 -0.0005 32 1 3.7685 -0.7271 0.6278 33 1 5.2472 0.2361 0.3953 34 1 4.6864 -3.0550 -4.0448 35 1 6.3919 1.8263 -4.3840 36 1 4.6822 1.5982 -4.8237 37 1 5.1226 2.0169 -3.1508 38 1 4.3137 -1.1867 -4.9014 39 1 5.7936 -0.5932 -5.6925 40 1 5.8939 -1.8834 -4.4703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331233447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:25 Heat of formation + Delta-G solvation = -32.733134 kcal Electronic energy + Delta-G solvation = -29204.790367 eV Core-core repulsion = 25175.459342 eV Total energy + Delta-G solvation = -4029.331025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.074 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.19336 -38.55914 -37.80904 -37.17423 -36.93541 -36.62894 -35.90263 -33.91113 -31.88836 -30.82677 -28.69212 -28.18139 -27.42250 -25.34360 -24.96532 -23.04660 -22.33437 -20.70636 -19.16636 -18.84204 -17.84519 -17.51184 -17.21783 -16.83094 -16.62536 -16.51461 -16.06655 -15.79637 -15.65970 -15.21594 -14.82173 -14.71688 -14.45019 -14.08809 -13.79579 -13.46802 -13.40667 -13.34867 -13.13888 -13.01406 -12.73422 -12.59816 -12.52470 -12.25708 -12.14047 -11.99236 -11.98672 -11.89984 -11.72068 -11.63928 -11.32300 -11.25085 -10.81754 -9.66702 -9.49651 -9.40061 -9.02941 -7.94766 -5.56568 0.19762 0.44306 0.60180 1.35852 1.47883 1.50678 1.58619 2.39983 2.56815 2.68077 2.79769 3.05360 3.34094 3.83838 3.97550 4.11007 4.22332 4.29671 4.42995 4.49010 4.50212 4.51743 4.56509 4.65128 4.73406 4.79538 4.82909 4.91054 4.95623 4.96969 5.19936 5.30248 5.35322 5.39911 5.44194 5.55528 5.75376 5.83643 6.24391 6.58125 6.61164 7.22171 7.61291 8.88501 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.007592 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.731521 B = 3687.179718 C = 5134.394803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.319 6.319 3 C 0.149 3.851 4 C -0.210 4.210 5 C -0.062 4.062 6 C -0.159 4.159 7 C -0.014 4.014 8 Cl -0.048 7.048 9 C -0.142 4.142 10 C 0.175 3.825 11 N -0.866 5.866 12 C -0.267 4.267 13 H 0.112 0.888 14 C -0.048 4.048 15 N -0.850 5.850 16 Si 0.950 3.050 17 H -0.270 1.270 18 H -0.291 1.291 19 H -0.266 1.266 20 S 2.742 3.258 21 O -1.035 7.035 22 O -0.989 6.989 23 N -1.000 6.000 24 C 0.109 3.891 25 C 0.100 3.900 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.150 0.850 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.269 0.731 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.038 0.962 39 H 0.055 0.945 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 12.071 2.836 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.232 6.232 3 C 0.102 3.898 4 C -0.228 4.228 5 C -0.080 4.080 6 C -0.178 4.178 7 C -0.042 4.042 8 Cl -0.018 7.018 9 C -0.145 4.145 10 C 0.048 3.952 11 N -0.696 5.696 12 C -0.403 4.403 13 H 0.129 0.871 14 C -0.249 4.249 15 N -0.496 5.496 16 Si 0.776 3.224 17 H -0.196 1.196 18 H -0.217 1.217 19 H -0.190 1.190 20 S 2.757 3.243 21 O -1.019 7.019 22 O -0.972 6.972 23 N -0.837 5.837 24 C -0.037 4.037 25 C -0.046 4.046 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.094 0.906 29 H 0.177 0.823 30 H 0.188 0.812 31 H 0.168 0.832 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.074 11.498 3.130 14.394 hybrid contribution -0.630 -0.358 -0.859 1.124 sum -8.705 11.140 2.271 14.319 Atomic orbital electron populations 1.23317 0.77045 1.05039 1.02292 1.86261 1.22881 1.26456 1.87573 1.18767 0.90814 0.85585 0.94660 1.21605 1.01424 0.91496 1.08302 1.21242 0.93198 0.98245 0.95303 1.21197 0.94519 0.96856 1.05245 1.20965 0.85998 0.94336 1.02884 1.98438 1.08770 1.98220 1.96407 1.19496 0.92556 0.95109 1.07372 1.19797 0.98325 0.92222 0.84875 1.53617 1.28077 1.69769 1.18154 1.19737 0.88501 1.21690 1.10419 0.87104 1.26012 1.00211 0.95819 1.02843 1.71087 1.26916 1.25085 1.26548 0.85664 0.79672 0.77041 0.80018 1.19592 1.21701 1.19033 1.04710 0.74478 0.72683 0.72423 1.93461 1.72628 1.58413 1.77364 1.93558 1.80920 1.37307 1.85422 1.57659 1.88203 1.11845 1.26032 1.21232 1.01102 0.80231 1.01154 1.21961 1.00554 0.92844 0.89273 0.91965 0.87665 0.90586 0.82306 0.81221 0.83203 0.91435 0.91179 0.91861 0.92859 0.91266 0.92626 0.94353 0.92692 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.50 16 2 O -0.32 -10.70 7.03 -92.43 -0.65 -11.35 16 3 C 0.15 4.89 6.22 22.50 0.14 5.03 16 4 C -0.21 -5.08 9.04 22.37 0.20 -4.87 16 5 C -0.06 -1.31 10.04 22.25 0.22 -1.09 16 6 C -0.16 -4.15 9.83 22.31 0.22 -3.93 16 7 C -0.01 -0.48 6.31 22.31 0.14 -0.34 16 8 Cl -0.05 -1.77 24.12 -2.72 -0.07 -1.83 16 9 C -0.14 -5.36 5.28 -19.75 -0.10 -5.46 16 10 C 0.18 7.75 5.25 85.63 0.45 8.20 16 11 N -0.87 -42.92 3.03 -347.18 -1.05 -43.97 16 12 C -0.27 -13.43 9.04 84.03 0.76 -12.67 16 13 H 0.11 5.34 4.79 -2.91 -0.01 5.32 16 14 C -0.05 -2.43 3.30 84.86 0.28 -2.15 16 15 N -0.85 -46.73 6.98 21.65 0.15 -46.58 16 16 Si 0.95 40.20 27.22 68.60 1.87 42.07 16 17 H -0.27 -10.94 6.94 99.48 0.69 -10.25 16 18 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 20 S 2.74 141.19 5.24 -56.49 -0.30 140.89 16 21 O -1.04 -51.87 12.90 -128.00 -1.65 -53.52 16 22 O -0.99 -59.06 13.83 -128.00 -1.77 -60.83 16 23 N -1.00 -45.53 3.08 -562.69 -1.73 -47.26 16 24 C 0.11 4.08 10.37 127.77 1.32 5.41 16 25 C 0.10 4.39 8.22 127.77 1.05 5.44 16 26 H 0.06 1.24 7.66 -2.39 -0.02 1.22 16 27 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.08 1.24 7.66 -2.39 -0.02 1.22 16 29 H 0.16 2.76 6.30 -2.91 -0.02 2.74 16 30 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.07 2.99 7.77 -2.39 -0.02 2.97 16 33 H 0.07 3.13 5.69 -2.39 -0.01 3.12 16 34 H 0.27 14.16 6.77 -92.71 -0.63 13.53 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.07 2.28 8.11 -2.39 -0.02 2.26 16 37 H 0.05 2.14 7.76 -2.39 -0.02 2.12 16 38 H 0.04 1.70 2.90 -2.39 -0.01 1.69 16 39 H 0.05 2.02 8.11 -2.39 -0.02 2.00 16 40 H 0.08 4.05 5.03 -2.39 -0.01 4.04 16 Total: -1.00 -69.71 328.24 1.81 -67.89 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 1.21 Total: 19.44 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.80 Total: -4.95 kcal Atomic # 7 Polarization: -135.18 SS G_CDS: -2.63 Total: -137.82 kcal Atomic # 8 Polarization: -121.63 SS G_CDS: -4.07 Total: -125.70 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.87 Total: 42.07 kcal Atomic # 16 Polarization: 141.19 SS G_CDS: -0.30 Total: 140.89 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.07 Total: -1.83 kcal Total: -69.71 1.81 -67.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331233447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.162 kcal (2) G-P(sol) polarization free energy of solvation -69.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds