Wall clock time and date at job start Wed Apr 1 2020 05:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 120.00116 * 2 1 4 4 H 1.48498 * 109.46846 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46860 * 299.99708 * 3 2 1 6 6 H 1.48498 * 109.47041 * 59.99393 * 3 2 1 7 7 C 1.38954 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99993 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99710 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00325 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99720 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.46813 * 179.97438 * 12 10 9 14 14 C 1.34772 * 119.99914 * 179.97438 * 13 12 10 15 15 O 1.21624 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.47285 * 119.99997 * 180.02562 * 14 13 12 17 17 C 1.37960 * 126.81142 * 0.02627 * 16 14 13 18 18 N 1.34155 * 107.89086 * 179.97438 * 17 16 14 19 19 H 0.96996 * 125.16286 * 180.02562 * 18 17 16 20 20 N 1.39771 * 109.67654 * 359.97438 * 18 17 16 21 21 C 1.31371 * 109.07773 * 0.02562 * 20 18 17 22 22 C 1.48281 * 126.51126 * 180.26144 * 21 20 18 23 23 C 1.39399 * 120.11102 * 144.41378 * 22 21 20 24 24 C 1.37982 * 119.88502 * 179.72412 * 23 22 21 25 25 C 1.38451 * 120.11199 * 0.54792 * 24 23 22 26 26 Cl 1.73594 * 119.88565 * 179.74594 * 25 24 23 27 27 C 1.38446 * 120.22422 * 359.72898 * 25 24 23 28 28 C 1.37978 * 120.11568 * 359.97438 * 27 25 24 29 29 H 0.97003 * 119.99870 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00008 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46866 * 60.00132 * 12 10 9 32 32 H 1.08994 * 109.47106 * 299.99501 * 12 10 9 33 33 H 0.97001 * 120.00217 * 0.02562 * 13 12 10 34 34 H 1.08003 * 126.05706 * 0.02562 * 17 16 14 35 35 H 1.08001 * 120.05262 * 359.97277 * 23 22 21 36 36 H 1.07995 * 119.94211 * 180.27790 * 24 23 22 37 37 H 1.08001 * 119.94059 * 179.97438 * 27 25 24 38 38 H 1.08000 * 120.06031 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0000 13 7 2.1957 -5.9765 -0.0005 14 6 1.7464 -7.2471 -0.0006 15 8 0.5507 -7.4694 -0.0007 16 6 2.7035 -8.3666 -0.0005 17 6 4.0802 -8.2772 0.0001 18 7 4.5742 -9.5245 0.0005 19 1 5.5172 -9.7518 0.0013 20 7 3.5239 -10.4467 0.0007 21 6 2.3821 -9.7970 -0.0001 22 6 1.0259 -10.3966 0.0053 23 6 -0.0089 -9.7792 0.7062 24 6 -1.2704 -10.3381 0.7033 25 6 -1.5067 -11.5161 0.0153 26 17 -3.0945 -12.2177 0.0211 27 6 -0.4810 -12.1362 -0.6776 28 6 0.7827 -11.5822 -0.6860 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6174 -4.9205 -0.8903 32 1 0.6167 -4.9209 0.8897 33 1 3.1494 -5.7993 -0.0001 34 1 4.6580 -7.3647 0.0010 35 1 0.1756 -8.8628 1.2472 36 1 -2.0738 -9.8582 1.2423 37 1 -0.6703 -13.0552 -1.2124 38 1 1.5821 -12.0665 -1.2272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344179036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:57 Heat of formation + Delta-G solvation = 19.069461 kcal Electronic energy + Delta-G solvation = -26256.092065 eV Core-core repulsion = 22125.856169 eV Total energy + Delta-G solvation = -4130.235896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41469 -39.26168 -39.13626 -38.02110 -36.61263 -34.51991 -33.75923 -32.88301 -31.45819 -31.25583 -30.68165 -29.79231 -27.51607 -24.68533 -23.70073 -23.24577 -22.56463 -20.45665 -19.84790 -19.67798 -18.71291 -18.00451 -17.22932 -16.71570 -15.79457 -15.66547 -15.50282 -15.38579 -15.18310 -14.76399 -14.52910 -14.21151 -14.10801 -13.79089 -13.63851 -13.50630 -13.49634 -12.96434 -12.22907 -12.03672 -11.87072 -11.78311 -11.73055 -11.66954 -11.23739 -11.17575 -10.87836 -10.44371 -10.36203 -10.17684 -9.82132 -9.68591 -9.13762 -9.06161 -8.76741 -8.68178 -8.45630 -8.14153 -6.55252 -3.97389 0.66462 1.25505 1.31264 1.96931 2.06049 2.38857 3.07229 3.19542 3.24900 3.35982 3.41647 3.62255 3.70692 4.05715 4.10389 4.35585 4.69717 4.77936 4.83029 4.93619 5.10916 5.13539 5.18211 5.27741 5.37744 5.54806 5.77668 5.89342 5.91384 5.93757 6.03278 6.12519 6.24550 6.37491 6.60797 6.70351 6.79933 7.18935 7.42508 7.78968 7.88239 8.39437 8.44535 9.00749 9.35356 9.82658 10.61579 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.002188 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.233064 B =12794.248532 C =14725.644783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.600 6.600 12 C 0.111 3.889 13 N -0.703 5.703 14 C 0.589 3.411 15 O -0.542 6.542 16 C -0.275 4.275 17 C 0.113 3.887 18 N -0.463 5.463 19 H 0.445 0.555 20 N -0.283 5.283 21 C 0.171 3.829 22 C -0.024 4.024 23 C -0.037 4.037 24 C -0.118 4.118 25 C -0.021 4.021 26 Cl -0.076 7.076 27 C -0.126 4.126 28 C -0.076 4.076 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.407 0.593 34 H 0.193 0.807 35 H 0.156 0.844 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -21.940 0.339 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.487 6.487 12 C -0.017 4.017 13 N -0.356 5.356 14 C 0.376 3.624 15 O -0.422 6.422 16 C -0.291 4.291 17 C -0.037 4.037 18 N -0.169 5.169 19 H 0.289 0.711 20 N -0.104 5.104 21 C 0.002 3.998 22 C -0.026 4.026 23 C -0.056 4.056 24 C -0.137 4.137 25 C -0.048 4.048 26 Cl -0.048 7.048 27 C -0.145 4.145 28 C -0.095 4.095 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.245 0.755 34 H 0.210 0.790 35 H 0.173 0.827 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.514 -23.065 0.336 23.204 hybrid contribution 0.357 1.733 -0.126 1.774 sum 2.871 -21.332 0.211 21.525 Atomic orbital electron populations 1.69621 1.06014 1.28479 1.49220 1.25335 0.95667 0.99962 0.96760 0.85763 0.79654 0.80838 0.77865 1.19153 1.20593 1.20594 1.19769 0.93464 0.81976 1.48242 0.87626 1.41809 1.09529 1.04502 1.62431 1.19747 0.88277 0.85017 0.85630 1.90480 1.13755 1.86869 1.57612 1.20952 0.91781 0.85495 1.03429 1.45527 1.11362 1.04393 1.74364 1.17075 0.87436 0.81540 0.76319 1.90734 1.15841 1.84200 1.51429 1.21295 0.92184 0.93278 1.22295 1.23193 0.94529 0.90255 0.95734 1.45934 1.09349 1.03513 1.58058 0.71054 1.77323 0.93887 1.14223 1.24969 1.21717 0.91907 0.89793 0.96349 1.17723 0.89202 0.95233 1.00481 1.21636 0.90432 0.97858 0.95666 1.21015 0.97981 0.94360 1.00357 1.21103 0.86444 0.96055 1.01226 1.98365 1.24916 1.83907 1.97563 1.20852 0.91770 1.01034 1.00823 1.21102 0.96410 0.94114 0.97917 0.91590 0.76990 0.89668 0.89653 0.75535 0.78978 0.82695 0.84582 0.84859 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 13.05 55.50 0.72 -22.65 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.31 -8.05 9.68 -14.93 -0.14 -8.19 16 8 H 0.11 2.90 7.16 -52.49 -0.38 2.53 16 9 N -0.55 -13.10 5.29 -10.96 -0.06 -13.15 16 10 C 0.43 9.29 7.85 -10.98 -0.09 9.20 16 11 O -0.60 -14.49 15.24 5.55 0.08 -14.40 16 12 C 0.11 1.90 6.15 -5.19 -0.03 1.87 16 13 N -0.70 -10.68 5.52 -62.61 -0.35 -11.03 16 14 C 0.59 8.75 7.67 -12.58 -0.10 8.65 16 15 O -0.54 -9.10 12.48 5.26 0.07 -9.03 16 16 C -0.28 -3.46 6.26 -102.95 -0.64 -4.10 16 17 C 0.11 1.02 11.50 -16.64 -0.19 0.83 16 18 N -0.46 -3.79 7.20 30.81 0.22 -3.57 16 19 H 0.44 1.94 8.96 -182.85 -1.64 0.30 16 20 N -0.28 -3.25 12.63 34.57 0.44 -2.81 16 21 C 0.17 2.18 6.94 -80.56 -0.56 1.62 16 22 C -0.02 -0.31 5.73 -104.91 -0.60 -0.91 16 23 C -0.04 -0.47 7.76 -39.24 -0.30 -0.77 16 24 C -0.12 -1.38 9.81 -39.60 -0.39 -1.77 16 25 C -0.02 -0.23 6.32 -39.43 -0.25 -0.48 16 26 Cl -0.08 -0.77 28.95 -51.86 -1.50 -2.27 16 27 C -0.13 -1.28 9.81 -39.60 -0.39 -1.67 16 28 C -0.08 -0.83 9.76 -39.25 -0.38 -1.21 16 29 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.40 9.13 7.90 -40.82 -0.32 8.80 16 31 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.41 5.86 6.39 -40.82 -0.26 5.60 16 34 H 0.19 1.15 7.48 -52.48 -0.39 0.76 16 35 H 0.16 2.15 5.69 -52.49 -0.30 1.85 16 36 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -31.91 354.34 -8.76 -40.67 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -4.54 Total: 14.23 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -4.17 Total: 3.64 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.98 Total: -53.21 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.15 Total: -23.43 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.91 -8.76 -40.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344179036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.740 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds