Wall clock time and date at job start Wed Apr 1 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 120.00116 * 2 1 4 4 H 1.48498 * 109.46846 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46860 * 299.99708 * 3 2 1 6 6 H 1.48498 * 109.47041 * 59.99393 * 3 2 1 7 7 C 1.38954 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99993 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99710 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00325 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99720 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.46813 * 179.97438 * 12 10 9 14 14 C 1.34772 * 119.99914 * 179.97438 * 13 12 10 15 15 O 1.21624 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.47285 * 119.99997 * 180.02562 * 14 13 12 17 17 C 1.37960 * 126.81142 * 0.02627 * 16 14 13 18 18 N 1.34155 * 107.89086 * 179.97438 * 17 16 14 19 19 H 0.96996 * 125.16286 * 180.02562 * 18 17 16 20 20 N 1.39771 * 109.67654 * 359.97438 * 18 17 16 21 21 C 1.31371 * 109.07773 * 0.02562 * 20 18 17 22 22 C 1.48281 * 126.51126 * 180.26144 * 21 20 18 23 23 C 1.39399 * 120.11102 * 144.41378 * 22 21 20 24 24 C 1.37982 * 119.88502 * 179.72412 * 23 22 21 25 25 C 1.38451 * 120.11199 * 0.54792 * 24 23 22 26 26 Cl 1.73594 * 119.88565 * 179.74594 * 25 24 23 27 27 C 1.38446 * 120.22422 * 359.72898 * 25 24 23 28 28 C 1.37978 * 120.11568 * 359.97438 * 27 25 24 29 29 H 0.97003 * 119.99870 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00008 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46866 * 60.00132 * 12 10 9 32 32 H 1.08994 * 109.47106 * 299.99501 * 12 10 9 33 33 H 0.97001 * 120.00217 * 0.02562 * 13 12 10 34 34 H 1.08003 * 126.05706 * 0.02562 * 17 16 14 35 35 H 1.08001 * 120.05262 * 359.97277 * 23 22 21 36 36 H 1.07995 * 119.94211 * 180.27790 * 24 23 22 37 37 H 1.08001 * 119.94059 * 179.97438 * 27 25 24 38 38 H 1.08000 * 120.06031 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0000 13 7 2.1957 -5.9765 -0.0005 14 6 1.7464 -7.2471 -0.0006 15 8 0.5507 -7.4694 -0.0007 16 6 2.7035 -8.3666 -0.0005 17 6 4.0802 -8.2772 0.0001 18 7 4.5742 -9.5245 0.0005 19 1 5.5172 -9.7518 0.0013 20 7 3.5239 -10.4467 0.0007 21 6 2.3821 -9.7970 -0.0001 22 6 1.0259 -10.3966 0.0053 23 6 -0.0089 -9.7792 0.7062 24 6 -1.2704 -10.3381 0.7033 25 6 -1.5067 -11.5161 0.0153 26 17 -3.0945 -12.2177 0.0211 27 6 -0.4810 -12.1362 -0.6776 28 6 0.7827 -11.5822 -0.6860 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6174 -4.9205 -0.8903 32 1 0.6167 -4.9209 0.8897 33 1 3.1494 -5.7993 -0.0001 34 1 4.6580 -7.3647 0.0010 35 1 0.1756 -8.8628 1.2472 36 1 -2.0738 -9.8582 1.2423 37 1 -0.6703 -13.0552 -1.2124 38 1 1.5821 -12.0665 -1.2272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344179036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:56 Heat of formation + Delta-G solvation = -3.060371 kcal Electronic energy + Delta-G solvation = -26257.051687 eV Core-core repulsion = 22125.856169 eV Total energy + Delta-G solvation = -4131.195518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.27159 -40.63353 -40.02654 -39.56136 -37.44073 -36.20623 -35.25527 -33.73330 -33.34847 -32.13951 -31.66053 -30.64702 -28.96001 -26.45047 -24.55728 -24.19330 -23.54221 -21.47816 -21.25681 -20.80565 -20.11428 -19.51977 -18.12733 -17.90122 -17.08295 -16.79827 -16.75610 -16.58896 -16.29303 -16.21776 -15.78444 -15.62938 -15.25263 -14.89734 -14.88031 -14.49525 -14.39725 -14.08774 -13.73879 -13.52658 -13.45990 -12.89945 -12.76201 -12.62620 -12.58230 -12.41605 -12.09830 -12.08777 -11.72656 -11.54981 -10.98853 -10.96028 -10.51238 -10.18964 -10.06358 -9.94320 -9.84195 -9.33063 -8.48717 -5.98366 -0.22041 0.39174 0.48854 1.11563 1.15357 1.36970 1.44652 1.58108 1.68512 1.94163 2.10866 2.34995 2.37135 2.73459 3.17475 3.19185 3.24271 3.55501 3.89349 3.97714 4.08148 4.22030 4.27409 4.33552 4.40588 4.51424 4.53847 4.56121 4.70521 4.92355 5.04840 5.24723 5.32766 5.38206 5.42090 5.51029 5.79642 5.95222 6.17993 6.37020 6.50392 6.65173 7.06544 7.27462 7.48735 7.97806 8.68415 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.002188 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.233064 B =12794.248532 C =14725.644783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.088 0.912 9 N -0.562 5.562 10 C 0.435 3.565 11 O -0.622 6.622 12 C 0.125 3.875 13 N -0.703 5.703 14 C 0.591 3.409 15 O -0.566 6.566 16 C -0.310 4.310 17 C 0.142 3.858 18 N -0.443 5.443 19 H 0.463 0.537 20 N -0.295 5.295 21 C 0.159 3.841 22 C -0.040 4.040 23 C -0.051 4.051 24 C -0.126 4.126 25 C -0.028 4.028 26 Cl -0.068 7.068 27 C -0.121 4.121 28 C -0.076 4.076 29 H 0.279 0.721 30 H 0.398 0.602 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.412 0.588 34 H 0.227 0.773 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.158 0.842 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 -22.763 -0.025 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.106 0.894 9 N -0.197 5.197 10 C 0.222 3.778 11 O -0.510 6.510 12 C -0.003 4.003 13 N -0.356 5.356 14 C 0.380 3.620 15 O -0.447 6.447 16 C -0.325 4.325 17 C -0.011 4.011 18 N -0.150 5.150 19 H 0.312 0.688 20 N -0.116 5.116 21 C -0.009 4.009 22 C -0.042 4.042 23 C -0.070 4.070 24 C -0.144 4.144 25 C -0.055 4.055 26 Cl -0.039 7.039 27 C -0.139 4.139 28 C -0.096 4.096 29 H 0.088 0.912 30 H 0.233 0.767 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.250 0.750 34 H 0.243 0.757 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.175 0.825 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.618 -23.933 -0.026 24.205 hybrid contribution 0.078 1.867 -0.009 1.869 sum 3.696 -22.066 -0.035 22.373 Atomic orbital electron populations 1.69688 1.07009 1.29476 1.49586 1.26113 0.96503 1.02673 0.95980 0.84833 0.78225 0.76890 0.78179 1.19282 1.19834 1.19813 1.19765 0.92963 0.83507 1.50032 0.89430 1.41868 1.09617 1.04676 1.63556 1.20441 0.88150 0.85887 0.83300 1.90456 1.15052 1.87567 1.57961 1.20744 0.91636 0.83631 1.04303 1.45458 1.11166 1.04048 1.74977 1.17356 0.87582 0.81630 0.75414 1.90728 1.17062 1.84478 1.52460 1.21167 0.93268 0.92468 1.25630 1.23599 0.93457 0.91360 0.92663 1.45981 1.09893 1.02921 1.56233 0.68786 1.77273 0.94103 1.14993 1.25269 1.21809 0.92284 0.90033 0.96816 1.17928 0.89395 0.95990 1.00925 1.21525 0.91239 0.97795 0.96487 1.21113 0.97800 0.94840 1.00692 1.21201 0.87107 0.95952 1.01238 1.98366 1.24359 1.83671 1.97532 1.21135 0.91151 1.01519 1.00101 1.21285 0.97139 0.93577 0.97584 0.91171 0.76746 0.88901 0.88611 0.74983 0.75711 0.84275 0.84002 0.82451 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.00 13.05 21.66 0.28 -47.71 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 3 Si 1.00 40.87 29.55 68.60 2.03 42.90 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 7 C -0.33 -17.81 9.68 84.04 0.81 -16.99 16 8 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.56 -27.17 5.29 -306.97 -1.62 -28.79 16 10 C 0.44 18.92 7.85 87.66 0.69 19.61 16 11 O -0.62 -29.98 15.24 -3.07 -0.05 -30.02 16 12 C 0.12 4.22 6.15 85.63 0.53 4.75 16 13 N -0.70 -20.82 5.52 -470.24 -2.59 -23.41 16 14 C 0.59 17.35 7.67 86.62 0.66 18.02 16 15 O -0.57 -19.24 12.48 -4.11 -0.05 -19.29 16 16 C -0.31 -7.49 6.26 -18.78 -0.12 -7.60 16 17 C 0.14 2.20 11.50 84.27 0.97 3.17 16 18 N -0.44 -6.12 7.20 -56.43 -0.41 -6.52 16 19 H 0.46 2.59 8.96 -213.54 -1.91 0.68 16 20 N -0.30 -6.29 12.63 -44.53 -0.56 -6.85 16 21 C 0.16 3.94 6.94 44.07 0.31 4.25 16 22 C -0.04 -1.01 5.73 -20.05 -0.11 -1.13 16 23 C -0.05 -1.34 7.76 22.49 0.17 -1.17 16 24 C -0.13 -2.96 9.81 22.26 0.22 -2.74 16 25 C -0.03 -0.59 6.32 22.37 0.14 -0.45 16 26 Cl -0.07 -1.30 28.95 -2.72 -0.08 -1.38 16 27 C -0.12 -2.28 9.81 22.26 0.22 -2.06 16 28 C -0.08 -1.59 9.76 22.49 0.22 -1.37 16 29 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.40 18.64 7.90 -92.71 -0.73 17.90 16 31 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.41 11.33 6.39 -92.71 -0.59 10.74 16 34 H 0.23 1.91 7.48 -2.91 -0.02 1.89 16 35 H 0.14 4.07 5.69 -2.91 -0.02 4.05 16 36 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 37 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -68.78 354.34 0.07 -68.71 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -2.06 Total: 36.25 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 5.18 Total: 16.12 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -4.90 Total: -113.29 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -0.10 Total: -49.31 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -68.78 0.07 -68.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344179036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.654 kcal (2) G-P(sol) polarization free energy of solvation -68.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds