Wall clock time and date at job start Wed Apr 1 2020 05:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.40584 * 127.39284 * 2 1 4 4 N 1.28902 * 106.85704 * 180.02562 * 3 2 1 5 5 N 1.28417 * 110.39333 * 0.02562 * 4 3 2 6 6 C 1.31623 * 110.49583 * 359.97438 * 5 4 3 7 7 C 1.48021 * 126.47654 * 180.02562 * 6 5 4 8 8 C 1.39503 * 120.13233 * 198.97920 * 7 6 5 9 9 C 1.37963 * 119.85823 * 179.97438 * 8 7 6 10 10 C 1.38365 * 120.13734 * 359.97438 * 9 8 7 11 11 C 1.38319 * 120.27474 * 359.97438 * 10 9 8 12 12 S 1.76198 * 119.93443 * 180.02562 * 11 10 9 13 13 O 1.42097 * 106.40746 * 203.54172 * 12 11 10 14 14 O 1.42105 * 106.40093 * 336.46305 * 12 11 10 15 15 N 1.65603 * 107.21682 * 90.00065 * 12 11 10 16 16 C 1.36930 * 120.00080 * 90.00083 * 15 12 11 17 17 H 1.07997 * 120.00001 * 5.55274 * 16 15 12 18 18 C 1.38814 * 120.00061 * 185.54716 * 16 15 12 19 19 N 1.31615 * 119.99987 * 26.83698 * 18 16 15 20 20 Si 1.86796 * 120.00312 * 206.83056 * 18 16 15 21 21 H 1.48497 * 109.47044 * 94.99294 * 20 18 16 22 22 H 1.48495 * 109.47729 * 214.99852 * 20 18 16 23 23 H 1.48506 * 109.46919 * 334.99751 * 20 18 16 24 24 C 1.46503 * 119.99851 * 270.00227 * 15 12 11 25 25 C 1.47200 * 109.47078 * 93.29842 * 24 15 12 26 26 N 7.47051 * 96.56923 * 205.54754 * 2 1 3 27 27 C 1.38009 * 120.13303 * 359.76967 * 11 10 9 28 28 H 1.09003 * 109.46560 * 96.56882 * 1 2 3 29 29 H 1.09005 * 109.46913 * 216.56567 * 1 2 3 30 30 H 1.08992 * 109.47296 * 336.56857 * 1 2 3 31 31 H 1.07997 * 120.07604 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.93250 * 179.97438 * 9 8 7 33 33 H 1.08005 * 119.86366 * 180.02562 * 10 9 8 34 34 H 0.97000 * 120.00168 * 179.97438 * 19 18 16 35 35 H 1.08999 * 109.47131 * 213.29700 * 24 15 12 36 36 H 1.09001 * 109.47564 * 333.29411 * 24 15 12 37 37 H 1.08000 * 120.06949 * 180.27816 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3188 1.1169 0.0000 4 7 3.5259 0.6647 -0.0006 5 7 3.5227 -0.6194 -0.0014 6 6 2.2887 -1.0772 -0.0010 7 6 1.8776 -2.4992 -0.0011 8 6 0.5869 -2.8550 -0.3930 9 6 0.2099 -4.1821 -0.3915 10 6 1.1092 -5.1593 -0.0030 11 6 2.3907 -4.8129 0.3856 12 16 3.5288 -6.0647 0.8780 13 8 4.4899 -5.4288 1.7093 14 8 2.7473 -7.1735 1.3012 15 7 4.3374 -6.5543 -0.4817 16 6 5.4985 -5.9289 -0.8503 17 1 5.9347 -5.1780 -0.2082 18 6 6.1149 -6.2601 -2.0491 19 7 5.3996 -6.7295 -3.0492 20 14 7.9596 -6.0395 -2.2431 21 1 8.6456 -7.3223 -1.9447 22 1 8.2652 -5.6272 -3.6366 23 1 8.4347 -4.9936 -1.3020 24 6 3.8105 -7.6565 -1.2903 25 6 2.9685 -7.1147 -2.3692 26 7 2.3197 -6.6959 -3.2006 27 6 2.7814 -3.4893 0.3833 28 1 -0.3632 -0.1176 -1.0210 29 1 -0.3633 -0.8254 0.6123 30 1 -0.3633 0.9428 0.4086 31 1 -0.1158 -2.0933 -0.6969 32 1 -0.7891 -4.4589 -0.6943 33 1 0.8095 -6.1970 -0.0039 34 1 5.8302 -6.9606 -3.8871 35 1 4.6386 -8.2179 -1.7229 36 1 3.2140 -8.3165 -0.6604 37 1 3.7836 -3.2204 0.6826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351673919.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:16 Heat of formation + Delta-G solvation = 126.691876 kcal Electronic energy + Delta-G solvation = -28285.562424 eV Core-core repulsion = 24194.329843 eV Total energy + Delta-G solvation = -4091.232580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.95954 -39.02470 -36.88294 -36.09318 -35.41060 -34.68508 -34.60995 -33.05300 -31.91941 -31.05639 -30.23659 -28.48189 -27.66512 -24.27438 -24.02819 -23.54339 -22.42528 -21.34384 -18.84458 -18.36792 -17.75247 -17.06053 -16.87307 -16.73790 -16.35259 -15.87291 -15.37583 -14.96013 -14.79221 -14.44032 -14.02892 -13.96634 -13.75760 -13.56750 -13.20397 -12.91836 -12.89355 -12.50027 -12.33272 -11.96471 -11.73870 -11.63752 -11.56944 -11.47166 -11.17043 -10.98039 -10.93756 -10.87676 -10.78410 -10.63989 -10.52381 -10.40316 -10.25917 -10.11511 -9.77252 -9.14681 -8.70998 -8.62765 -6.95114 -4.21014 0.41656 1.07697 1.44758 1.50137 1.71945 2.43726 3.01173 3.09168 3.15175 3.47109 3.66867 3.79107 3.85874 3.98974 4.03438 4.35133 4.44307 4.59594 4.62912 4.69867 4.82384 4.93725 4.99156 5.17265 5.22372 5.27090 5.28359 5.48760 5.64025 5.74428 5.93810 6.02165 6.02630 6.23260 6.27884 6.35191 6.44692 6.74620 6.88774 7.02049 7.89903 8.27121 8.46608 8.69932 8.71363 10.03458 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.004481 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.187040 B = 6246.544902 C = 7222.707574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.383 5.383 3 N -0.094 5.094 4 N -0.036 5.036 5 N -0.318 5.318 6 C 0.305 3.695 7 C -0.074 4.074 8 C -0.073 4.073 9 C -0.141 4.141 10 C -0.002 4.002 11 C -0.659 4.659 12 S 2.514 3.486 13 O -0.971 6.971 14 O -0.991 6.991 15 N -0.788 5.788 16 C -0.233 4.233 17 H 0.134 0.866 18 C 0.031 3.969 19 N -0.826 5.826 20 Si 0.939 3.061 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.258 1.258 24 C 0.219 3.781 25 C 0.239 3.761 26 N -0.473 5.473 27 C 0.035 3.965 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.285 0.715 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.875 2.938 2.703 9.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.180 5.180 3 N -0.079 5.079 4 N -0.032 5.032 5 N -0.170 5.170 6 C 0.030 3.970 7 C -0.078 4.078 8 C -0.093 4.093 9 C -0.159 4.159 10 C -0.022 4.022 11 C -0.735 4.735 12 S 2.612 3.388 13 O -0.961 6.961 14 O -0.981 6.981 15 N -0.610 5.610 16 C -0.382 4.382 17 H 0.151 0.849 18 C -0.182 4.182 19 N -0.465 5.465 20 Si 0.763 3.237 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.182 1.182 24 C 0.089 3.911 25 C -0.080 4.080 26 N -0.153 5.153 27 C 0.014 3.986 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.096 0.904 35 H 0.152 0.848 36 H 0.123 0.877 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.046 4.364 2.364 10.318 hybrid contribution -0.471 0.304 -0.750 0.936 sum -9.516 4.668 1.614 10.722 Atomic orbital electron populations 1.22399 0.72708 1.06188 1.04663 1.51628 1.09609 1.04558 1.52227 1.82459 0.95393 1.07256 1.22798 1.77974 1.12498 1.03121 1.09573 1.74874 1.17221 1.02600 1.22327 1.23626 0.86540 0.90882 0.95937 1.17563 0.95931 0.85722 1.08585 1.21396 0.94100 0.97332 0.96522 1.21120 1.00486 0.92345 1.01980 1.21125 0.91390 1.00102 0.89603 1.32776 1.13039 1.14897 1.12778 1.12718 0.72482 0.73562 0.80004 1.93390 1.58746 1.76156 1.67781 1.93356 1.70895 1.51055 1.82797 1.55900 1.24807 1.34645 1.45647 1.20451 0.90371 1.22798 1.04597 0.84902 1.25682 1.02174 0.96673 0.93677 1.69974 1.36598 1.37106 1.02796 0.85667 0.79940 0.79769 0.78354 1.19339 1.20576 1.18154 1.19147 0.96215 0.89068 0.86632 1.29502 0.90813 0.93564 0.94142 1.80826 1.15145 1.08307 1.11001 1.20975 0.98735 0.90137 0.88781 0.88927 0.87948 0.87680 0.85487 0.84977 0.84493 0.90427 0.84766 0.87748 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 9.73 59.85 0.58 1.18 16 2 N -0.38 -5.14 4.10 -65.55 -0.27 -5.41 16 3 N -0.09 -1.48 13.93 60.35 0.84 -0.64 16 4 N -0.04 -0.66 13.37 60.35 0.81 0.14 16 5 N -0.32 -6.02 11.99 32.32 0.39 -5.63 16 6 C 0.30 4.97 7.77 -155.23 -1.21 3.77 16 7 C -0.07 -1.18 5.87 -104.96 -0.62 -1.80 16 8 C -0.07 -0.95 8.72 -39.21 -0.34 -1.29 16 9 C -0.14 -1.90 10.03 -39.64 -0.40 -2.30 16 10 C 0.00 -0.04 9.52 -39.50 -0.38 -0.41 16 11 C -0.66 -12.35 5.97 -39.64 -0.24 -12.59 16 12 S 2.51 51.53 5.65 -107.50 -0.61 50.92 16 13 O -0.97 -22.21 16.06 -57.17 -0.92 -23.13 16 14 O -0.99 -20.75 15.84 -57.17 -0.91 -21.65 16 15 N -0.79 -16.15 2.88 -62.77 -0.18 -16.33 16 16 C -0.23 -5.02 9.46 -15.06 -0.14 -5.16 16 17 H 0.13 2.88 7.24 -52.49 -0.38 2.50 16 18 C 0.03 0.66 4.90 -17.43 -0.09 0.57 16 19 N -0.83 -17.80 9.05 55.49 0.50 -17.30 16 20 Si 0.94 17.00 29.63 -169.99 -5.04 11.96 16 21 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 22 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 24 C 0.22 4.06 5.45 -6.83 -0.04 4.02 16 25 C 0.24 4.88 13.39 -20.80 -0.28 4.60 16 26 N -0.47 -10.38 18.53 42.10 0.78 -9.60 16 27 C 0.03 0.65 9.17 -39.21 -0.36 0.29 16 28 H 0.09 0.50 7.71 -51.93 -0.40 0.10 16 29 H 0.10 0.59 6.60 -51.93 -0.34 0.25 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.13 1.13 4.97 -52.49 -0.26 0.87 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.14 2.11 7.61 -52.48 -0.40 1.72 16 34 H 0.28 5.88 8.31 -40.82 -0.34 5.54 16 35 H 0.13 2.42 6.39 -51.93 -0.33 2.09 16 36 H 0.10 1.66 6.95 -51.93 -0.36 1.30 16 37 H 0.15 2.92 7.53 -52.49 -0.40 2.52 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -30.38 341.85 -5.80 -36.17 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -2.85 Total: 4.48 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.50 Total: -9.11 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 2.87 Total: -54.78 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -1.82 Total: -44.78 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.04 Total: 11.96 kcal Atomic # 16 Polarization: 51.53 SS G_CDS: -0.61 Total: 50.92 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.38 -5.80 -36.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351673919.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.863 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds