Wall clock time and date at job start Wed Apr 1 2020 05:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.40584 * 127.39284 * 2 1 4 4 N 1.28902 * 106.85704 * 180.02562 * 3 2 1 5 5 N 1.28417 * 110.39333 * 0.02562 * 4 3 2 6 6 C 1.31623 * 110.49583 * 359.97438 * 5 4 3 7 7 C 1.48021 * 126.47654 * 180.02562 * 6 5 4 8 8 C 1.39503 * 120.13233 * 198.97920 * 7 6 5 9 9 C 1.37963 * 119.85823 * 179.97438 * 8 7 6 10 10 C 1.38365 * 120.13734 * 359.97438 * 9 8 7 11 11 C 1.38319 * 120.27474 * 359.97438 * 10 9 8 12 12 S 1.76198 * 119.93443 * 180.02562 * 11 10 9 13 13 O 1.42097 * 106.40746 * 203.54172 * 12 11 10 14 14 O 1.42105 * 106.40093 * 336.46305 * 12 11 10 15 15 N 1.65603 * 107.21682 * 90.00065 * 12 11 10 16 16 C 1.36930 * 120.00080 * 90.00083 * 15 12 11 17 17 H 1.07997 * 120.00001 * 5.55274 * 16 15 12 18 18 C 1.38814 * 120.00061 * 185.54716 * 16 15 12 19 19 N 1.31615 * 119.99987 * 26.83698 * 18 16 15 20 20 Si 1.86796 * 120.00312 * 206.83056 * 18 16 15 21 21 H 1.48497 * 109.47044 * 94.99294 * 20 18 16 22 22 H 1.48495 * 109.47729 * 214.99852 * 20 18 16 23 23 H 1.48506 * 109.46919 * 334.99751 * 20 18 16 24 24 C 1.46503 * 119.99851 * 270.00227 * 15 12 11 25 25 C 1.47200 * 109.47078 * 93.29842 * 24 15 12 26 26 N 7.47051 * 96.56923 * 205.54754 * 2 1 3 27 27 C 1.38009 * 120.13303 * 359.76967 * 11 10 9 28 28 H 1.09003 * 109.46560 * 96.56882 * 1 2 3 29 29 H 1.09005 * 109.46913 * 216.56567 * 1 2 3 30 30 H 1.08992 * 109.47296 * 336.56857 * 1 2 3 31 31 H 1.07997 * 120.07604 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.93250 * 179.97438 * 9 8 7 33 33 H 1.08005 * 119.86366 * 180.02562 * 10 9 8 34 34 H 0.97000 * 120.00168 * 179.97438 * 19 18 16 35 35 H 1.08999 * 109.47131 * 213.29700 * 24 15 12 36 36 H 1.09001 * 109.47564 * 333.29411 * 24 15 12 37 37 H 1.08000 * 120.06949 * 180.27816 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3188 1.1169 0.0000 4 7 3.5259 0.6647 -0.0006 5 7 3.5227 -0.6194 -0.0014 6 6 2.2887 -1.0772 -0.0010 7 6 1.8776 -2.4992 -0.0011 8 6 0.5869 -2.8550 -0.3930 9 6 0.2099 -4.1821 -0.3915 10 6 1.1092 -5.1593 -0.0030 11 6 2.3907 -4.8129 0.3856 12 16 3.5288 -6.0647 0.8780 13 8 4.4899 -5.4288 1.7093 14 8 2.7473 -7.1735 1.3012 15 7 4.3374 -6.5543 -0.4817 16 6 5.4985 -5.9289 -0.8503 17 1 5.9347 -5.1780 -0.2082 18 6 6.1149 -6.2601 -2.0491 19 7 5.3996 -6.7295 -3.0492 20 14 7.9596 -6.0395 -2.2431 21 1 8.6456 -7.3223 -1.9447 22 1 8.2652 -5.6272 -3.6366 23 1 8.4347 -4.9936 -1.3020 24 6 3.8105 -7.6565 -1.2903 25 6 2.9685 -7.1147 -2.3692 26 7 2.3197 -6.6959 -3.2006 27 6 2.7814 -3.4893 0.3833 28 1 -0.3632 -0.1176 -1.0210 29 1 -0.3633 -0.8254 0.6123 30 1 -0.3633 0.9428 0.4086 31 1 -0.1158 -2.0933 -0.6969 32 1 -0.7891 -4.4589 -0.6943 33 1 0.8095 -6.1970 -0.0039 34 1 5.8302 -6.9606 -3.8871 35 1 4.6386 -8.2179 -1.7229 36 1 3.2140 -8.3165 -0.6604 37 1 3.7836 -3.2204 0.6826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351673919.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:15 Heat of formation + Delta-G solvation = 105.553556 kcal Electronic energy + Delta-G solvation = -28286.479050 eV Core-core repulsion = 24194.329843 eV Total energy + Delta-G solvation = -4092.149207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.18518 -40.27149 -38.45141 -37.86783 -36.49628 -36.44028 -36.26405 -34.28987 -33.48363 -32.32359 -31.48230 -29.35412 -29.20479 -25.87875 -25.25777 -24.73678 -23.68570 -22.57028 -20.43142 -19.88348 -19.20307 -18.47090 -18.16041 -17.90624 -17.83623 -17.12334 -16.82807 -16.33726 -16.31508 -15.91540 -15.27648 -14.93892 -14.89347 -14.77831 -14.72991 -14.24520 -14.07314 -13.94330 -13.61685 -13.49589 -13.25592 -13.19402 -12.91085 -12.84112 -12.77105 -12.61192 -12.58163 -12.17012 -12.13290 -12.07215 -11.97813 -11.81184 -11.66362 -11.59238 -11.28950 -10.43079 -10.18891 -9.96489 -8.49425 -5.86789 -0.78244 -0.33765 -0.05402 0.25368 0.71871 1.15712 1.53517 1.59297 1.68531 1.93559 2.32687 2.35828 2.41981 2.61451 2.75951 2.86696 3.04506 3.17257 3.52636 3.64640 3.72066 3.79796 3.84368 3.98887 4.14726 4.17988 4.35532 4.37006 4.46564 4.48922 4.54928 4.74166 4.87677 4.92033 5.03759 5.10216 5.13687 5.24411 5.45907 5.66314 6.30859 6.69870 7.11317 7.13009 7.21712 8.50289 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.004481 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.187040 B = 6246.544902 C = 7222.707574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.362 5.362 3 N -0.091 5.091 4 N -0.065 5.065 5 N -0.358 5.358 6 C 0.294 3.706 7 C -0.077 4.077 8 C -0.050 4.050 9 C -0.129 4.129 10 C -0.015 4.015 11 C -0.682 4.682 12 S 2.562 3.438 13 O -0.999 6.999 14 O -0.993 6.993 15 N -0.806 5.806 16 C -0.275 4.275 17 H 0.117 0.883 18 C 0.012 3.988 19 N -0.855 5.855 20 Si 0.983 3.017 21 H -0.258 1.258 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.219 3.781 25 C 0.252 3.748 26 N -0.501 5.501 27 C 0.011 3.989 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.147 0.853 34 H 0.283 0.717 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 3.464 2.723 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.159 5.159 3 N -0.078 5.078 4 N -0.060 5.060 5 N -0.211 5.211 6 C 0.019 3.981 7 C -0.082 4.082 8 C -0.070 4.070 9 C -0.148 4.148 10 C -0.035 4.035 11 C -0.763 4.763 12 S 2.661 3.339 13 O -0.989 6.989 14 O -0.983 6.983 15 N -0.630 5.630 16 C -0.420 4.420 17 H 0.135 0.865 18 C -0.198 4.198 19 N -0.495 5.495 20 Si 0.807 3.193 21 H -0.182 1.182 22 H -0.212 1.212 23 H -0.192 1.192 24 C 0.090 3.910 25 C -0.067 4.067 26 N -0.182 5.182 27 C -0.010 4.010 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.196 0.804 32 H 0.197 0.803 33 H 0.164 0.836 34 H 0.093 0.907 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.742 4.856 2.350 13.837 hybrid contribution 0.312 0.297 -0.550 0.699 sum -12.430 5.153 1.800 13.576 Atomic orbital electron populations 1.23122 0.68863 1.08702 1.07319 1.51951 1.11356 1.02791 1.49850 1.82326 0.95276 1.08193 1.21956 1.77958 1.13672 1.03059 1.11318 1.74766 1.19575 1.03222 1.23537 1.23532 0.86457 0.91500 0.96628 1.17636 0.96886 0.84962 1.08703 1.21976 0.93102 0.98577 0.93315 1.21652 1.01751 0.91615 0.99732 1.21424 0.90841 1.01681 0.89516 1.32127 1.14159 1.14079 1.15914 1.09646 0.72335 0.73466 0.78438 1.93380 1.60331 1.76978 1.68177 1.93367 1.70956 1.51368 1.82582 1.55178 1.26011 1.36351 1.45447 1.20183 0.92590 1.23880 1.05315 0.86550 1.26030 1.04109 0.96416 0.93202 1.70008 1.37039 1.39526 1.02902 0.85033 0.77349 0.79629 0.77338 1.18234 1.21212 1.19233 1.19326 0.96503 0.88595 0.86623 1.29799 0.90175 0.92810 0.93889 1.80801 1.16412 1.09147 1.11809 1.20844 0.98636 0.91030 0.90538 0.85869 0.85647 0.85264 0.80404 0.80278 0.83553 0.90670 0.84358 0.85011 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 9.73 127.77 1.24 1.78 16 2 N -0.36 -8.65 4.10 -361.31 -1.48 -10.13 16 3 N -0.09 -2.77 13.93 37.02 0.52 -2.25 16 4 N -0.07 -2.39 13.37 37.02 0.50 -1.89 16 5 N -0.36 -13.78 11.99 -51.65 -0.62 -14.40 16 6 C 0.29 9.20 7.77 136.80 1.06 10.26 16 7 C -0.08 -2.33 5.87 -20.08 -0.12 -2.45 16 8 C -0.05 -1.05 8.72 22.51 0.20 -0.85 16 9 C -0.13 -2.83 10.03 22.23 0.22 -2.61 16 10 C -0.01 -0.44 9.52 22.32 0.21 -0.23 16 11 C -0.68 -25.09 5.97 22.23 0.13 -24.96 16 12 S 2.56 105.63 5.65 -56.49 -0.32 105.31 16 13 O -1.00 -47.19 16.06 -128.00 -2.06 -49.25 16 14 O -0.99 -40.42 15.84 -128.00 -2.03 -42.44 16 15 N -0.81 -33.71 2.88 -352.51 -1.02 -34.72 16 16 C -0.28 -12.44 9.46 84.04 0.80 -11.64 16 17 H 0.12 5.46 7.24 -2.91 -0.02 5.44 16 18 C 0.01 0.53 4.90 84.86 0.42 0.94 16 19 N -0.86 -37.96 9.05 21.65 0.20 -37.76 16 20 Si 0.98 36.28 29.63 68.60 2.03 38.31 16 21 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 22 H -0.29 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 24 C 0.22 8.10 5.45 84.57 0.46 8.56 16 25 C 0.25 10.21 13.39 89.46 1.20 11.40 16 26 N -0.50 -21.70 18.53 19.99 0.37 -21.33 16 27 C 0.01 0.42 9.17 22.51 0.21 0.62 16 28 H 0.12 0.51 7.71 -2.39 -0.02 0.49 16 29 H 0.13 0.65 6.60 -2.38 -0.02 0.63 16 30 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.18 1.87 4.97 -2.91 -0.01 1.86 16 32 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.15 4.07 7.61 -2.91 -0.02 4.05 16 34 H 0.28 12.04 8.31 -92.71 -0.77 11.27 16 35 H 0.14 5.05 6.39 -2.39 -0.02 5.04 16 36 H 0.13 4.05 6.95 -2.39 -0.02 4.03 16 37 H 0.13 5.21 7.53 -2.91 -0.02 5.19 16 Total: -1.00 -69.77 341.85 3.28 -66.49 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.16 Total: 13.25 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 6.03 Total: -9.17 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -1.54 Total: -122.50 kcal Atomic # 8 Polarization: -87.61 SS G_CDS: -4.08 Total: -91.69 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Atomic # 16 Polarization: 105.63 SS G_CDS: -0.32 Total: 105.31 kcal Total: -69.77 3.28 -66.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351673919.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.046 kcal (2) G-P(sol) polarization free energy of solvation -69.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds