Wall clock time and date at job start Wed Apr 1 2020 05:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99873 * 2 1 4 4 H 1.48498 * 109.46855 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47200 * 299.99707 * 3 2 1 6 6 H 1.48492 * 109.47173 * 59.99600 * 3 2 1 7 7 C 1.38796 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00124 * 180.02562 * 7 2 1 9 9 S 1.76206 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99700 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46790 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00202 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00009 * 179.72351 * 11 10 9 14 14 C 1.39928 * 120.00069 * 174.99734 * 13 11 10 15 15 C 1.38871 * 120.07229 * 326.56103 * 14 13 11 16 16 C 1.38119 * 119.92733 * 179.76313 * 15 14 13 17 17 C 1.38274 * 120.06971 * 0.48116 * 16 15 14 18 18 C 1.50698 * 119.92981 * 179.74281 * 17 16 15 19 19 C 1.53002 * 109.47530 * 270.02729 * 18 17 16 20 20 H 1.09000 * 110.53573 * 303.59902 * 19 18 17 21 21 C 1.54226 * 110.60677 * 180.58886 * 19 18 17 22 22 C 1.51317 * 103.55301 * 241.48151 * 21 19 18 23 23 O 1.21227 * 125.39200 * 179.97438 * 22 21 19 24 24 N 1.33876 * 109.20512 * 359.97438 * 22 21 19 25 25 C 1.33878 * 114.47797 * 0.02562 * 24 22 21 26 26 O 1.21219 * 125.39483 * 179.97438 * 25 24 22 27 27 C 1.38283 * 120.14646 * 359.77243 * 17 16 15 28 28 C 1.38117 * 120.06810 * 359.97438 * 27 17 16 29 29 H 0.96998 * 120.00255 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47755 * 60.00533 * 10 9 7 31 31 H 1.08995 * 109.47166 * 299.99719 * 10 9 7 32 32 H 0.96998 * 120.00167 * 355.00345 * 13 11 10 33 33 H 1.07997 * 120.03248 * 359.96751 * 15 14 13 34 34 H 1.07996 * 119.96384 * 180.25095 * 16 15 14 35 35 H 1.09003 * 109.46754 * 30.02573 * 18 17 16 36 36 H 1.09006 * 109.47199 * 150.02000 * 18 17 16 37 37 H 1.09005 * 110.60610 * 359.97438 * 21 19 18 38 38 H 1.09000 * 110.60693 * 122.96368 * 21 19 18 39 39 H 0.96999 * 122.75529 * 179.97438 * 24 22 21 40 40 H 1.07996 * 119.97389 * 179.97438 * 27 17 16 41 41 H 1.07995 * 120.03832 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0036 12 8 0.7911 -5.5023 0.0038 13 7 2.8441 -6.3431 -0.0012 14 6 2.3575 -7.6507 0.1050 15 6 1.2253 -7.9122 0.8655 16 6 0.7447 -9.2033 0.9643 17 6 1.3953 -10.2363 0.3152 18 6 0.8715 -11.6447 0.4299 19 6 1.5186 -12.3332 1.6333 20 1 2.6050 -12.3108 1.5480 21 6 1.0111 -13.7834 1.7666 22 6 0.3311 -13.7983 3.1182 23 8 -0.2123 -14.7587 3.6203 24 7 0.4246 -12.5829 3.6717 25 6 1.0724 -11.6812 2.9237 26 8 1.2700 -10.5255 3.2314 27 6 2.5259 -9.9801 -0.4386 28 6 3.0086 -8.6905 -0.5457 29 1 -0.4850 0.8400 -0.0004 30 1 3.1245 -3.7306 0.8928 31 1 3.1244 -3.7321 -0.8872 32 1 3.7981 -6.1854 -0.0783 33 1 0.7193 -7.1063 1.3764 34 1 -0.1381 -9.4067 1.5523 35 1 -0.2101 -11.6203 0.5635 36 1 1.1129 -12.1973 -0.4782 37 1 0.2972 -14.0143 0.9758 38 1 1.8452 -14.4849 1.7490 39 1 0.0529 -12.3729 4.5427 40 1 3.0321 -10.7891 -0.9442 41 1 3.8919 -8.4910 -1.1342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352386061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:02 Heat of formation + Delta-G solvation = -78.368988 kcal Electronic energy + Delta-G solvation = -26363.678504 eV Core-core repulsion = 22334.801409 eV Total energy + Delta-G solvation = -4028.877094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.28909 -40.30034 -39.13131 -38.36803 -36.38885 -35.23129 -33.74746 -32.46338 -30.97367 -30.90833 -29.20267 -27.00075 -25.54319 -25.01862 -23.06753 -22.33575 -21.93197 -20.86148 -20.15808 -18.32151 -18.10590 -17.45329 -17.25803 -16.61255 -16.45707 -15.83202 -15.53774 -15.26373 -14.83661 -14.73602 -14.59027 -14.43344 -14.33337 -14.01771 -13.85154 -13.51137 -13.35227 -13.25578 -12.78416 -12.63933 -12.56931 -12.02540 -11.77184 -11.70292 -11.15698 -11.09461 -11.05515 -10.97715 -10.79630 -10.75032 -10.46504 -10.07942 -9.85352 -9.49938 -9.10658 -8.83015 -8.29456 -7.95564 -6.54971 -6.25311 -3.96560 1.03202 1.26302 1.47270 2.26422 2.32405 2.92017 2.92625 3.19654 3.25657 3.30089 3.55231 3.61548 3.66667 3.77370 3.86575 4.16386 4.29969 4.61807 4.67682 4.84278 4.91395 4.97446 5.02546 5.06200 5.10200 5.16068 5.36294 5.42634 5.51805 5.53935 5.69332 5.73070 5.79550 6.03793 6.05937 6.15725 6.27356 6.41849 6.55650 6.63954 6.82491 7.10546 7.40219 7.52511 7.56876 8.31907 8.41701 9.20244 10.82179 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.001767 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.418440 B =15841.204649 C =16348.347586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.495 6.495 13 N -0.682 5.682 14 C 0.163 3.837 15 C -0.119 4.119 16 C -0.063 4.063 17 C -0.123 4.123 18 C -0.058 4.058 19 C -0.120 4.120 20 H 0.127 0.873 21 C -0.156 4.156 22 C 0.530 3.470 23 O -0.488 6.488 24 N -0.684 5.684 25 C 0.524 3.476 26 O -0.455 6.455 27 C -0.092 4.092 28 C -0.156 4.156 29 H 0.268 0.732 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.409 0.591 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.415 0.585 40 H 0.122 0.878 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.152 -29.307 1.221 30.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.367 6.367 13 N -0.328 5.328 14 C 0.068 3.932 15 C -0.140 4.140 16 C -0.082 4.082 17 C -0.124 4.124 18 C -0.095 4.095 19 C -0.142 4.142 20 H 0.145 0.855 21 C -0.196 4.196 22 C 0.318 3.682 23 O -0.360 6.360 24 N -0.350 5.350 25 C 0.310 3.690 26 O -0.323 6.323 27 C -0.111 4.111 28 C -0.176 4.176 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.244 0.756 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.254 0.746 40 H 0.140 0.860 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.885 -29.342 1.503 29.784 hybrid contribution 2.297 1.576 0.481 2.827 sum 7.183 -27.766 1.984 28.748 Atomic orbital electron populations 1.70024 1.05961 1.27431 1.46809 1.25002 0.95043 0.99084 0.94469 0.86098 0.79570 0.81793 0.77929 1.19597 1.20538 1.20537 1.22902 0.94968 0.91520 1.59031 0.90777 1.85423 1.04547 0.96372 1.96744 1.23548 1.06930 0.94693 1.05299 1.20523 0.86532 0.86290 0.74807 1.90721 1.15210 1.85262 1.45533 1.43720 1.10890 1.04010 1.74219 1.17832 0.95690 0.84000 0.95630 1.21170 0.96867 0.97479 0.98435 1.20755 0.98910 0.91723 0.96765 1.19499 0.97342 0.94362 1.01169 1.20433 1.00088 0.92881 0.96110 1.22152 1.04307 0.93638 0.94071 0.85507 1.22623 1.03267 0.97772 0.95900 1.20809 0.78038 0.81454 0.87904 1.90829 1.41718 1.35596 1.67853 1.44850 1.53667 1.13540 1.22928 1.20810 0.76513 0.85361 0.86294 1.90896 1.52201 1.15057 1.74157 1.20656 0.95713 0.95948 0.98772 1.20805 1.02392 0.92580 1.01852 0.92178 0.88763 0.88880 0.75554 0.84670 0.86559 0.90435 0.88903 0.85780 0.85910 0.74561 0.85971 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.53 9.83 7.59 -10.99 -0.08 9.75 16 12 O -0.50 -11.01 13.56 5.55 0.08 -10.93 16 13 N -0.68 -9.54 5.34 -9.86 -0.05 -9.60 16 14 C 0.16 2.27 6.28 -83.69 -0.53 1.74 16 15 C -0.12 -1.81 8.66 -39.39 -0.34 -2.15 16 16 C -0.06 -0.78 7.44 -39.61 -0.29 -1.07 16 17 C -0.12 -1.13 4.74 -104.59 -0.50 -1.63 16 18 C -0.06 -0.29 4.70 -27.88 -0.13 -0.42 16 19 C -0.12 -0.50 3.12 -90.83 -0.28 -0.78 16 20 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 21 C -0.16 -0.39 6.67 -26.94 -0.18 -0.57 16 22 C 0.53 3.20 8.55 -11.08 -0.09 3.10 16 23 O -0.49 -4.75 18.02 5.60 0.10 -4.65 16 24 N -0.68 -4.06 5.48 -11.40 -0.06 -4.13 16 25 C 0.52 3.82 7.67 -11.09 -0.09 3.73 16 26 O -0.45 -5.16 15.05 5.61 0.08 -5.07 16 27 C -0.09 -0.81 9.69 -39.61 -0.38 -1.20 16 28 C -0.16 -1.66 9.96 -39.39 -0.39 -2.06 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.41 4.24 8.82 -40.82 -0.36 3.88 16 33 H 0.14 2.40 6.43 -52.49 -0.34 2.06 16 34 H 0.12 1.38 7.68 -52.49 -0.40 0.98 16 35 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.09 0.26 8.08 -51.93 -0.42 -0.16 16 37 H 0.12 0.13 7.74 -51.93 -0.40 -0.27 16 38 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.41 2.15 8.96 -40.82 -0.37 1.79 16 40 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -37.99 368.92 -8.46 -46.44 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.79 Total: 2.34 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.87 Total: -7.20 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.62 Total: -38.98 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.26 Total: -20.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.99 -8.46 -46.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352386061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.926 kcal (2) G-P(sol) polarization free energy of solvation -37.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds