Wall clock time and date at job start Wed Apr 1 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48500 * 109.47259 * 269.99881 * 3 2 1 5 5 H 1.48502 * 109.47306 * 30.00033 * 3 2 1 6 6 H 1.48507 * 109.47187 * 149.99897 * 3 2 1 7 7 C 1.37875 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00571 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99550 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47036 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99974 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00086 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99877 * 179.97438 * 11 10 9 14 14 N 1.46499 * 109.46995 * 179.97438 * 13 11 10 15 15 S 1.65597 * 119.99926 * 165.27893 * 14 13 11 16 16 O 1.42096 * 106.40195 * 178.26439 * 15 14 13 17 17 O 1.42108 * 106.40105 * 311.18495 * 15 14 13 18 18 C 1.76199 * 107.22117 * 64.72196 * 15 14 13 19 19 C 1.39381 * 119.50656 * 269.72843 * 18 15 14 20 20 C 1.36094 * 120.98392 * 179.72579 * 19 18 15 21 21 C 1.40533 * 119.66022 * 0.56299 * 20 19 18 22 22 C 1.40537 * 121.28718 * 179.72196 * 21 20 19 23 23 C 1.36086 * 119.65642 * 180.02562 * 22 21 20 24 24 C 1.39374 * 120.98885 * 359.95286 * 23 22 21 25 25 C 1.36095 * 120.99028 * 0.02562 * 24 23 22 26 26 C 1.40549 * 119.65231 * 0.02562 * 25 24 23 27 27 C 1.36094 * 119.50415 * 89.99750 * 18 15 14 28 28 H 0.97005 * 119.99870 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47663 * 59.99263 * 9 7 2 30 30 H 1.09002 * 109.46981 * 299.98949 * 9 7 2 31 31 H 0.96996 * 119.99995 * 359.97438 * 10 9 7 32 32 H 1.09007 * 109.46980 * 59.99824 * 13 11 10 33 33 H 1.08995 * 109.47206 * 300.00007 * 13 11 10 34 34 H 0.97001 * 119.99790 * 344.99681 * 14 13 11 35 35 H 1.07995 * 119.50277 * 0.02562 * 19 18 15 36 36 H 1.08008 * 120.16922 * 180.28007 * 20 19 18 37 37 H 1.07996 * 120.16689 * 0.02562 * 22 21 20 38 38 H 1.08000 * 119.50604 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.50976 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.17576 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.17473 * 0.02562 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5614 -5.1050 0.0000 13 6 2.7331 -6.0288 -0.0006 14 7 2.0006 -7.2975 -0.0005 15 16 2.7876 -8.7080 -0.3654 16 8 1.8269 -9.7475 -0.2404 17 8 3.5168 -8.4630 -1.5603 18 6 3.9832 -8.9807 0.8998 19 6 5.2707 -8.4684 0.7496 20 6 6.2161 -8.6563 1.7104 21 6 5.8961 -9.3873 2.8672 22 6 6.8474 -9.6069 3.8782 23 6 6.5018 -10.3200 4.9845 24 6 5.2159 -10.8369 5.1324 25 6 4.2687 -10.6439 4.1744 26 6 4.5888 -9.9133 3.0172 27 6 3.6373 -9.6930 2.0066 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6242 -2.5567 0.8904 31 1 3.1567 -3.4354 0.0002 32 1 3.3598 -5.9714 0.8894 33 1 3.3596 -5.9706 -0.8905 34 1 1.0554 -7.3118 0.2174 35 1 5.5204 -7.9100 -0.1404 36 1 7.2085 -8.2497 1.5824 37 1 7.8474 -9.2118 3.7775 38 1 7.2349 -10.4877 5.7597 39 1 4.9674 -11.3990 6.0204 40 1 3.2762 -11.0499 4.3028 41 1 2.6371 -10.0880 2.1072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352668849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:07 Heat of formation + Delta-G solvation = -69.581291 kcal Electronic energy + Delta-G solvation = -26837.748851 eV Core-core repulsion = 22809.252820 eV Total energy + Delta-G solvation = -4028.496031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77015 -39.09037 -37.38909 -36.97288 -35.98682 -34.88306 -34.13951 -33.26014 -32.41888 -30.91932 -29.73158 -28.31608 -26.10648 -24.33440 -23.60177 -22.56378 -22.42904 -20.06414 -19.83263 -18.58817 -17.96386 -17.69466 -17.20916 -16.84400 -16.24075 -15.73360 -15.43871 -15.24547 -15.17223 -15.04706 -14.66215 -14.34180 -14.15493 -13.87096 -13.77012 -13.57548 -13.17809 -12.88994 -12.70310 -12.24354 -12.17103 -12.14207 -12.02915 -11.98205 -11.95029 -11.75352 -11.36606 -11.04182 -11.01391 -10.92800 -10.50908 -10.37711 -9.76932 -9.46640 -9.27515 -9.26057 -8.80557 -8.44243 -8.01707 -6.21606 -4.29037 -0.13778 0.23618 0.41825 1.52857 2.30850 2.86546 3.14381 3.21539 3.27802 3.29797 3.50093 3.67276 3.89510 4.03848 4.24229 4.31756 4.38307 4.42815 4.62892 4.67711 4.83576 4.86501 4.92057 4.99455 5.14789 5.26433 5.27968 5.32601 5.42692 5.45930 5.60296 5.70265 5.72521 5.80555 6.00344 6.06506 6.33083 6.48391 6.91418 7.21484 7.28328 7.43591 7.58446 7.90220 8.47666 8.67789 8.93159 9.37514 10.88501 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.002398 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.778741 B =11674.100001 C =12925.804085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.707 5.707 11 C 0.498 3.502 12 O -0.548 6.548 13 C 0.095 3.905 14 N -1.101 6.101 15 S 2.701 3.299 16 O -0.957 6.957 17 O -0.953 6.953 18 C -0.673 4.673 19 C -0.043 4.043 20 C -0.119 4.119 21 C -0.013 4.013 22 C -0.119 4.119 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.088 4.088 26 C -0.080 4.080 27 C 0.021 3.979 28 H 0.266 0.734 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.393 0.607 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.429 0.571 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.849 -21.809 8.731 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.355 5.355 11 C 0.280 3.720 12 O -0.426 6.426 13 C -0.036 4.036 14 N -0.865 5.865 15 S 2.789 3.211 16 O -0.947 6.947 17 O -0.943 6.943 18 C -0.759 4.759 19 C -0.062 4.062 20 C -0.138 4.138 21 C -0.013 4.013 22 C -0.137 4.137 23 C -0.114 4.114 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.081 4.081 27 C 0.001 3.999 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.226 0.774 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.268 0.732 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.843 -22.316 7.970 27.444 hybrid contribution 0.946 1.226 0.857 1.769 sum 14.789 -21.091 8.827 27.229 Atomic orbital electron populations 1.69969 1.06131 1.27409 1.48691 1.24954 0.94925 0.99510 0.94620 0.86400 0.79588 0.82553 0.78267 1.20416 1.21013 1.19725 1.21205 0.93307 0.90341 1.53486 0.91775 1.19170 0.88250 0.81778 0.97969 1.46429 1.11474 1.05849 1.71759 1.20184 0.89333 0.84420 0.78043 1.90659 1.16512 1.84425 1.51054 1.21154 0.94705 0.83665 1.04033 1.55194 1.22678 1.20070 1.88537 1.01742 0.73160 0.72251 0.73947 1.93599 1.60074 1.54115 1.86885 1.93593 1.73535 1.84885 1.42257 1.30705 1.13944 1.13287 1.17973 1.20515 0.90821 0.96009 0.98855 1.21103 1.00134 0.99356 0.93210 1.18291 0.92945 0.95418 0.94631 1.21116 0.99208 0.99660 0.93704 1.21005 0.96571 0.96292 0.97556 1.20924 0.93449 1.00474 0.99490 1.21172 1.00017 0.96815 0.92609 1.18185 0.93814 1.00408 0.95714 1.21007 0.99055 0.89977 0.89850 0.92377 0.95284 0.95320 0.77358 0.89085 0.87524 0.73173 0.83970 0.84560 0.85030 0.85538 0.85482 0.84862 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 13.29 55.43 0.74 -24.80 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.55 -14.27 9.28 -34.44 -0.32 -14.59 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.32 5.43 -5.19 -0.03 6.29 16 10 N -0.71 -13.76 5.55 -61.47 -0.34 -14.10 16 11 C 0.50 9.08 7.90 -10.98 -0.09 9.00 16 12 O -0.55 -12.16 15.73 5.56 0.09 -12.08 16 13 C 0.09 1.20 6.70 -5.19 -0.03 1.16 16 14 N -1.10 -13.82 5.93 -11.66 -0.07 -13.89 16 15 S 2.70 32.47 5.72 -107.50 -0.62 31.86 16 16 O -0.96 -13.54 17.21 -57.17 -0.98 -14.53 16 17 O -0.95 -13.54 16.71 -57.17 -0.96 -14.49 16 18 C -0.67 -7.03 5.91 -39.93 -0.24 -7.26 16 19 C -0.04 -0.41 9.42 -39.93 -0.38 -0.78 16 20 C -0.12 -1.02 9.77 -39.49 -0.39 -1.41 16 21 C -0.01 -0.12 5.74 -106.84 -0.61 -0.73 16 22 C -0.12 -0.86 9.77 -39.49 -0.39 -1.25 16 23 C -0.10 -0.61 9.95 -39.93 -0.40 -1.01 16 24 C -0.13 -0.82 9.95 -39.93 -0.40 -1.22 16 25 C -0.09 -0.68 9.77 -39.48 -0.39 -1.07 16 26 C -0.08 -0.77 5.74 -106.83 -0.61 -1.39 16 27 C 0.02 0.20 9.22 -39.48 -0.36 -0.16 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.39 6.32 8.32 -40.82 -0.34 5.98 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.11 1.15 7.76 -51.93 -0.40 0.75 16 34 H 0.43 5.68 7.70 -34.47 -0.27 5.42 16 35 H 0.14 1.14 7.56 -52.49 -0.40 0.74 16 36 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.15 1.23 7.54 -52.49 -0.40 0.84 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -36.06 370.49 -11.02 -47.08 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -4.72 Total: 6.81 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -4.72 Total: -12.78 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.33 Total: -52.79 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.85 Total: -41.10 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 32.47 SS G_CDS: -0.62 Total: 31.86 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.06 -11.02 -47.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352668849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.506 kcal (2) G-P(sol) polarization free energy of solvation -36.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds