Wall clock time and date at job start Wed Apr 1 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48500 * 109.47259 * 269.99881 * 3 2 1 5 5 H 1.48502 * 109.47306 * 30.00033 * 3 2 1 6 6 H 1.48507 * 109.47187 * 149.99897 * 3 2 1 7 7 C 1.37875 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00571 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99550 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47036 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99974 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00086 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99877 * 179.97438 * 11 10 9 14 14 N 1.46499 * 109.46995 * 179.97438 * 13 11 10 15 15 S 1.65597 * 119.99926 * 165.27893 * 14 13 11 16 16 O 1.42096 * 106.40195 * 178.26439 * 15 14 13 17 17 O 1.42108 * 106.40105 * 311.18495 * 15 14 13 18 18 C 1.76199 * 107.22117 * 64.72196 * 15 14 13 19 19 C 1.39381 * 119.50656 * 269.72843 * 18 15 14 20 20 C 1.36094 * 120.98392 * 179.72579 * 19 18 15 21 21 C 1.40533 * 119.66022 * 0.56299 * 20 19 18 22 22 C 1.40537 * 121.28718 * 179.72196 * 21 20 19 23 23 C 1.36086 * 119.65642 * 180.02562 * 22 21 20 24 24 C 1.39374 * 120.98885 * 359.95286 * 23 22 21 25 25 C 1.36095 * 120.99028 * 0.02562 * 24 23 22 26 26 C 1.40549 * 119.65231 * 0.02562 * 25 24 23 27 27 C 1.36094 * 119.50415 * 89.99750 * 18 15 14 28 28 H 0.97005 * 119.99870 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47663 * 59.99263 * 9 7 2 30 30 H 1.09002 * 109.46981 * 299.98949 * 9 7 2 31 31 H 0.96996 * 119.99995 * 359.97438 * 10 9 7 32 32 H 1.09007 * 109.46980 * 59.99824 * 13 11 10 33 33 H 1.08995 * 109.47206 * 300.00007 * 13 11 10 34 34 H 0.97001 * 119.99790 * 344.99681 * 14 13 11 35 35 H 1.07995 * 119.50277 * 0.02562 * 19 18 15 36 36 H 1.08008 * 120.16922 * 180.28007 * 20 19 18 37 37 H 1.07996 * 120.16689 * 0.02562 * 22 21 20 38 38 H 1.08000 * 119.50604 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.50976 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.17576 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.17473 * 0.02562 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5614 -5.1050 0.0000 13 6 2.7331 -6.0288 -0.0006 14 7 2.0006 -7.2975 -0.0005 15 16 2.7876 -8.7080 -0.3654 16 8 1.8269 -9.7475 -0.2404 17 8 3.5168 -8.4630 -1.5603 18 6 3.9832 -8.9807 0.8998 19 6 5.2707 -8.4684 0.7496 20 6 6.2161 -8.6563 1.7104 21 6 5.8961 -9.3873 2.8672 22 6 6.8474 -9.6069 3.8782 23 6 6.5018 -10.3200 4.9845 24 6 5.2159 -10.8369 5.1324 25 6 4.2687 -10.6439 4.1744 26 6 4.5888 -9.9133 3.0172 27 6 3.6373 -9.6930 2.0066 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6242 -2.5567 0.8904 31 1 3.1567 -3.4354 0.0002 32 1 3.3598 -5.9714 0.8894 33 1 3.3596 -5.9706 -0.8905 34 1 1.0554 -7.3118 0.2174 35 1 5.5204 -7.9100 -0.1404 36 1 7.2085 -8.2497 1.5824 37 1 7.8474 -9.2118 3.7775 38 1 7.2349 -10.4877 5.7597 39 1 4.9674 -11.3990 6.0204 40 1 3.2762 -11.0499 4.3028 41 1 2.6371 -10.0880 2.1072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352668849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:06 Heat of formation + Delta-G solvation = -96.912946 kcal Electronic energy + Delta-G solvation = -26838.934041 eV Core-core repulsion = 22809.252820 eV Total energy + Delta-G solvation = -4029.681221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35268 -40.64082 -38.43900 -37.56408 -37.03431 -36.36950 -35.61963 -34.36431 -33.84643 -31.52207 -30.30985 -30.02002 -27.63593 -24.96921 -24.47936 -24.19442 -23.00724 -21.60053 -20.79318 -19.59534 -19.12774 -18.36252 -18.27459 -17.91200 -17.47488 -17.08237 -16.80629 -16.56128 -16.29297 -15.98305 -15.69885 -15.23127 -14.98543 -14.81465 -14.64057 -14.43403 -14.37725 -14.17498 -13.96521 -13.59993 -13.36996 -13.31165 -13.24613 -13.17316 -12.89260 -12.70473 -12.63436 -12.55239 -12.21633 -11.91830 -11.76336 -11.47358 -11.11339 -10.98410 -10.79657 -10.64381 -9.88063 -9.85553 -9.01988 -8.27798 -6.43851 -0.85595 -0.62039 -0.20891 0.93046 1.45376 1.47244 1.58245 1.64703 1.66144 1.96925 2.33662 2.55390 2.63275 3.01811 3.07783 3.23196 3.56235 3.70439 3.82769 3.88412 4.05973 4.13550 4.23653 4.26641 4.33920 4.35964 4.41973 4.58108 4.70332 4.83391 4.92742 5.03465 5.13432 5.16575 5.23101 5.25892 5.46878 5.49060 5.51575 5.67911 5.75056 5.83026 5.87743 5.95213 6.66867 6.84652 7.24382 7.43099 8.84242 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.002398 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.778741 B =11674.100001 C =12925.804085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.554 4.554 8 H 0.087 0.913 9 C 0.264 3.736 10 N -0.701 5.701 11 C 0.495 3.505 12 O -0.592 6.592 13 C 0.104 3.896 14 N -1.107 6.107 15 S 2.720 3.280 16 O -0.983 6.983 17 O -0.976 6.976 18 C -0.674 4.674 19 C -0.062 4.062 20 C -0.116 4.116 21 C -0.032 4.032 22 C -0.126 4.126 23 C -0.097 4.097 24 C -0.124 4.124 25 C -0.106 4.106 26 C -0.100 4.100 27 C 0.009 3.991 28 H 0.268 0.732 29 H -0.011 1.011 30 H -0.009 1.009 31 H 0.413 0.587 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.426 0.574 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.513 -21.989 10.172 30.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.592 4.592 8 H 0.105 0.895 9 C 0.141 3.859 10 N -0.352 5.352 11 C 0.280 3.720 12 O -0.474 6.474 13 C -0.026 4.026 14 N -0.869 5.869 15 S 2.812 3.188 16 O -0.973 6.973 17 O -0.966 6.966 18 C -0.763 4.763 19 C -0.081 4.081 20 C -0.134 4.134 21 C -0.032 4.032 22 C -0.144 4.144 23 C -0.114 4.114 24 C -0.142 4.142 25 C -0.123 4.123 26 C -0.101 4.101 27 C -0.011 4.011 28 H 0.077 0.923 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.250 0.750 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.264 0.736 35 H 0.172 0.828 36 H 0.181 0.819 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 17.540 -22.520 9.384 30.048 hybrid contribution -0.160 1.141 0.533 1.269 sum 17.380 -21.379 9.917 29.282 Atomic orbital electron populations 1.70135 1.08279 1.28512 1.50098 1.26051 0.95742 1.03903 0.93974 0.85177 0.78576 0.77069 0.78513 1.19783 1.21220 1.17700 1.21632 0.94456 0.90449 1.52656 0.89483 1.18591 0.88709 0.84180 0.94377 1.46111 1.11611 1.05198 1.72257 1.21127 0.89727 0.85075 0.76037 1.90641 1.19039 1.85132 1.52576 1.21264 0.93216 0.80865 1.07206 1.55207 1.22674 1.20240 1.88808 1.00897 0.72696 0.71415 0.73754 1.93557 1.61412 1.54972 1.87391 1.93554 1.73835 1.85076 1.44108 1.30302 1.13840 1.14744 1.17452 1.20727 0.90594 0.96874 0.99857 1.21438 1.01030 0.98485 0.92479 1.18636 0.93263 0.95733 0.95568 1.21436 0.99883 0.99718 0.93374 1.21413 0.97005 0.95145 0.97866 1.21305 0.93331 0.99793 0.99785 1.21430 1.01224 0.97144 0.92547 1.18435 0.94201 1.01225 0.96263 1.21192 0.99693 0.90125 0.90091 0.92328 0.99311 0.99057 0.75015 0.85097 0.84966 0.73645 0.82751 0.81895 0.82762 0.82822 0.83128 0.83621 0.83017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.29 21.45 0.28 -55.01 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.98 41.30 29.54 68.60 2.03 43.33 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.55 -29.02 9.28 25.60 0.24 -28.78 16 8 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 9 C 0.26 13.92 5.43 85.63 0.46 14.39 16 10 N -0.70 -27.30 5.55 -466.79 -2.59 -29.89 16 11 C 0.49 18.12 7.90 87.66 0.69 18.82 16 12 O -0.59 -27.34 15.73 -3.01 -0.05 -27.39 16 13 C 0.10 2.46 6.70 85.63 0.57 3.04 16 14 N -1.11 -27.50 5.93 -190.79 -1.13 -28.63 16 15 S 2.72 64.95 5.72 -56.49 -0.32 64.63 16 16 O -0.98 -28.45 17.21 -128.00 -2.20 -30.65 16 17 O -0.98 -27.19 16.71 -128.00 -2.14 -29.33 16 18 C -0.67 -13.53 5.91 22.05 0.13 -13.40 16 19 C -0.06 -1.06 9.42 22.05 0.21 -0.85 16 20 C -0.12 -1.71 9.77 22.33 0.22 -1.49 16 21 C -0.03 -0.52 5.74 -21.30 -0.12 -0.64 16 22 C -0.13 -1.46 9.77 22.33 0.22 -1.24 16 23 C -0.10 -0.92 9.95 22.04 0.22 -0.70 16 24 C -0.12 -1.31 9.95 22.04 0.22 -1.10 16 25 C -0.11 -1.48 9.77 22.33 0.22 -1.26 16 26 C -0.10 -1.82 5.74 -21.29 -0.12 -1.94 16 27 C 0.01 0.17 9.22 22.33 0.21 0.37 16 28 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.41 12.61 8.32 -92.71 -0.77 11.84 16 32 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.13 2.53 7.76 -2.39 -0.02 2.51 16 34 H 0.43 11.59 7.70 -96.74 -0.75 10.84 16 35 H 0.15 2.15 7.56 -2.91 -0.02 2.13 16 36 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.15 0.59 8.06 -2.91 -0.02 0.56 16 39 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 40 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 41 H 0.15 2.61 7.54 -2.91 -0.02 2.58 16 Total: -1.00 -81.13 370.49 -2.73 -83.86 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -0.43 Total: 23.27 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 3.82 Total: -14.18 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -3.44 Total: -113.53 kcal Atomic # 8 Polarization: -82.99 SS G_CDS: -4.39 Total: -87.38 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 64.95 SS G_CDS: -0.32 Total: 64.63 kcal Total: -81.13 -2.73 -83.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352668849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.057 kcal (2) G-P(sol) polarization free energy of solvation -81.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds