Wall clock time and date at job start Wed Apr 1 2020 04:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46919 * 2 1 4 4 S 1.81400 * 109.47321 * 180.02562 * 3 2 1 5 5 O 1.42100 * 110.54536 * 68.37151 * 4 3 2 6 6 O 1.42107 * 110.54145 * 291.62526 * 4 3 2 7 7 N 1.65594 * 104.45215 * 179.97438 * 4 3 2 8 8 C 1.39894 * 120.00031 * 60.04325 * 7 4 3 9 9 C 1.38622 * 120.01150 * 35.48383 * 8 7 4 10 10 C 1.38912 * 119.89687 * 179.97438 * 9 8 7 11 11 N 1.39502 * 120.03882 * 179.97438 * 10 9 8 12 12 C 1.34780 * 120.00349 * 24.79708 * 11 10 9 13 13 O 1.21782 * 119.99571 * 5.54726 * 12 11 10 14 14 C 1.41718 * 120.00083 * 185.55424 * 12 11 10 15 15 H 1.08001 * 120.00213 * 0.02562 * 14 12 11 16 16 C 1.40138 * 119.99716 * 179.97438 * 14 12 11 17 17 N 1.30634 * 120.00081 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99975 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47141 * 60.00268 * 18 16 14 20 20 H 1.48497 * 109.47177 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47253 * 300.00264 * 18 16 14 22 22 C 1.39418 * 119.92593 * 359.97438 * 10 9 8 23 23 F 1.35103 * 119.98803 * 180.02562 * 22 10 9 24 24 C 1.38260 * 120.02130 * 359.97438 * 22 10 9 25 25 C 1.38409 * 120.10817 * 0.27647 * 24 22 10 26 26 F 1.35102 * 119.96756 * 179.72097 * 25 24 22 27 27 H 1.09005 * 109.46646 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47209 * 299.99956 * 1 2 3 29 29 H 1.08996 * 109.47088 * 60.00183 * 1 2 3 30 30 H 1.08998 * 109.47209 * 240.00044 * 2 1 3 31 31 H 1.08999 * 109.47568 * 119.99638 * 2 1 3 32 32 H 1.08998 * 109.47144 * 60.00005 * 3 2 1 33 33 H 1.09003 * 109.47399 * 300.00041 * 3 2 1 34 34 H 0.97002 * 120.00090 * 240.04467 * 7 4 3 35 35 H 1.08004 * 120.04724 * 359.95742 * 9 8 7 36 36 H 0.97000 * 120.00092 * 204.79856 * 11 10 9 37 37 H 0.97003 * 119.99737 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.94362 * 179.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8539 1.4426 -0.0008 5 8 4.3522 0.9524 -1.2380 6 8 4.3531 0.9521 1.2360 7 7 4.2671 3.0462 -0.0014 8 6 3.8562 3.8748 1.0482 9 6 3.7900 3.3763 2.3399 10 6 3.3822 4.2013 3.3804 11 7 3.3140 3.7026 4.6815 12 6 4.0750 2.6497 5.0404 13 8 4.8949 2.1975 4.2617 14 6 3.9210 2.0688 6.3239 15 1 3.1935 2.4695 7.0142 16 6 4.7119 0.9737 6.6968 17 7 5.5915 0.4887 5.8616 18 14 4.5094 0.2085 8.3888 19 1 3.1174 -0.2844 8.5458 20 1 5.4554 -0.9268 8.5350 21 1 4.7940 1.2279 9.4305 22 6 3.0412 5.5284 3.1231 23 9 2.6449 6.3321 4.1342 24 6 3.1095 6.0226 1.8336 25 6 3.5106 5.2001 0.7952 26 9 3.5709 5.6844 -0.4646 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 4.7940 3.4110 -0.7296 35 1 4.0548 2.3479 2.5370 36 1 2.7188 4.1135 5.3278 37 1 6.1392 -0.2690 6.1199 38 1 2.8446 7.0507 1.6356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356197988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:14 Heat of formation + Delta-G solvation = -169.745376 kcal Electronic energy + Delta-G solvation = -29322.944583 eV Core-core repulsion = 24735.875581 eV Total energy + Delta-G solvation = -4587.069002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.69027 -48.57690 -39.47299 -37.50731 -36.96009 -35.86762 -35.00183 -34.93355 -33.35019 -32.44144 -29.56836 -28.24566 -27.82586 -26.42716 -23.36548 -22.29172 -22.05176 -20.30350 -19.43784 -18.20471 -18.11471 -17.61025 -17.16896 -16.48997 -16.28605 -16.00533 -15.70474 -15.68521 -15.48479 -15.00326 -14.74240 -14.31266 -14.18077 -13.80737 -13.73450 -13.62129 -12.89390 -12.79509 -12.70337 -12.66254 -12.49351 -12.25981 -12.04627 -11.95753 -11.71808 -11.58653 -11.37974 -11.23337 -11.07388 -11.02732 -10.74990 -10.63817 -10.41081 -10.33795 -9.50706 -8.95564 -8.28444 -7.75180 -7.20474 -6.41733 -4.97763 0.19748 1.26251 1.38764 2.59292 3.04495 3.10461 3.12431 3.56810 3.73326 3.90894 4.18882 4.22188 4.31244 4.37761 4.42329 4.63701 4.70312 4.86513 4.93680 5.05138 5.20442 5.44527 5.46940 5.50414 5.62568 5.70542 5.77966 5.83548 5.99929 6.02537 6.13229 6.35433 6.70085 6.89655 7.13843 7.20687 7.63946 7.85211 7.96479 8.73452 9.09242 10.29314 10.48166 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.009179 B = 0.004768 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.547119 B = 5871.315056 C = 7620.444580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.627 4.627 4 S 2.594 3.406 5 O -0.957 6.957 6 O -0.908 6.908 7 N -1.049 6.049 8 C 0.136 3.864 9 C -0.160 4.160 10 C 0.196 3.804 11 N -0.685 5.685 12 C 0.531 3.469 13 O -0.543 6.543 14 C -0.533 4.533 15 H 0.072 0.928 16 C 0.086 3.914 17 N -0.736 5.736 18 Si 0.914 3.086 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.266 1.266 22 C 0.039 3.961 23 F -0.136 7.136 24 C -0.139 4.139 25 C 0.044 3.956 26 F -0.140 7.140 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.425 0.575 35 H 0.215 0.785 36 H 0.399 0.601 37 H 0.276 0.724 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.203 4.125 -9.777 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.756 4.756 4 S 2.688 3.312 5 O -0.947 6.947 6 O -0.898 6.898 7 N -0.797 5.797 8 C 0.037 3.963 9 C -0.184 4.184 10 C 0.091 3.909 11 N -0.326 5.326 12 C 0.341 3.659 13 O -0.425 6.425 14 C -0.567 4.567 15 H 0.090 0.910 16 C -0.138 4.138 17 N -0.362 5.362 18 Si 0.738 3.262 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.190 1.190 22 C 0.015 3.985 23 F -0.115 7.115 24 C -0.160 4.160 25 C 0.020 3.980 26 F -0.119 7.119 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.261 0.739 35 H 0.231 0.769 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.905 2.741 -10.163 13.164 hybrid contribution -0.778 1.021 0.746 1.485 sum -8.683 3.762 -9.418 13.351 Atomic orbital electron populations 1.21704 0.93827 1.02254 1.02408 1.21266 0.98737 0.91688 1.03877 1.30583 1.26677 1.06347 1.12036 1.05874 0.77997 0.72353 0.75003 1.93590 1.78242 1.77344 1.45573 1.93756 1.75972 1.76924 1.43128 1.53307 1.65823 1.29543 1.31030 1.17351 1.01110 0.89812 0.87984 1.22517 1.02590 1.06272 0.87032 1.17856 0.95657 0.89342 0.88017 1.44430 1.44943 1.35462 1.07765 1.17224 0.80715 0.78453 0.89459 1.90701 1.36633 1.61774 1.53388 1.19967 1.22116 1.15073 0.99585 0.91021 1.25766 0.93617 0.95941 0.98483 1.70002 1.14129 1.17977 1.34138 0.86316 0.79057 0.78919 0.81904 1.19017 1.20267 1.19041 1.17109 1.09263 0.87273 0.84869 1.91450 1.88943 1.72489 1.58647 1.20499 1.04349 1.00826 0.90279 1.16938 1.09533 0.92007 0.79570 1.91432 1.94836 1.88290 1.37325 0.91933 0.91993 0.92430 0.90452 0.89734 0.84448 0.84972 0.73867 0.76906 0.76708 0.91308 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.27 5.94 -26.73 -0.16 -1.43 16 3 C -0.63 -7.14 5.90 37.16 0.22 -6.92 16 4 S 2.59 39.45 5.23 -107.50 -0.56 38.88 16 5 O -0.96 -15.78 18.08 -57.54 -1.04 -16.82 16 6 O -0.91 -18.69 15.05 -57.54 -0.87 -19.56 16 7 N -1.05 -15.31 5.58 32.47 0.18 -15.13 16 8 C 0.14 2.24 6.13 -83.65 -0.51 1.73 16 9 C -0.16 -3.22 7.91 -39.19 -0.31 -3.53 16 10 C 0.20 3.87 6.44 -83.68 -0.54 3.33 16 11 N -0.69 -14.75 5.28 -12.39 -0.07 -14.82 16 12 C 0.53 14.14 7.37 -14.93 -0.11 14.03 16 13 O -0.54 -16.30 12.02 5.12 0.06 -16.24 16 14 C -0.53 -13.94 9.31 -37.54 -0.35 -14.29 16 15 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 16 C 0.09 2.25 5.50 -17.35 -0.10 2.15 16 17 N -0.74 -20.79 11.73 55.56 0.65 -20.14 16 18 Si 0.91 18.82 29.56 -169.99 -5.02 13.80 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 C 0.04 0.65 7.31 -39.13 -0.29 0.37 16 23 F -0.14 -2.20 16.81 2.25 0.04 -2.16 16 24 C -0.14 -1.99 9.99 -39.51 -0.39 -2.39 16 25 C 0.04 0.66 7.32 -39.13 -0.29 0.37 16 26 F -0.14 -1.92 16.96 2.25 0.04 -1.88 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.14 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.13 1.15 8.14 -51.92 -0.42 0.73 16 34 H 0.42 5.23 8.77 -34.47 -0.30 4.93 16 35 H 0.21 5.05 2.89 -52.48 -0.15 4.90 16 36 H 0.40 7.43 8.40 -40.82 -0.34 7.09 16 37 H 0.28 7.08 8.29 -40.82 -0.34 6.74 16 38 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -34.73 347.91 -7.52 -42.26 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -3.72 Total: 14.08 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.46 Total: -7.50 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.77 Total: -50.09 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -1.84 Total: -52.62 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.04 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Atomic # 16 Polarization: 39.45 SS G_CDS: -0.56 Total: 38.88 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.73 -7.52 -42.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356197988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.487 kcal (2) G-P(sol) polarization free energy of solvation -34.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds