Wall clock time and date at job start Wed Apr 1 2020 04:48:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53001 * 109.46919 * 2 1
4 4 S 1.81400 * 109.47321 * 180.02562 * 3 2 1
5 5 O 1.42100 * 110.54536 * 68.37151 * 4 3 2
6 6 O 1.42107 * 110.54145 * 291.62526 * 4 3 2
7 7 N 1.65594 * 104.45215 * 179.97438 * 4 3 2
8 8 C 1.39894 * 120.00031 * 60.04325 * 7 4 3
9 9 C 1.38622 * 120.01150 * 35.48383 * 8 7 4
10 10 C 1.38912 * 119.89687 * 179.97438 * 9 8 7
11 11 N 1.39502 * 120.03882 * 179.97438 * 10 9 8
12 12 C 1.34780 * 120.00349 * 24.79708 * 11 10 9
13 13 O 1.21782 * 119.99571 * 5.54726 * 12 11 10
14 14 C 1.41718 * 120.00083 * 185.55424 * 12 11 10
15 15 H 1.08001 * 120.00213 * 0.02562 * 14 12 11
16 16 C 1.40138 * 119.99716 * 179.97438 * 14 12 11
17 17 N 1.30634 * 120.00081 * 0.02562 * 16 14 12
18 18 Si 1.86798 * 119.99975 * 179.97438 * 16 14 12
19 19 H 1.48508 * 109.47141 * 60.00268 * 18 16 14
20 20 H 1.48497 * 109.47177 * 179.97438 * 18 16 14
21 21 H 1.48504 * 109.47253 * 300.00264 * 18 16 14
22 22 C 1.39418 * 119.92593 * 359.97438 * 10 9 8
23 23 F 1.35103 * 119.98803 * 180.02562 * 22 10 9
24 24 C 1.38260 * 120.02130 * 359.97438 * 22 10 9
25 25 C 1.38409 * 120.10817 * 0.27647 * 24 22 10
26 26 F 1.35102 * 119.96756 * 179.72097 * 25 24 22
27 27 H 1.09005 * 109.46646 * 180.02562 * 1 2 3
28 28 H 1.08998 * 109.47209 * 299.99956 * 1 2 3
29 29 H 1.08996 * 109.47088 * 60.00183 * 1 2 3
30 30 H 1.08998 * 109.47209 * 240.00044 * 2 1 3
31 31 H 1.08999 * 109.47568 * 119.99638 * 2 1 3
32 32 H 1.08998 * 109.47144 * 60.00005 * 3 2 1
33 33 H 1.09003 * 109.47399 * 300.00041 * 3 2 1
34 34 H 0.97002 * 120.00090 * 240.04467 * 7 4 3
35 35 H 1.08004 * 120.04724 * 359.95742 * 9 8 7
36 36 H 0.97000 * 120.00092 * 204.79856 * 11 10 9
37 37 H 0.97003 * 119.99737 * 179.97438 * 17 16 14
38 38 H 1.08001 * 119.94362 * 179.97438 * 24 22 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 16 3.8539 1.4426 -0.0008
5 8 4.3522 0.9524 -1.2380
6 8 4.3531 0.9521 1.2360
7 7 4.2671 3.0462 -0.0014
8 6 3.8562 3.8748 1.0482
9 6 3.7900 3.3763 2.3399
10 6 3.3822 4.2013 3.3804
11 7 3.3140 3.7026 4.6815
12 6 4.0750 2.6497 5.0404
13 8 4.8949 2.1975 4.2617
14 6 3.9210 2.0688 6.3239
15 1 3.1935 2.4695 7.0142
16 6 4.7119 0.9737 6.6968
17 7 5.5915 0.4887 5.8616
18 14 4.5094 0.2085 8.3888
19 1 3.1174 -0.2844 8.5458
20 1 5.4554 -0.9268 8.5350
21 1 4.7940 1.2279 9.4305
22 6 3.0412 5.5284 3.1231
23 9 2.6449 6.3321 4.1342
24 6 3.1095 6.0226 1.8336
25 6 3.5106 5.2001 0.7952
26 9 3.5709 5.6844 -0.4646
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 1.8933 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8900
32 1 1.6766 1.9563 0.8900
33 1 1.6766 1.9564 -0.8900
34 1 4.7940 3.4110 -0.7296
35 1 4.0548 2.3479 2.5370
36 1 2.7188 4.1135 5.3278
37 1 6.1392 -0.2690 6.1199
38 1 2.8446 7.0507 1.6356
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000356197988.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:48:13
Heat of formation + Delta-G solvation = -196.446909 kcal
Electronic energy + Delta-G solvation = -29324.102448 eV
Core-core repulsion = 24735.875581 eV
Total energy + Delta-G solvation = -4588.226867 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.079 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-49.90864 -49.88480 -41.00574 -39.18288 -38.30670 -37.22317 -36.40899 -35.87547
-35.03527 -34.36717 -31.06271 -29.72320 -28.70417 -28.24600 -24.78566 -23.69815
-22.97411 -22.03668 -20.72259 -19.76432 -19.44344 -18.97517 -18.63375 -17.84840
-17.63683 -17.48011 -17.22665 -16.90868 -16.85045 -16.26173 -15.93477 -15.80970
-15.54114 -15.33831 -15.16261 -14.62561 -14.55472 -14.30617 -13.93449 -13.75626
-13.65043 -13.51855 -13.41965 -13.29818 -13.14940 -13.02914 -12.80895 -12.70425
-12.53432 -12.36919 -12.05963 -11.95511 -11.88202 -11.56361 -11.04706 -10.80915
-9.88340 -9.53458 -8.75503 -8.36270 -7.02027 -1.00073 -0.09431 0.03006
1.37621 1.41002 1.42904 1.56300 2.11829 2.21172 2.49311 2.55633
2.71184 2.92064 3.09362 3.28677 3.43240 3.60047 3.64817 3.69174
3.79441 4.13705 4.18451 4.36309 4.42287 4.57382 4.66923 4.69454
4.81225 4.99467 5.01614 5.05921 5.21585 5.29776 5.43056 5.47148
5.83210 5.87917 6.09077 6.16914 6.74074 7.27964 8.35781 8.55623
Molecular weight = 348.08amu
Principal moments of inertia in cm(-1)
A = 0.009179 B = 0.004768 C = 0.003673
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3049.547119 B = 5871.315056 C = 7620.444580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.129 4.129
3 C -0.599 4.599
4 S 2.590 3.410
5 O -0.976 6.976
6 O -0.973 6.973
7 N -1.044 6.044
8 C 0.141 3.859
9 C -0.187 4.187
10 C 0.165 3.835
11 N -0.684 5.684
12 C 0.521 3.479
13 O -0.588 6.588
14 C -0.560 4.560
15 H 0.093 0.907
16 C 0.032 3.968
17 N -0.794 5.794
18 Si 0.999 3.001
19 H -0.252 1.252
20 H -0.275 1.275
21 H -0.253 1.253
22 C 0.051 3.949
23 F -0.131 7.131
24 C -0.117 4.117
25 C 0.066 3.934
26 F -0.125 7.125
27 H 0.073 0.927
28 H 0.058 0.942
29 H 0.076 0.924
30 H 0.090 0.910
31 H 0.067 0.933
32 H 0.141 0.859
33 H 0.172 0.828
34 H 0.435 0.565
35 H 0.180 0.820
36 H 0.410 0.590
37 H 0.279 0.721
38 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.571 6.061 -10.343 16.662
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.169 4.169
3 C -0.733 4.733
4 S 2.689 3.311
5 O -0.966 6.966
6 O -0.963 6.963
7 N -0.793 5.793
8 C 0.042 3.958
9 C -0.211 4.211
10 C 0.063 3.937
11 N -0.327 5.327
12 C 0.331 3.669
13 O -0.473 6.473
14 C -0.595 4.595
15 H 0.111 0.889
16 C -0.187 4.187
17 N -0.421 5.421
18 Si 0.818 3.182
19 H -0.176 1.176
20 H -0.200 1.200
21 H -0.177 1.177
22 C 0.027 3.973
23 F -0.109 7.109
24 C -0.138 4.138
25 C 0.041 3.959
26 F -0.103 7.103
27 H 0.092 0.908
28 H 0.077 0.923
29 H 0.095 0.905
30 H 0.109 0.891
31 H 0.085 0.915
32 H 0.159 0.841
33 H 0.189 0.811
34 H 0.274 0.726
35 H 0.196 0.804
36 H 0.246 0.754
37 H 0.089 0.911
38 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges -10.254 4.740 -10.768 15.606
hybrid contribution -0.125 0.528 0.718 0.900
sum -10.379 5.268 -10.051 15.378
Atomic orbital electron populations
1.21730 0.91779 1.03376 1.03190 1.21460 1.00484 0.91057 1.03879
1.30378 1.21138 1.07620 1.14154 1.05723 0.79979 0.72047 0.73320
1.93552 1.79881 1.77705 1.45464 1.93705 1.78742 1.78248 1.45599
1.53121 1.66349 1.29028 1.30820 1.17230 1.00738 0.90721 0.87071
1.22199 1.04582 1.05362 0.88976 1.18034 0.97782 0.90892 0.86982
1.43859 1.44911 1.34805 1.09092 1.17508 0.80677 0.79213 0.89495
1.90685 1.38568 1.63499 1.54581 1.20522 1.22972 1.15818 1.00148
0.88876 1.27011 0.92516 0.96054 1.03139 1.70180 1.15819 1.19034
1.37098 0.85038 0.79533 0.77922 0.75687 1.17558 1.19967 1.17665
1.17035 1.08443 0.85968 0.85870 1.91470 1.88785 1.71993 1.58694
1.20828 1.02012 1.02352 0.88561 1.16821 1.07822 0.90949 0.80294
1.91486 1.94552 1.87907 1.36389 0.90786 0.92302 0.90521 0.89111
0.91450 0.84073 0.81066 0.72628 0.80366 0.75380 0.91081 0.79455
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.27 9.91 71.98 0.71 -1.56 16
2 C -0.13 -2.71 5.94 30.59 0.18 -2.53 16
3 C -0.60 -12.95 5.90 71.98 0.42 -12.53 16
4 S 2.59 81.48 5.23 -56.49 -0.30 81.19 16
5 O -0.98 -32.75 18.08 -127.65 -2.31 -35.06 16
6 O -0.97 -43.63 15.05 -127.65 -1.92 -45.55 16
7 N -1.04 -30.35 5.58 -51.18 -0.29 -30.63 16
8 C 0.14 4.58 6.13 38.20 0.23 4.82 16
9 C -0.19 -7.78 7.91 22.52 0.18 -7.60 16
10 C 0.17 6.62 6.44 38.37 0.25 6.86 16
11 N -0.68 -30.41 5.28 -311.28 -1.64 -32.05 16
12 C 0.52 29.14 7.37 85.10 0.63 29.77 16
13 O -0.59 -37.77 12.02 -4.61 -0.06 -37.83 16
14 C -0.56 -30.23 9.31 23.59 0.22 -30.01 16
15 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16
16 C 0.03 1.71 5.50 85.33 0.47 2.18 16
17 N -0.79 -47.30 11.73 21.85 0.26 -47.04 16
18 Si 1.00 39.10 29.56 68.60 2.03 41.13 16
19 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16
20 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16
21 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16
22 C 0.05 1.59 7.31 22.56 0.16 1.76 16
23 F -0.13 -3.90 16.81 44.97 0.76 -3.15 16
24 C -0.12 -2.92 9.99 22.32 0.22 -2.69 16
25 C 0.07 1.76 7.32 22.56 0.17 1.93 16
26 F -0.12 -2.91 16.96 44.97 0.76 -2.14 16
27 H 0.07 1.02 8.14 -2.38 -0.02 1.01 16
28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16
31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
32 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16
33 H 0.17 2.38 8.14 -2.39 -0.02 2.36 16
34 H 0.44 10.40 8.77 -96.75 -0.85 9.55 16
35 H 0.18 9.10 2.89 -2.91 -0.01 9.09 16
36 H 0.41 15.55 8.40 -92.71 -0.78 14.77 16
37 H 0.28 15.13 8.29 -92.71 -0.77 14.36 16
38 H 0.19 3.19 8.06 -2.91 -0.02 3.16 16
Total: -1.00 -81.40 347.91 0.68 -80.72
By element:
Atomic # 1 Polarization: 40.49 SS G_CDS: -0.47 Total: 40.03 kcal
Atomic # 6 Polarization: -13.45 SS G_CDS: 3.85 Total: -9.60 kcal
Atomic # 7 Polarization: -108.06 SS G_CDS: -1.67 Total: -109.73 kcal
Atomic # 8 Polarization: -114.15 SS G_CDS: -4.28 Total: -118.43 kcal
Atomic # 9 Polarization: -6.81 SS G_CDS: 1.52 Total: -5.29 kcal
Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal
Atomic # 16 Polarization: 81.48 SS G_CDS: -0.30 Total: 81.19 kcal
Total: -81.40 0.68 -80.72 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356197988.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -115.726 kcal
(2) G-P(sol) polarization free energy of solvation -81.396 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.122 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.721 kcal
(6) G-S(sol) free energy of system = (1) + (5) -196.447 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds