Wall clock time and date at job start Wed Apr 1 2020 04:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46919 * 2 1 4 4 S 1.81400 * 109.47321 * 180.02562 * 3 2 1 5 5 O 1.42100 * 110.54536 * 68.37151 * 4 3 2 6 6 O 1.42107 * 110.54145 * 291.62526 * 4 3 2 7 7 N 1.65594 * 104.45215 * 179.97438 * 4 3 2 8 8 C 1.39894 * 120.00031 * 60.04325 * 7 4 3 9 9 C 1.38622 * 120.01150 * 35.48383 * 8 7 4 10 10 C 1.38912 * 119.89687 * 179.97438 * 9 8 7 11 11 N 1.39502 * 120.03882 * 179.97438 * 10 9 8 12 12 C 1.34780 * 120.00349 * 24.79708 * 11 10 9 13 13 O 1.21782 * 119.99571 * 5.54726 * 12 11 10 14 14 C 1.41718 * 120.00083 * 185.55424 * 12 11 10 15 15 H 1.08001 * 120.00213 * 0.02562 * 14 12 11 16 16 C 1.40138 * 119.99716 * 179.97438 * 14 12 11 17 17 N 1.30634 * 120.00081 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99975 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47141 * 60.00268 * 18 16 14 20 20 H 1.48497 * 109.47177 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47253 * 300.00264 * 18 16 14 22 22 C 1.39418 * 119.92593 * 359.97438 * 10 9 8 23 23 F 1.35103 * 119.98803 * 180.02562 * 22 10 9 24 24 C 1.38260 * 120.02130 * 359.97438 * 22 10 9 25 25 C 1.38409 * 120.10817 * 0.27647 * 24 22 10 26 26 F 1.35102 * 119.96756 * 179.72097 * 25 24 22 27 27 H 1.09005 * 109.46646 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47209 * 299.99956 * 1 2 3 29 29 H 1.08996 * 109.47088 * 60.00183 * 1 2 3 30 30 H 1.08998 * 109.47209 * 240.00044 * 2 1 3 31 31 H 1.08999 * 109.47568 * 119.99638 * 2 1 3 32 32 H 1.08998 * 109.47144 * 60.00005 * 3 2 1 33 33 H 1.09003 * 109.47399 * 300.00041 * 3 2 1 34 34 H 0.97002 * 120.00090 * 240.04467 * 7 4 3 35 35 H 1.08004 * 120.04724 * 359.95742 * 9 8 7 36 36 H 0.97000 * 120.00092 * 204.79856 * 11 10 9 37 37 H 0.97003 * 119.99737 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.94362 * 179.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8539 1.4426 -0.0008 5 8 4.3522 0.9524 -1.2380 6 8 4.3531 0.9521 1.2360 7 7 4.2671 3.0462 -0.0014 8 6 3.8562 3.8748 1.0482 9 6 3.7900 3.3763 2.3399 10 6 3.3822 4.2013 3.3804 11 7 3.3140 3.7026 4.6815 12 6 4.0750 2.6497 5.0404 13 8 4.8949 2.1975 4.2617 14 6 3.9210 2.0688 6.3239 15 1 3.1935 2.4695 7.0142 16 6 4.7119 0.9737 6.6968 17 7 5.5915 0.4887 5.8616 18 14 4.5094 0.2085 8.3888 19 1 3.1174 -0.2844 8.5458 20 1 5.4554 -0.9268 8.5350 21 1 4.7940 1.2279 9.4305 22 6 3.0412 5.5284 3.1231 23 9 2.6449 6.3321 4.1342 24 6 3.1095 6.0226 1.8336 25 6 3.5106 5.2001 0.7952 26 9 3.5709 5.6844 -0.4646 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 4.7940 3.4110 -0.7296 35 1 4.0548 2.3479 2.5370 36 1 2.7188 4.1135 5.3278 37 1 6.1392 -0.2690 6.1199 38 1 2.8446 7.0507 1.6356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356197988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:13 Heat of formation + Delta-G solvation = -196.446909 kcal Electronic energy + Delta-G solvation = -29324.102448 eV Core-core repulsion = 24735.875581 eV Total energy + Delta-G solvation = -4588.226867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.90864 -49.88480 -41.00574 -39.18288 -38.30670 -37.22317 -36.40899 -35.87547 -35.03527 -34.36717 -31.06271 -29.72320 -28.70417 -28.24600 -24.78566 -23.69815 -22.97411 -22.03668 -20.72259 -19.76432 -19.44344 -18.97517 -18.63375 -17.84840 -17.63683 -17.48011 -17.22665 -16.90868 -16.85045 -16.26173 -15.93477 -15.80970 -15.54114 -15.33831 -15.16261 -14.62561 -14.55472 -14.30617 -13.93449 -13.75626 -13.65043 -13.51855 -13.41965 -13.29818 -13.14940 -13.02914 -12.80895 -12.70425 -12.53432 -12.36919 -12.05963 -11.95511 -11.88202 -11.56361 -11.04706 -10.80915 -9.88340 -9.53458 -8.75503 -8.36270 -7.02027 -1.00073 -0.09431 0.03006 1.37621 1.41002 1.42904 1.56300 2.11829 2.21172 2.49311 2.55633 2.71184 2.92064 3.09362 3.28677 3.43240 3.60047 3.64817 3.69174 3.79441 4.13705 4.18451 4.36309 4.42287 4.57382 4.66923 4.69454 4.81225 4.99467 5.01614 5.05921 5.21585 5.29776 5.43056 5.47148 5.83210 5.87917 6.09077 6.16914 6.74074 7.27964 8.35781 8.55623 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.009179 B = 0.004768 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.547119 B = 5871.315056 C = 7620.444580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C -0.599 4.599 4 S 2.590 3.410 5 O -0.976 6.976 6 O -0.973 6.973 7 N -1.044 6.044 8 C 0.141 3.859 9 C -0.187 4.187 10 C 0.165 3.835 11 N -0.684 5.684 12 C 0.521 3.479 13 O -0.588 6.588 14 C -0.560 4.560 15 H 0.093 0.907 16 C 0.032 3.968 17 N -0.794 5.794 18 Si 0.999 3.001 19 H -0.252 1.252 20 H -0.275 1.275 21 H -0.253 1.253 22 C 0.051 3.949 23 F -0.131 7.131 24 C -0.117 4.117 25 C 0.066 3.934 26 F -0.125 7.125 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.141 0.859 33 H 0.172 0.828 34 H 0.435 0.565 35 H 0.180 0.820 36 H 0.410 0.590 37 H 0.279 0.721 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.571 6.061 -10.343 16.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C -0.733 4.733 4 S 2.689 3.311 5 O -0.966 6.966 6 O -0.963 6.963 7 N -0.793 5.793 8 C 0.042 3.958 9 C -0.211 4.211 10 C 0.063 3.937 11 N -0.327 5.327 12 C 0.331 3.669 13 O -0.473 6.473 14 C -0.595 4.595 15 H 0.111 0.889 16 C -0.187 4.187 17 N -0.421 5.421 18 Si 0.818 3.182 19 H -0.176 1.176 20 H -0.200 1.200 21 H -0.177 1.177 22 C 0.027 3.973 23 F -0.109 7.109 24 C -0.138 4.138 25 C 0.041 3.959 26 F -0.103 7.103 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.159 0.841 33 H 0.189 0.811 34 H 0.274 0.726 35 H 0.196 0.804 36 H 0.246 0.754 37 H 0.089 0.911 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.254 4.740 -10.768 15.606 hybrid contribution -0.125 0.528 0.718 0.900 sum -10.379 5.268 -10.051 15.378 Atomic orbital electron populations 1.21730 0.91779 1.03376 1.03190 1.21460 1.00484 0.91057 1.03879 1.30378 1.21138 1.07620 1.14154 1.05723 0.79979 0.72047 0.73320 1.93552 1.79881 1.77705 1.45464 1.93705 1.78742 1.78248 1.45599 1.53121 1.66349 1.29028 1.30820 1.17230 1.00738 0.90721 0.87071 1.22199 1.04582 1.05362 0.88976 1.18034 0.97782 0.90892 0.86982 1.43859 1.44911 1.34805 1.09092 1.17508 0.80677 0.79213 0.89495 1.90685 1.38568 1.63499 1.54581 1.20522 1.22972 1.15818 1.00148 0.88876 1.27011 0.92516 0.96054 1.03139 1.70180 1.15819 1.19034 1.37098 0.85038 0.79533 0.77922 0.75687 1.17558 1.19967 1.17665 1.17035 1.08443 0.85968 0.85870 1.91470 1.88785 1.71993 1.58694 1.20828 1.02012 1.02352 0.88561 1.16821 1.07822 0.90949 0.80294 1.91486 1.94552 1.87907 1.36389 0.90786 0.92302 0.90521 0.89111 0.91450 0.84073 0.81066 0.72628 0.80366 0.75380 0.91081 0.79455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.13 -2.71 5.94 30.59 0.18 -2.53 16 3 C -0.60 -12.95 5.90 71.98 0.42 -12.53 16 4 S 2.59 81.48 5.23 -56.49 -0.30 81.19 16 5 O -0.98 -32.75 18.08 -127.65 -2.31 -35.06 16 6 O -0.97 -43.63 15.05 -127.65 -1.92 -45.55 16 7 N -1.04 -30.35 5.58 -51.18 -0.29 -30.63 16 8 C 0.14 4.58 6.13 38.20 0.23 4.82 16 9 C -0.19 -7.78 7.91 22.52 0.18 -7.60 16 10 C 0.17 6.62 6.44 38.37 0.25 6.86 16 11 N -0.68 -30.41 5.28 -311.28 -1.64 -32.05 16 12 C 0.52 29.14 7.37 85.10 0.63 29.77 16 13 O -0.59 -37.77 12.02 -4.61 -0.06 -37.83 16 14 C -0.56 -30.23 9.31 23.59 0.22 -30.01 16 15 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 16 C 0.03 1.71 5.50 85.33 0.47 2.18 16 17 N -0.79 -47.30 11.73 21.85 0.26 -47.04 16 18 Si 1.00 39.10 29.56 68.60 2.03 41.13 16 19 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 20 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 22 C 0.05 1.59 7.31 22.56 0.16 1.76 16 23 F -0.13 -3.90 16.81 44.97 0.76 -3.15 16 24 C -0.12 -2.92 9.99 22.32 0.22 -2.69 16 25 C 0.07 1.76 7.32 22.56 0.17 1.93 16 26 F -0.12 -2.91 16.96 44.97 0.76 -2.14 16 27 H 0.07 1.02 8.14 -2.38 -0.02 1.01 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.17 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.44 10.40 8.77 -96.75 -0.85 9.55 16 35 H 0.18 9.10 2.89 -2.91 -0.01 9.09 16 36 H 0.41 15.55 8.40 -92.71 -0.78 14.77 16 37 H 0.28 15.13 8.29 -92.71 -0.77 14.36 16 38 H 0.19 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -81.40 347.91 0.68 -80.72 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: -0.47 Total: 40.03 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 3.85 Total: -9.60 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -1.67 Total: -109.73 kcal Atomic # 8 Polarization: -114.15 SS G_CDS: -4.28 Total: -118.43 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 1.52 Total: -5.29 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Atomic # 16 Polarization: 81.48 SS G_CDS: -0.30 Total: 81.19 kcal Total: -81.40 0.68 -80.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356197988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.726 kcal (2) G-P(sol) polarization free energy of solvation -81.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds