Wall clock time and date at job start Wed Apr 1 2020 04:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38353 * 127.15611 * 2 1 4 4 C 1.39776 * 126.56298 * 0.02562 * 3 2 1 5 5 H 1.07999 * 120.00010 * 0.30705 * 4 3 2 6 6 C 1.40084 * 120.00159 * 180.30996 * 4 3 2 7 7 N 1.30817 * 119.99546 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00074 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47032 * 60.00256 * 8 6 4 10 10 H 1.48505 * 109.47129 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47069 * 300.00065 * 8 6 4 12 12 N 1.33099 * 106.87339 * 180.29084 * 3 2 1 13 13 N 1.28521 * 109.74229 * 359.73689 * 12 3 2 14 14 C 1.32387 * 110.20396 * 0.02562 * 13 12 3 15 15 S 1.76196 * 126.25536 * 179.97438 * 14 13 12 16 16 C 1.81002 * 100.00170 * 0.02562 * 15 14 13 17 17 C 1.50706 * 109.47036 * 179.97438 * 16 15 14 18 18 O 1.21245 * 119.99965 * 359.97438 * 17 16 15 19 19 C 1.47170 * 119.99638 * 179.97438 * 17 16 15 20 20 C 1.39851 * 120.16721 * 179.97438 * 19 17 16 21 21 C 1.37884 * 119.82148 * 180.02562 * 20 19 17 22 22 C 1.38406 * 120.17637 * 0.02562 * 21 20 19 23 23 N 1.48007 * 119.83016 * 179.97438 * 22 21 20 24 24 O 1.21803 * 119.99745 * 359.97438 * 23 22 21 25 25 O 1.21799 * 120.00052 * 179.72416 * 23 22 21 26 26 C 1.38404 * 120.34276 * 0.24904 * 22 21 20 27 27 C 1.37883 * 120.17770 * 359.44902 * 26 22 21 28 28 H 1.09001 * 109.46983 * 270.16096 * 1 2 3 29 29 H 1.08999 * 109.46809 * 30.16200 * 1 2 3 30 30 H 1.08994 * 109.47290 * 150.15993 * 1 2 3 31 31 H 0.97006 * 119.99526 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46905 * 60.00349 * 16 15 14 33 33 H 1.09002 * 109.46852 * 299.99724 * 16 15 14 34 34 H 1.08000 * 120.08728 * 0.04336 * 20 19 17 35 35 H 1.07999 * 119.91492 * 179.97438 * 21 20 19 36 36 H 1.08008 * 119.90924 * 179.71092 * 26 22 21 37 37 H 1.07996 * 120.09352 * 180.26871 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9088 2.4444 0.0005 5 1 0.8596 2.7005 0.0060 6 6 2.8769 3.4568 -0.0061 7 7 4.1477 3.1465 -0.0133 8 14 2.3532 5.2499 -0.0062 9 1 1.5488 5.5306 1.2101 10 1 3.5583 6.1176 -0.0132 11 1 1.5361 5.5268 -1.2149 12 7 3.5491 0.6413 -0.0065 13 7 3.5370 -0.6439 -0.0048 14 6 2.2903 -1.0894 0.0022 15 16 1.7872 -2.7780 0.0063 16 6 3.4058 -3.5882 -0.0009 17 6 3.2189 -5.0836 0.0021 18 8 2.1018 -5.5550 0.0089 19 6 4.3924 -5.9718 -0.0033 20 6 4.2231 -7.3600 0.0000 21 6 5.3276 -8.1854 -0.0045 22 6 6.6011 -7.6435 -0.0118 23 7 7.7813 -8.5367 -0.0160 24 8 7.6303 -9.7453 -0.0127 25 8 8.9034 -8.0632 -0.0275 26 6 6.7768 -6.2707 -0.0093 27 6 5.6825 -5.4319 -0.0111 28 1 -0.3633 0.0029 1.0277 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3633 -0.8914 -0.5113 31 1 4.8181 3.8476 -0.0175 32 1 3.9650 -3.2906 0.8861 33 1 3.9562 -3.2922 -0.8939 34 1 3.2300 -7.7843 0.0058 35 1 5.1986 -9.2577 -0.0016 36 1 7.7739 -5.8553 -0.0103 37 1 5.8212 -4.3608 -0.0136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357052488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:36 Heat of formation + Delta-G solvation = 63.656528 kcal Electronic energy + Delta-G solvation = -25775.405021 eV Core-core repulsion = 21649.146272 eV Total energy + Delta-G solvation = -4126.258749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.55148 -40.65870 -40.58825 -38.79358 -36.92574 -33.80447 -33.44351 -33.06743 -32.08417 -30.30080 -29.36345 -27.20961 -26.58274 -25.62431 -23.69192 -23.46602 -21.11433 -20.87704 -20.30909 -19.81317 -19.00052 -17.88943 -17.57531 -17.39338 -16.70988 -15.88381 -15.71482 -15.58982 -15.42637 -14.80298 -14.62027 -14.52270 -14.39742 -13.93577 -13.65354 -13.44904 -13.06922 -12.83907 -12.37572 -12.30218 -12.10169 -11.89616 -11.58171 -11.49800 -11.47806 -11.36162 -11.03080 -10.52994 -10.44757 -10.38260 -10.14527 -9.97430 -9.87346 -9.71461 -8.83661 -8.56371 -8.52360 -6.99274 -6.74728 -4.68370 -0.88260 0.41374 0.60298 0.96602 1.63952 1.74078 2.55854 2.84826 2.86023 3.00370 3.02402 3.24595 3.36036 3.79251 3.81344 3.93472 4.12565 4.22767 4.30261 4.30708 4.58041 4.74151 5.02611 5.11733 5.17536 5.20666 5.21846 5.40823 5.44866 5.46746 5.68357 5.80441 5.96891 5.99952 6.62650 6.78169 6.88745 7.13697 7.25201 7.37016 7.76075 8.07209 8.59895 8.74241 10.17534 10.49456 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.002046 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.870072 B =13680.127873 C =15100.540953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.514 5.514 3 C 0.348 3.652 4 C -0.445 4.445 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.736 5.736 8 Si 0.922 3.078 9 H -0.265 1.265 10 H -0.275 1.275 11 H -0.265 1.265 12 N -0.332 5.332 13 N -0.287 5.287 14 C 0.031 3.969 15 S 0.003 5.997 16 C -0.160 4.160 17 C 0.412 3.588 18 O -0.419 6.419 19 C -0.105 4.105 20 C -0.062 4.062 21 C -0.067 4.067 22 C -0.022 4.022 23 N 0.024 4.976 24 O -0.157 6.157 25 O -0.152 6.152 26 C -0.063 4.063 27 C -0.068 4.068 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.281 0.719 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 -15.709 -0.058 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.216 5.216 3 C 0.104 3.896 4 C -0.486 4.486 5 H 0.103 0.897 6 C -0.148 4.148 7 N -0.359 5.359 8 Si 0.745 3.255 9 H -0.189 1.189 10 H -0.200 1.200 11 H -0.189 1.189 12 N -0.180 5.180 13 N -0.134 5.134 14 C -0.341 4.341 15 S 0.230 5.770 16 C -0.309 4.309 17 C 0.286 3.714 18 O -0.291 6.291 19 C -0.108 4.108 20 C -0.081 4.081 21 C -0.086 4.086 22 C -0.104 4.104 23 N 0.545 4.455 24 O -0.373 6.373 25 O -0.369 6.369 26 C -0.082 4.082 27 C -0.087 4.087 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.177 0.823 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.864 -15.966 -0.055 15.990 hybrid contribution -0.004 1.367 0.011 1.367 sum -0.867 -14.599 -0.045 14.625 Atomic orbital electron populations 1.21517 0.78390 1.02799 1.01755 1.45997 1.06134 1.05188 1.64280 1.21618 0.84682 0.88427 0.94843 1.18094 0.94759 0.86438 1.49275 0.89745 1.25806 0.94342 1.01396 0.93242 1.69992 1.00731 1.35247 1.29975 0.86159 0.79032 0.80469 0.79813 1.18913 1.20012 1.18913 1.75442 1.15287 0.97710 1.29574 1.74485 1.15093 1.07859 1.15969 1.25454 0.91780 0.93054 1.23788 1.84960 1.05713 0.90552 1.95739 1.23873 1.03137 0.94350 1.09507 1.21884 0.87748 0.89745 0.72063 1.90586 1.26264 1.78300 1.33981 1.20909 0.95128 0.94696 1.00064 1.21472 0.99726 0.91640 0.95242 1.21037 0.89177 1.02663 0.95686 1.21446 0.85913 0.90786 1.12275 1.43651 1.02503 1.01642 0.97716 1.94552 1.92813 0.96779 1.53132 1.94570 1.09821 1.79667 1.52864 1.21110 1.02191 0.89914 0.95021 1.21717 0.89909 1.01862 0.95195 0.92442 0.90249 0.91484 0.90824 0.85192 0.85195 0.82272 0.82239 0.81968 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.75 10.87 59.85 0.65 2.40 16 2 N -0.51 -11.85 3.26 -123.18 -0.40 -12.25 16 3 C 0.35 9.33 7.53 -154.81 -1.17 8.16 16 4 C -0.45 -11.36 9.04 -38.31 -0.35 -11.70 16 5 H 0.08 1.94 7.31 -52.49 -0.38 1.56 16 6 C 0.08 1.92 5.50 -17.29 -0.10 1.83 16 7 N -0.74 -19.45 11.94 55.56 0.66 -18.79 16 8 Si 0.92 17.85 29.56 -169.99 -5.03 12.83 16 9 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 10 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 11 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 12 N -0.33 -9.48 10.48 31.26 0.33 -9.15 16 13 N -0.29 -7.27 11.62 30.89 0.36 -6.91 16 14 C 0.03 0.69 8.09 -87.28 -0.71 -0.02 16 15 S 0.00 0.06 20.92 -107.50 -2.25 -2.19 16 16 C -0.16 -2.06 4.32 36.01 0.16 -1.90 16 17 C 0.41 4.51 7.14 -30.68 -0.22 4.29 16 18 O -0.42 -5.55 15.86 5.59 0.09 -5.46 16 19 C -0.11 -0.89 5.87 -105.06 -0.62 -1.51 16 20 C -0.06 -0.46 9.60 -39.11 -0.38 -0.83 16 21 C -0.07 -0.48 9.53 -39.65 -0.38 -0.86 16 22 C -0.02 -0.19 6.86 -79.83 -0.55 -0.74 16 23 N 0.02 0.26 4.45 34.02 0.15 0.42 16 24 O -0.16 -1.80 18.43 -29.46 -0.54 -2.35 16 25 O -0.15 -1.79 18.43 -29.46 -0.54 -2.34 16 26 C -0.06 -0.48 9.53 -39.65 -0.38 -0.86 16 27 C -0.07 -0.50 9.47 -39.11 -0.37 -0.87 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.30 7.54 -51.93 -0.39 0.91 16 30 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 32 H 0.13 1.61 8.09 -51.92 -0.42 1.19 16 33 H 0.13 1.61 8.09 -51.92 -0.42 1.19 16 34 H 0.16 0.99 7.65 -52.49 -0.40 0.59 16 35 H 0.16 0.89 7.59 -52.49 -0.40 0.49 16 36 H 0.16 1.03 7.60 -52.48 -0.40 0.63 16 37 H 0.16 1.02 7.05 -52.49 -0.37 0.65 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -33.45 354.82 -9.36 -42.82 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.15 Total: 0.64 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -4.39 Total: -2.61 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 1.10 Total: -46.69 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.00 Total: -10.14 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.25 Total: -2.19 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.45 -9.36 -42.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357052488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.473 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds