Wall clock time and date at job start Wed Apr 1 2020 04:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38353 * 127.15611 * 2 1 4 4 C 1.39776 * 126.56298 * 0.02562 * 3 2 1 5 5 H 1.07999 * 120.00010 * 0.30705 * 4 3 2 6 6 C 1.40084 * 120.00159 * 180.30996 * 4 3 2 7 7 N 1.30817 * 119.99546 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00074 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47032 * 60.00256 * 8 6 4 10 10 H 1.48505 * 109.47129 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47069 * 300.00065 * 8 6 4 12 12 N 1.33099 * 106.87339 * 180.29084 * 3 2 1 13 13 N 1.28521 * 109.74229 * 359.73689 * 12 3 2 14 14 C 1.32387 * 110.20396 * 0.02562 * 13 12 3 15 15 S 1.76196 * 126.25536 * 179.97438 * 14 13 12 16 16 C 1.81002 * 100.00170 * 0.02562 * 15 14 13 17 17 C 1.50706 * 109.47036 * 179.97438 * 16 15 14 18 18 O 1.21245 * 119.99965 * 359.97438 * 17 16 15 19 19 C 1.47170 * 119.99638 * 179.97438 * 17 16 15 20 20 C 1.39851 * 120.16721 * 179.97438 * 19 17 16 21 21 C 1.37884 * 119.82148 * 180.02562 * 20 19 17 22 22 C 1.38406 * 120.17637 * 0.02562 * 21 20 19 23 23 N 1.48007 * 119.83016 * 179.97438 * 22 21 20 24 24 O 1.21803 * 119.99745 * 359.97438 * 23 22 21 25 25 O 1.21799 * 120.00052 * 179.72416 * 23 22 21 26 26 C 1.38404 * 120.34276 * 0.24904 * 22 21 20 27 27 C 1.37883 * 120.17770 * 359.44902 * 26 22 21 28 28 H 1.09001 * 109.46983 * 270.16096 * 1 2 3 29 29 H 1.08999 * 109.46809 * 30.16200 * 1 2 3 30 30 H 1.08994 * 109.47290 * 150.15993 * 1 2 3 31 31 H 0.97006 * 119.99526 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46905 * 60.00349 * 16 15 14 33 33 H 1.09002 * 109.46852 * 299.99724 * 16 15 14 34 34 H 1.08000 * 120.08728 * 0.04336 * 20 19 17 35 35 H 1.07999 * 119.91492 * 179.97438 * 21 20 19 36 36 H 1.08008 * 119.90924 * 179.71092 * 26 22 21 37 37 H 1.07996 * 120.09352 * 180.26871 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9088 2.4444 0.0005 5 1 0.8596 2.7005 0.0060 6 6 2.8769 3.4568 -0.0061 7 7 4.1477 3.1465 -0.0133 8 14 2.3532 5.2499 -0.0062 9 1 1.5488 5.5306 1.2101 10 1 3.5583 6.1176 -0.0132 11 1 1.5361 5.5268 -1.2149 12 7 3.5491 0.6413 -0.0065 13 7 3.5370 -0.6439 -0.0048 14 6 2.2903 -1.0894 0.0022 15 16 1.7872 -2.7780 0.0063 16 6 3.4058 -3.5882 -0.0009 17 6 3.2189 -5.0836 0.0021 18 8 2.1018 -5.5550 0.0089 19 6 4.3924 -5.9718 -0.0033 20 6 4.2231 -7.3600 0.0000 21 6 5.3276 -8.1854 -0.0045 22 6 6.6011 -7.6435 -0.0118 23 7 7.7813 -8.5367 -0.0160 24 8 7.6303 -9.7453 -0.0127 25 8 8.9034 -8.0632 -0.0275 26 6 6.7768 -6.2707 -0.0093 27 6 5.6825 -5.4319 -0.0111 28 1 -0.3633 0.0029 1.0277 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3633 -0.8914 -0.5113 31 1 4.8181 3.8476 -0.0175 32 1 3.9650 -3.2906 0.8861 33 1 3.9562 -3.2922 -0.8939 34 1 3.2300 -7.7843 0.0058 35 1 5.1986 -9.2577 -0.0016 36 1 7.7739 -5.8553 -0.0103 37 1 5.8212 -4.3608 -0.0136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357052488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:35 Heat of formation + Delta-G solvation = 45.657540 kcal Electronic energy + Delta-G solvation = -25776.185516 eV Core-core repulsion = 21649.146272 eV Total energy + Delta-G solvation = -4127.039244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.35216 -42.45860 -41.43209 -39.60643 -37.76912 -35.62767 -35.16176 -33.85869 -32.71870 -31.48804 -31.00379 -28.30079 -27.96848 -27.38180 -24.45450 -24.13802 -22.80178 -22.51653 -21.41511 -20.52821 -19.81853 -19.28045 -18.69197 -18.36721 -18.07391 -17.29045 -16.80298 -16.73192 -16.40796 -16.24182 -16.03405 -15.47771 -15.24645 -14.99474 -14.76472 -14.40027 -14.28018 -13.99211 -13.80092 -13.75561 -13.15811 -12.92768 -12.84407 -12.76778 -12.62315 -12.42367 -12.36233 -12.04957 -11.90281 -11.69961 -11.43485 -11.32915 -10.84662 -10.59332 -10.55656 -10.38339 -10.29272 -8.58367 -8.55062 -6.58471 -1.64852 -0.22935 -0.16896 0.21776 0.28079 0.91147 1.10493 1.19692 1.42533 1.56975 1.61804 2.18208 2.19005 2.44010 2.44468 2.50765 3.19718 3.33559 3.34296 3.50735 3.66964 3.80913 3.97386 4.07535 4.18415 4.35578 4.44488 4.53012 4.55610 4.60857 4.61872 4.82553 4.86282 4.95289 5.00274 5.27058 5.31613 5.56031 5.97924 6.02932 6.21253 6.37025 6.75530 6.90810 8.40014 8.62458 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.002046 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.870072 B =13680.127873 C =15100.540953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.521 5.521 3 C 0.318 3.682 4 C -0.471 4.471 5 H 0.102 0.898 6 C 0.030 3.970 7 N -0.785 5.785 8 Si 1.004 2.996 9 H -0.255 1.255 10 H -0.272 1.272 11 H -0.255 1.255 12 N -0.385 5.385 13 N -0.322 5.322 14 C 0.045 3.955 15 S 0.026 5.974 16 C -0.161 4.161 17 C 0.429 3.571 18 O -0.442 6.442 19 C -0.108 4.108 20 C -0.053 4.053 21 C -0.059 4.059 22 C -0.030 4.030 23 N 0.025 4.975 24 O -0.164 6.164 25 O -0.176 6.176 26 C -0.062 4.062 27 C -0.061 4.061 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.285 0.715 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.890 -16.271 -0.054 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.223 5.223 3 C 0.072 3.928 4 C -0.511 4.511 5 H 0.120 0.880 6 C -0.191 4.191 7 N -0.410 5.410 8 Si 0.823 3.177 9 H -0.179 1.179 10 H -0.197 1.197 11 H -0.179 1.179 12 N -0.232 5.232 13 N -0.166 5.166 14 C -0.328 4.328 15 S 0.252 5.748 16 C -0.310 4.310 17 C 0.304 3.696 18 O -0.316 6.316 19 C -0.111 4.111 20 C -0.072 4.072 21 C -0.077 4.077 22 C -0.113 4.113 23 N 0.542 4.458 24 O -0.381 6.381 25 O -0.389 6.389 26 C -0.081 4.081 27 C -0.080 4.080 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.192 0.808 35 H 0.196 0.804 36 H 0.190 0.810 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.380 -16.538 -0.052 16.708 hybrid contribution 0.405 1.289 0.012 1.351 sum -1.975 -15.249 -0.040 15.376 Atomic orbital electron populations 1.21850 0.75407 1.04439 1.03340 1.46344 1.08062 1.04494 1.63390 1.22009 0.85135 0.89849 0.95818 1.18583 0.95939 0.86587 1.50018 0.88033 1.26929 0.93967 1.06287 0.91900 1.70130 1.02269 1.37046 1.31563 0.84940 0.78690 0.73807 0.80295 1.17902 1.19650 1.17852 1.75309 1.17087 0.99226 1.31571 1.74359 1.16714 1.07056 1.18519 1.26455 0.91270 0.95608 1.19485 1.84911 1.08280 0.86494 1.95110 1.24082 1.00980 0.95564 1.10369 1.21726 0.88182 0.88677 0.71006 1.90592 1.27216 1.78289 1.35498 1.20686 0.94259 0.94787 1.01383 1.21603 1.00376 0.90973 0.94222 1.21227 0.88308 1.03633 0.94577 1.21628 0.85520 0.90890 1.13267 1.43929 1.02922 1.01752 0.97167 1.94535 1.92922 0.97443 1.53173 1.94566 1.10760 1.79655 1.53928 1.21247 1.02822 0.89527 0.94509 1.21801 0.89350 1.02393 0.94430 0.90801 0.89291 0.89207 0.90481 0.84495 0.84483 0.80839 0.80444 0.80950 0.80681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.09 10.87 127.77 1.39 4.47 16 2 N -0.52 -23.96 3.26 -543.63 -1.77 -25.73 16 3 C 0.32 17.40 7.53 133.23 1.00 18.41 16 4 C -0.47 -24.30 9.04 23.09 0.21 -24.09 16 5 H 0.10 4.64 7.31 -2.91 -0.02 4.62 16 6 C 0.03 1.51 5.50 85.29 0.47 1.98 16 7 N -0.79 -42.85 11.94 21.86 0.26 -42.59 16 8 Si 1.00 36.43 29.56 68.60 2.03 38.46 16 9 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 10 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 11 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 12 N -0.39 -22.72 10.48 -55.02 -0.58 -23.30 16 13 N -0.32 -16.60 11.62 -56.18 -0.65 -17.25 16 14 C 0.05 2.02 8.09 179.18 1.45 3.47 16 15 S 0.03 0.82 20.92 -56.49 -1.18 -0.36 16 16 C -0.16 -3.91 4.32 71.24 0.31 -3.60 16 17 C 0.43 8.51 7.14 28.04 0.20 8.71 16 18 O -0.44 -10.75 15.86 -2.92 -0.05 -10.80 16 19 C -0.11 -1.58 5.87 -20.15 -0.12 -1.70 16 20 C -0.05 -0.64 9.60 22.58 0.22 -0.42 16 21 C -0.06 -0.71 9.53 22.23 0.21 -0.49 16 22 C -0.03 -0.48 6.86 36.46 0.25 -0.23 16 23 N 0.03 0.53 4.45 -46.28 -0.21 0.32 16 24 O -0.16 -3.61 18.43 18.88 0.35 -3.27 16 25 O -0.18 -4.09 18.43 18.89 0.35 -3.75 16 26 C -0.06 -0.84 9.53 22.23 0.21 -0.63 16 27 C -0.06 -0.78 9.47 22.58 0.21 -0.56 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.09 2.78 7.54 -2.39 -0.02 2.76 16 30 H 0.09 2.56 7.85 -2.39 -0.02 2.54 16 31 H 0.28 14.06 8.30 -92.70 -0.77 13.29 16 32 H 0.14 3.22 8.09 -2.40 -0.02 3.20 16 33 H 0.14 3.21 8.09 -2.39 -0.02 3.19 16 34 H 0.17 1.63 7.65 -2.91 -0.02 1.61 16 35 H 0.18 1.50 7.59 -2.91 -0.02 1.47 16 36 H 0.17 1.96 7.60 -2.91 -0.02 1.94 16 37 H 0.18 1.84 7.05 -2.91 -0.02 1.82 16 Total: -1.00 -75.01 354.82 5.71 -69.29 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.15 Total: 13.67 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 6.01 Total: 5.31 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -2.95 Total: -108.56 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.65 Total: -17.81 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -1.18 Total: -0.36 kcal Total: -75.01 5.71 -69.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357052488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.952 kcal (2) G-P(sol) polarization free energy of solvation -75.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds