Wall clock time and date at job start Wed Apr 1 2020 04:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99647 * 2 1 4 4 C 1.50704 * 109.47124 * 275.59514 * 3 2 1 5 5 H 1.07997 * 119.99823 * 4.72776 * 4 3 2 6 6 C 1.37875 * 119.99925 * 184.73303 * 4 3 2 7 7 N 1.31516 * 119.99982 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99806 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47067 * 89.99493 * 8 6 4 10 10 H 1.48493 * 109.47217 * 209.99505 * 8 6 4 11 11 H 1.48500 * 109.47093 * 329.99896 * 8 6 4 12 12 S 1.65600 * 120.00532 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40203 * 159.67108 * 12 2 1 14 14 O 1.42097 * 106.39993 * 26.75188 * 12 2 1 15 15 N 1.65597 * 107.21974 * 273.21262 * 12 2 1 16 16 C 1.46503 * 119.99705 * 62.83048 * 15 12 2 17 17 C 1.50706 * 109.46927 * 163.97866 * 16 15 12 18 18 O 1.21293 * 119.99768 * 359.97438 * 17 16 15 19 19 C 1.46793 * 120.00030 * 180.02562 * 17 16 15 20 20 C 1.40205 * 120.21863 * 179.97438 * 19 17 16 21 21 F 1.35101 * 120.11677 * 359.69816 * 20 19 17 22 22 C 1.38160 * 119.77204 * 179.97438 * 20 19 17 23 23 C 1.38341 * 120.22061 * 0.02720 * 22 20 19 24 24 C 1.38332 * 120.45362 * 359.94838 * 23 22 20 25 25 C 1.38156 * 120.21948 * 0.04929 * 24 23 22 26 26 F 1.35107 * 120.11418 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.47627 * 270.00101 * 1 2 3 28 28 H 1.08996 * 109.47418 * 30.00763 * 1 2 3 29 29 H 1.09005 * 109.46443 * 150.00321 * 1 2 3 30 30 H 1.09001 * 109.47201 * 35.59501 * 3 2 1 31 31 H 1.09001 * 109.47105 * 155.59887 * 3 2 1 32 32 H 0.97001 * 119.99477 * 179.97438 * 7 6 4 33 33 H 0.96996 * 120.00031 * 242.82993 * 15 12 2 34 34 H 1.08995 * 109.47120 * 43.97788 * 16 15 12 35 35 H 1.09003 * 109.46986 * 283.96920 * 16 15 12 36 36 H 1.08001 * 119.89118 * 179.97438 * 22 20 19 37 37 H 1.08003 * 119.77341 * 179.97438 * 23 22 20 38 38 H 1.07996 * 119.89801 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3286 1.7731 -1.4141 5 1 1.8435 1.2462 -2.2224 6 6 3.0679 2.9071 -1.6758 7 7 3.6582 3.5489 -0.6913 8 14 3.2299 3.5326 -3.4285 9 1 2.1279 4.4850 -3.7180 10 1 4.5351 4.2221 -3.5893 11 1 3.1552 2.3879 -4.3715 12 16 2.2931 -1.4341 0.0006 13 8 3.6007 -1.1425 -0.4731 14 8 1.4396 -2.3905 -0.6125 15 7 2.4615 -1.9022 1.5801 16 6 1.2749 -2.1984 2.3867 17 6 1.6838 -2.9615 3.6203 18 8 2.8514 -3.2318 3.8070 19 6 0.6689 -3.3787 4.5953 20 6 1.0441 -4.0893 5.7443 21 9 2.3420 -4.3988 5.9562 22 6 0.0813 -4.4770 6.6561 23 6 -1.2491 -4.1667 6.4383 24 6 -1.6296 -3.4655 5.3081 25 6 -0.6821 -3.0688 4.3842 26 9 -1.0562 -2.3845 3.2809 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3632 -0.8901 -0.5138 30 1 1.6553 2.0013 0.5982 31 1 3.1896 1.1156 0.4246 32 1 4.1786 4.3465 -0.8755 33 1 3.3457 -1.9803 1.9712 34 1 0.5787 -2.7994 1.8018 35 1 0.7927 -1.2658 2.6798 36 1 0.3682 -5.0248 7.5416 37 1 -1.9958 -4.4736 7.1557 38 1 -2.6707 -3.2278 5.1472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425194247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:26 Heat of formation + Delta-G solvation = -160.887568 kcal Electronic energy + Delta-G solvation = -28640.253633 eV Core-core repulsion = 24053.568735 eV Total energy + Delta-G solvation = -4586.684898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.68991 -49.42966 -40.13409 -38.71549 -36.61470 -35.50812 -35.15818 -34.60750 -32.41969 -32.16435 -30.97688 -27.82759 -27.70018 -25.07213 -24.23811 -23.26355 -22.28540 -20.87638 -19.13229 -18.63741 -17.94990 -17.55524 -16.94774 -16.72582 -16.61218 -16.43822 -16.14650 -15.87697 -15.80081 -15.27580 -15.14261 -15.06609 -15.00318 -14.37842 -13.97175 -13.53883 -13.29036 -13.20105 -13.08270 -12.52738 -12.48853 -12.34345 -12.25884 -12.14326 -11.66389 -11.58962 -11.40727 -11.14464 -11.05625 -10.68796 -10.50415 -10.20663 -10.02834 -9.75834 -9.73269 -9.45881 -9.36265 -8.42932 -8.07464 -6.04689 -4.08927 -0.15797 0.37550 1.18952 1.83005 2.83418 3.14229 3.28779 3.33026 3.39564 3.45319 3.56651 3.73904 3.98077 4.07077 4.12697 4.45903 4.46449 4.64115 4.96820 5.03851 5.10357 5.13756 5.18802 5.29696 5.30699 5.33664 5.49812 5.61907 5.80286 5.97801 6.06648 6.27977 6.55736 7.02607 7.09781 7.27671 7.41684 7.62940 7.92648 8.21817 8.93557 9.56390 11.04029 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.002810 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.597298 B = 9961.565973 C =10309.811660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.995 5.995 3 C 0.255 3.745 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.783 3.217 13 O -0.957 6.957 14 O -0.996 6.996 15 N -1.130 6.130 16 C 0.080 3.920 17 C 0.393 3.607 18 O -0.423 6.423 19 C -0.242 4.242 20 C 0.189 3.811 21 F -0.107 7.107 22 C -0.180 4.180 23 C -0.028 4.028 24 C -0.176 4.176 25 C 0.178 3.822 26 F -0.113 7.113 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.420 0.580 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.853 -15.345 18.157 27.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.838 5.838 3 C 0.133 3.867 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.790 3.210 13 O -0.941 6.941 14 O -0.980 6.980 15 N -0.890 5.890 16 C -0.048 4.048 17 C 0.268 3.732 18 O -0.296 6.296 19 C -0.245 4.245 20 C 0.169 3.831 21 F -0.085 7.085 22 C -0.199 4.199 23 C -0.047 4.047 24 C -0.194 4.194 25 C 0.158 3.842 26 F -0.091 7.091 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.255 0.745 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.919 -15.763 17.407 26.803 hybrid contribution 0.424 0.771 -0.507 1.015 sum -12.495 -14.993 16.900 25.817 Atomic orbital electron populations 1.21410 0.80195 1.03698 1.00194 1.57622 1.14305 1.23298 1.88582 1.19101 0.91299 0.78538 0.97729 1.21493 1.31829 1.10320 0.93412 0.92092 1.24943 0.94996 0.96561 0.97522 1.69922 1.33152 1.18918 1.31353 0.86500 0.77443 0.78903 0.84627 1.20615 1.21048 1.19701 1.01963 0.73514 0.72979 0.72518 1.93655 1.38473 1.84484 1.77479 1.93521 1.69069 1.61191 1.74173 1.56247 1.13751 1.85785 1.33259 1.21696 0.89486 1.01196 0.92392 1.22168 0.88017 0.77307 0.85737 1.90602 1.19689 1.45164 1.74174 1.20559 0.94619 1.09586 0.99773 1.17600 0.79332 0.93630 0.92552 1.91640 1.33060 1.89714 1.94059 1.21262 0.92662 1.04933 1.01014 1.21122 0.95394 0.92593 0.95550 1.21241 1.00522 1.02715 0.94965 1.17595 0.91049 0.91593 0.83941 1.91604 1.91552 1.76018 1.49902 0.94271 0.90217 0.91500 0.94902 0.93874 0.92667 0.74455 0.86693 0.87740 0.83198 0.83170 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.69 59.84 0.64 2.16 16 2 N -0.99 -20.67 3.23 -123.05 -0.40 -21.07 16 3 C 0.26 6.45 5.10 -5.19 -0.03 6.42 16 4 C -0.53 -15.04 9.38 -34.44 -0.32 -15.36 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 S 2.78 57.04 6.09 -107.50 -0.65 56.38 16 13 O -0.96 -23.78 16.99 -57.17 -0.97 -24.75 16 14 O -1.00 -20.99 16.34 -57.17 -0.93 -21.92 16 15 N -1.13 -18.59 5.98 -11.65 -0.07 -18.66 16 16 C 0.08 1.06 4.93 -5.19 -0.03 1.03 16 17 C 0.39 5.11 7.17 -30.85 -0.22 4.88 16 18 O -0.42 -6.65 14.73 5.55 0.08 -6.56 16 19 C -0.24 -2.44 5.88 -104.96 -0.62 -3.05 16 20 C 0.19 1.74 7.29 -38.87 -0.28 1.46 16 21 F -0.11 -1.24 15.55 2.25 0.04 -1.20 16 22 C -0.18 -0.98 10.01 -39.57 -0.40 -1.38 16 23 C -0.03 -0.10 10.03 -39.51 -0.40 -0.50 16 24 C -0.18 -0.85 10.01 -39.58 -0.40 -1.25 16 25 C 0.18 1.40 7.26 -38.87 -0.28 1.12 16 26 F -0.11 -0.96 13.77 2.25 0.03 -0.93 16 27 H 0.04 0.51 8.07 -51.93 -0.42 0.10 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.07 1.04 7.05 -51.93 -0.37 0.67 16 30 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.42 6.80 7.72 -34.47 -0.27 6.53 16 34 H 0.12 1.40 7.05 -51.93 -0.37 1.03 16 35 H 0.11 1.19 7.34 -51.93 -0.38 0.81 16 36 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.15 0.05 8.06 -52.48 -0.42 -0.38 16 38 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -36.55 351.22 -8.14 -44.69 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -3.84 Total: 0.18 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.42 Total: -2.77 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: 0.27 Total: -65.43 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -1.82 Total: -53.24 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.07 Total: -2.14 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 57.04 SS G_CDS: -0.65 Total: 56.38 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.55 -8.14 -44.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425194247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.201 kcal (2) G-P(sol) polarization free energy of solvation -36.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds