Wall clock time and date at job start Wed Apr 1 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 119.99647 * 2 1 4 4 C 1.50704 * 109.47124 * 275.59514 * 3 2 1 5 5 H 1.07997 * 119.99823 * 4.72776 * 4 3 2 6 6 C 1.37875 * 119.99925 * 184.73303 * 4 3 2 7 7 N 1.31516 * 119.99982 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99806 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47067 * 89.99493 * 8 6 4 10 10 H 1.48493 * 109.47217 * 209.99505 * 8 6 4 11 11 H 1.48500 * 109.47093 * 329.99896 * 8 6 4 12 12 S 1.65600 * 120.00532 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40203 * 159.67108 * 12 2 1 14 14 O 1.42097 * 106.39993 * 26.75188 * 12 2 1 15 15 N 1.65597 * 107.21974 * 273.21262 * 12 2 1 16 16 C 1.46503 * 119.99705 * 62.83048 * 15 12 2 17 17 C 1.50706 * 109.46927 * 163.97866 * 16 15 12 18 18 O 1.21293 * 119.99768 * 359.97438 * 17 16 15 19 19 C 1.46793 * 120.00030 * 180.02562 * 17 16 15 20 20 C 1.40205 * 120.21863 * 179.97438 * 19 17 16 21 21 F 1.35101 * 120.11677 * 359.69816 * 20 19 17 22 22 C 1.38160 * 119.77204 * 179.97438 * 20 19 17 23 23 C 1.38341 * 120.22061 * 0.02720 * 22 20 19 24 24 C 1.38332 * 120.45362 * 359.94838 * 23 22 20 25 25 C 1.38156 * 120.21948 * 0.04929 * 24 23 22 26 26 F 1.35107 * 120.11418 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.47627 * 270.00101 * 1 2 3 28 28 H 1.08996 * 109.47418 * 30.00763 * 1 2 3 29 29 H 1.09005 * 109.46443 * 150.00321 * 1 2 3 30 30 H 1.09001 * 109.47201 * 35.59501 * 3 2 1 31 31 H 1.09001 * 109.47105 * 155.59887 * 3 2 1 32 32 H 0.97001 * 119.99477 * 179.97438 * 7 6 4 33 33 H 0.96996 * 120.00031 * 242.82993 * 15 12 2 34 34 H 1.08995 * 109.47120 * 43.97788 * 16 15 12 35 35 H 1.09003 * 109.46986 * 283.96920 * 16 15 12 36 36 H 1.08001 * 119.89118 * 179.97438 * 22 20 19 37 37 H 1.08003 * 119.77341 * 179.97438 * 23 22 20 38 38 H 1.07996 * 119.89801 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3286 1.7731 -1.4141 5 1 1.8435 1.2462 -2.2224 6 6 3.0679 2.9071 -1.6758 7 7 3.6582 3.5489 -0.6913 8 14 3.2299 3.5326 -3.4285 9 1 2.1279 4.4850 -3.7180 10 1 4.5351 4.2221 -3.5893 11 1 3.1552 2.3879 -4.3715 12 16 2.2931 -1.4341 0.0006 13 8 3.6007 -1.1425 -0.4731 14 8 1.4396 -2.3905 -0.6125 15 7 2.4615 -1.9022 1.5801 16 6 1.2749 -2.1984 2.3867 17 6 1.6838 -2.9615 3.6203 18 8 2.8514 -3.2318 3.8070 19 6 0.6689 -3.3787 4.5953 20 6 1.0441 -4.0893 5.7443 21 9 2.3420 -4.3988 5.9562 22 6 0.0813 -4.4770 6.6561 23 6 -1.2491 -4.1667 6.4383 24 6 -1.6296 -3.4655 5.3081 25 6 -0.6821 -3.0688 4.3842 26 9 -1.0562 -2.3845 3.2809 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3632 -0.8901 -0.5138 30 1 1.6553 2.0013 0.5982 31 1 3.1896 1.1156 0.4246 32 1 4.1786 4.3465 -0.8755 33 1 3.3457 -1.9803 1.9712 34 1 0.5787 -2.7994 1.8018 35 1 0.7927 -1.2658 2.6798 36 1 0.3682 -5.0248 7.5416 37 1 -1.9958 -4.4736 7.1557 38 1 -2.6707 -3.2278 5.1472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425194247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:25 Heat of formation + Delta-G solvation = -188.522648 kcal Electronic energy + Delta-G solvation = -28641.451980 eV Core-core repulsion = 24053.568735 eV Total energy + Delta-G solvation = -4587.883245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.27913 -50.14609 -41.02765 -39.33814 -38.37096 -37.26122 -36.93586 -35.89275 -34.51470 -32.80852 -31.45086 -29.67742 -28.78202 -26.79173 -24.91146 -24.24393 -23.80336 -21.74209 -20.57666 -19.32995 -19.06111 -18.79770 -18.51080 -18.27230 -17.60192 -17.42848 -17.31274 -16.83216 -16.69631 -16.50701 -16.23614 -16.11960 -15.75245 -15.72126 -15.22766 -14.95364 -14.83166 -14.29207 -14.10604 -13.87875 -13.74479 -13.39432 -13.28159 -13.22122 -13.04343 -13.02491 -12.97606 -12.94454 -12.84484 -12.48485 -12.39155 -12.00230 -11.76652 -11.21362 -10.77226 -10.59207 -10.28595 -9.86918 -9.82556 -8.21338 -6.33582 -0.78701 -0.44775 -0.10048 1.02805 1.38400 1.41473 1.51773 1.89544 2.32087 2.38916 2.50737 2.53233 2.63330 3.09971 3.21524 3.39890 3.41194 3.65069 3.83892 4.03066 4.07600 4.12034 4.16221 4.44819 4.59760 4.68558 4.74411 4.82715 4.89294 4.97891 5.09067 5.12433 5.18748 5.40895 5.62720 5.68235 5.75642 5.96351 6.08782 6.10572 6.75203 7.35567 8.86579 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.002810 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.597298 B = 9961.565973 C =10309.811660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.999 5.999 3 C 0.269 3.731 4 C -0.551 4.551 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.925 5.925 8 Si 0.959 3.041 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.274 1.274 12 S 2.801 3.199 13 O -1.007 7.007 14 O -1.002 7.002 15 N -1.123 6.123 16 C 0.069 3.931 17 C 0.394 3.606 18 O -0.466 6.466 19 C -0.268 4.268 20 C 0.160 3.840 21 F -0.131 7.131 22 C -0.170 4.170 23 C -0.005 4.005 24 C -0.162 4.162 25 C 0.168 3.832 26 F -0.120 7.120 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.016 0.984 32 H 0.267 0.733 33 H 0.421 0.579 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.175 0.825 37 H 0.198 0.802 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.179 -16.012 19.561 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.842 5.842 3 C 0.146 3.854 4 C -0.591 4.591 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.783 3.217 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.199 1.199 12 S 2.809 3.191 13 O -0.991 6.991 14 O -0.986 6.986 15 N -0.887 5.887 16 C -0.057 4.057 17 C 0.272 3.728 18 O -0.342 6.342 19 C -0.271 4.271 20 C 0.140 3.860 21 F -0.109 7.109 22 C -0.188 4.188 23 C -0.023 4.023 24 C -0.181 4.181 25 C 0.148 3.852 26 F -0.098 7.098 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.257 0.743 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.192 0.808 37 H 0.215 0.785 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -16.299 -16.438 18.810 29.827 hybrid contribution 1.301 0.884 -0.805 1.767 sum -14.998 -15.554 18.004 28.125 Atomic orbital electron populations 1.21716 0.77561 1.04078 1.02938 1.57457 1.16042 1.21601 1.89084 1.18671 0.90518 0.80115 0.96134 1.21854 1.31943 1.10613 0.94652 0.92606 1.25793 0.94690 0.96858 1.01607 1.70020 1.33746 1.19404 1.33292 0.85546 0.78029 0.78458 0.79625 1.18728 1.20567 1.19866 1.01156 0.72228 0.72723 0.72986 1.93582 1.41134 1.85176 1.79238 1.93503 1.68924 1.61146 1.74986 1.55854 1.15056 1.85365 1.32378 1.22084 0.88298 1.02692 0.92625 1.22407 0.88202 0.76301 0.85921 1.90583 1.21309 1.47147 1.75161 1.20395 0.94861 1.11906 0.99969 1.18052 0.79198 0.95122 0.93663 1.91575 1.34932 1.90164 1.94268 1.21646 0.92678 1.03883 1.00603 1.21715 0.95264 0.89956 0.95319 1.21694 1.01273 1.01114 0.93980 1.17820 0.90687 0.92149 0.84562 1.91574 1.91439 1.76294 1.50485 0.90360 0.90631 0.90320 0.94950 0.96644 0.92370 0.74319 0.85382 0.85690 0.80775 0.78501 0.79835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.60 10.69 127.77 1.37 3.97 16 2 N -1.00 -41.68 3.23 -543.22 -1.75 -43.44 16 3 C 0.27 13.92 5.10 85.63 0.44 14.35 16 4 C -0.55 -31.69 9.38 25.60 0.24 -31.45 16 5 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 6 C 0.01 0.58 5.46 84.65 0.46 1.04 16 7 N -0.92 -55.43 13.29 21.45 0.28 -55.14 16 8 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 9 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 12 S 2.80 117.06 6.09 -56.49 -0.34 116.72 16 13 O -1.01 -52.15 16.99 -128.00 -2.17 -54.32 16 14 O -1.00 -42.11 16.34 -128.00 -2.09 -44.20 16 15 N -1.12 -38.01 5.98 -190.78 -1.14 -39.15 16 16 C 0.07 1.83 4.93 85.63 0.42 2.25 16 17 C 0.39 10.56 7.17 27.93 0.20 10.76 16 18 O -0.47 -15.57 14.73 -3.07 -0.05 -15.62 16 19 C -0.27 -5.28 5.88 -20.08 -0.12 -5.40 16 20 C 0.16 2.85 7.29 22.73 0.17 3.01 16 21 F -0.13 -3.19 15.55 44.97 0.70 -2.49 16 22 C -0.17 -1.32 10.01 22.28 0.22 -1.10 16 23 C -0.01 -0.01 10.03 22.32 0.22 0.21 16 24 C -0.16 -0.87 10.01 22.27 0.22 -0.64 16 25 C 0.17 2.28 7.26 22.73 0.17 2.44 16 26 F -0.12 -1.80 13.77 44.97 0.62 -1.18 16 27 H 0.08 1.86 8.07 -2.39 -0.02 1.84 16 28 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 29 H 0.08 2.31 7.05 -2.38 -0.02 2.30 16 30 H 0.03 1.66 8.11 -2.39 -0.02 1.64 16 31 H 0.02 0.88 7.50 -2.39 -0.02 0.86 16 32 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.42 14.42 7.72 -96.75 -0.75 13.68 16 34 H 0.13 3.02 7.05 -2.39 -0.02 3.00 16 35 H 0.13 2.75 7.34 -2.39 -0.02 2.73 16 36 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 37 H 0.20 -1.31 8.06 -2.91 -0.02 -1.33 16 38 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 Total: -1.00 -82.90 351.22 0.48 -82.43 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.38 Total: 9.60 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 4.01 Total: -0.55 kcal Atomic # 7 Polarization: -135.12 SS G_CDS: -2.61 Total: -137.73 kcal Atomic # 8 Polarization: -109.84 SS G_CDS: -4.31 Total: -114.15 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 1.32 Total: -3.67 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 117.06 SS G_CDS: -0.34 Total: 116.72 kcal Total: -82.90 0.48 -82.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425194247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.096 kcal (2) G-P(sol) polarization free energy of solvation -82.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds