Wall clock time and date at job start Wed Apr 1 2020 05:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99563 * 2 1 4 4 H 1.48495 * 109.47243 * 270.00348 * 3 2 1 5 5 H 1.48498 * 109.47171 * 30.00749 * 3 2 1 6 6 H 1.48507 * 109.46862 * 150.00003 * 3 2 1 7 7 C 1.37870 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00115 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99756 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46768 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99750 * 180.02562 * 10 9 7 12 12 O 1.21362 * 119.99829 * 359.97438 * 11 10 9 13 13 C 1.49296 * 119.99665 * 179.97438 * 11 10 9 14 14 O 1.21394 * 120.00443 * 359.97438 * 13 11 10 15 15 N 1.34782 * 119.99665 * 179.97438 * 13 11 10 16 16 C 1.39161 * 119.99909 * 180.02562 * 15 13 11 17 17 C 1.36220 * 126.28876 * 359.95419 * 16 15 13 18 18 C 1.39721 * 107.87228 * 180.02562 * 17 16 15 19 19 N 1.30895 * 108.51001 * 359.71554 * 18 17 16 20 20 N 1.36155 * 126.29193 * 179.97438 * 16 15 13 21 21 C 1.40146 * 126.11413 * 359.96038 * 20 16 15 22 22 C 1.38885 * 120.05568 * 145.00511 * 21 20 16 23 23 C 1.38101 * 119.95330 * 180.02562 * 22 21 20 24 24 C 1.38287 * 120.08486 * 359.97288 * 23 22 21 25 25 C 1.38381 * 120.11804 * 0.04597 * 24 23 22 26 26 Cl 1.73602 * 119.97574 * 179.97438 * 25 24 23 27 27 C 1.38249 * 120.04541 * 359.95650 * 25 24 23 28 28 H 0.96998 * 120.00202 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47156 * 60.00641 * 9 7 2 30 30 H 1.08997 * 109.47362 * 299.99683 * 9 7 2 31 31 H 0.96994 * 120.00334 * 359.97438 * 10 9 7 32 32 H 0.96994 * 119.99915 * 359.97438 * 15 13 11 33 33 H 1.08001 * 126.06407 * 0.05662 * 17 16 15 34 34 H 1.08007 * 125.74315 * 179.97438 * 18 17 16 35 35 H 1.07993 * 120.02108 * 359.73985 * 22 21 20 36 36 H 1.08001 * 119.95846 * 180.02562 * 23 22 21 37 37 H 1.07993 * 119.93814 * 180.02562 * 24 23 22 38 38 H 1.07996 * 120.04212 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0022 11 6 5.3251 -2.8213 -0.0024 12 8 6.1137 -1.8988 -0.0021 13 6 5.8228 -4.2289 -0.0029 14 8 5.0340 -5.1516 -0.0028 15 7 7.1479 -4.4751 -0.0036 16 6 7.6118 -5.7871 -0.0047 17 6 6.8454 -6.9133 -0.0043 18 6 7.7035 -8.0159 -0.0051 19 7 8.9383 -7.5816 -0.0121 20 7 8.9152 -6.1811 -0.0059 21 6 10.0334 -5.3363 -0.0072 22 6 11.1827 -5.7027 0.6811 23 6 12.2832 -4.8685 0.6789 24 6 12.2425 -3.6691 -0.0082 25 6 11.0989 -3.3006 -0.6948 26 17 11.0516 -1.7938 -1.5555 27 6 9.9943 -4.1318 -0.6959 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6803 0.8889 30 1 3.8746 -0.6799 -0.8911 31 1 3.3697 -3.3124 -0.0021 32 1 7.7782 -3.7378 -0.0041 33 1 5.7660 -6.9477 -0.0039 34 1 7.3992 -9.0522 -0.0046 35 1 11.2141 -6.6372 1.2215 36 1 13.1772 -5.1535 1.2138 37 1 13.1046 -3.0187 -0.0087 38 1 9.1019 -3.8444 -1.2321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427877636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:25 Heat of formation + Delta-G solvation = 50.306781 kcal Electronic energy + Delta-G solvation = -26759.820315 eV Core-core repulsion = 22630.938971 eV Total energy + Delta-G solvation = -4128.881344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.17553 -40.43568 -39.56983 -38.35298 -36.91802 -35.68611 -34.50597 -33.73727 -32.47801 -31.39957 -29.83385 -29.31981 -28.41696 -25.21827 -23.87535 -23.66861 -22.28742 -21.43906 -20.90460 -20.01736 -19.30797 -18.18815 -17.15034 -16.96390 -16.44591 -16.38885 -15.93658 -15.69835 -15.31313 -15.17034 -14.88787 -14.43998 -14.34347 -14.14531 -13.98851 -13.79508 -13.46701 -13.27233 -12.51929 -12.43622 -12.38585 -12.18109 -12.03739 -11.59237 -11.42995 -11.35490 -11.18098 -10.92924 -10.88237 -10.41814 -10.08844 -9.63002 -9.50380 -9.42390 -8.93109 -8.75707 -8.53006 -8.44590 -6.30176 -4.34758 0.29912 0.55078 1.14918 1.44997 1.71575 1.88148 2.47204 2.59565 3.00761 3.19288 3.26884 3.31682 3.34530 3.64520 4.10478 4.23676 4.32682 4.43974 4.47770 4.67404 4.71813 4.91250 4.92242 5.03935 5.10915 5.24959 5.48672 5.54282 5.68163 5.73124 5.82258 5.99904 6.41470 6.50623 6.58042 6.70072 6.83347 6.83582 7.15997 7.32845 7.43710 7.84788 8.25436 8.32138 8.68980 9.26686 10.81432 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.002869 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.522580 B = 9758.639229 C =11925.239843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.081 3.919 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.550 4.550 8 H 0.084 0.916 9 C 0.218 3.782 10 N -0.658 5.658 11 C 0.498 3.502 12 O -0.533 6.533 13 C 0.516 3.484 14 O -0.480 6.480 15 N -0.632 5.632 16 C 0.312 3.688 17 C -0.267 4.267 18 C 0.075 3.925 19 N -0.283 5.283 20 N -0.346 5.346 21 C 0.173 3.827 22 C -0.107 4.107 23 C -0.082 4.082 24 C -0.115 4.115 25 C -0.007 4.007 26 Cl -0.049 7.049 27 C -0.142 4.142 28 H 0.270 0.730 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.412 0.588 32 H 0.423 0.577 33 H 0.183 0.817 34 H 0.196 0.804 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.694 -11.816 0.381 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.588 4.588 8 H 0.102 0.898 9 C 0.097 3.903 10 N -0.308 5.308 11 C 0.276 3.724 12 O -0.411 6.411 13 C 0.299 3.701 14 O -0.350 6.350 15 N -0.283 5.283 16 C 0.095 3.905 17 C -0.297 4.297 18 C -0.112 4.112 19 N -0.102 5.102 20 N -0.128 5.128 21 C 0.081 3.919 22 C -0.127 4.127 23 C -0.101 4.101 24 C -0.135 4.135 25 C -0.034 4.034 26 Cl -0.020 7.020 27 C -0.164 4.164 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.248 0.752 32 H 0.263 0.737 33 H 0.200 0.800 34 H 0.213 0.787 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 25.628 -11.752 0.301 28.195 hybrid contribution -0.528 1.268 -0.153 1.382 sum 25.100 -10.484 0.149 27.201 Atomic orbital electron populations 1.69869 1.06204 1.27612 1.48630 1.24769 0.94811 0.99104 0.93707 0.86840 0.80552 0.83277 0.79156 1.19698 1.20707 1.18476 1.21024 0.87972 0.95609 1.54185 0.89814 1.19770 0.95940 0.77025 0.97614 1.46121 1.04544 1.12582 1.67510 1.19415 0.84912 0.87201 0.80859 1.90761 1.55252 1.44691 1.50442 1.20816 0.81199 0.91480 0.76650 1.90703 1.54596 1.45378 1.44312 1.42877 1.08847 1.05241 1.71294 1.18225 0.84459 0.86176 1.01600 1.21829 1.02322 0.88369 1.17221 1.23994 0.89548 1.00640 0.96991 1.77602 1.21518 0.84305 1.26758 1.45947 1.01395 1.04995 1.60463 1.17256 0.86886 0.89572 0.98232 1.21108 0.91801 1.01250 0.98548 1.21078 0.98291 0.92870 0.97872 1.21202 0.97270 0.97635 0.97351 1.20613 0.95075 0.89447 0.98294 1.98424 1.98556 1.29840 1.75147 1.20872 0.99760 0.94360 1.01368 0.92050 0.94714 0.95167 0.75204 0.73681 0.80017 0.78729 0.83958 0.83789 0.83999 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 20.41 27.47 -169.99 -4.67 15.74 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.55 -14.52 9.83 -34.44 -0.34 -14.86 16 8 H 0.08 2.33 7.84 -52.48 -0.41 1.92 16 9 C 0.22 5.02 4.50 -5.19 -0.02 4.99 16 10 N -0.66 -12.89 5.54 -61.96 -0.34 -13.24 16 11 C 0.50 8.98 7.88 -11.66 -0.09 8.89 16 12 O -0.53 -10.50 16.47 5.49 0.09 -10.41 16 13 C 0.52 8.02 7.85 -11.66 -0.09 7.93 16 14 O -0.48 -7.77 13.60 5.46 0.07 -7.69 16 15 N -0.63 -8.58 5.00 -11.74 -0.06 -8.64 16 16 C 0.31 4.16 7.40 -152.62 -1.13 3.03 16 17 C -0.27 -3.38 9.65 -39.75 -0.38 -3.76 16 18 C 0.08 0.80 12.00 -17.40 -0.21 0.59 16 19 N -0.28 -3.42 12.33 30.60 0.38 -3.04 16 20 N -0.35 -4.29 3.76 -9.76 -0.04 -4.33 16 21 C 0.17 1.88 6.39 -83.61 -0.53 1.34 16 22 C -0.11 -0.92 9.77 -39.39 -0.38 -1.31 16 23 C -0.08 -0.53 10.04 -39.61 -0.40 -0.93 16 24 C -0.12 -0.82 9.83 -39.51 -0.39 -1.21 16 25 C -0.01 -0.06 6.32 -39.52 -0.25 -0.31 16 26 Cl -0.05 -0.48 28.95 -51.86 -1.50 -1.98 16 27 C -0.14 -1.49 8.23 -39.37 -0.32 -1.81 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.04 0.83 7.20 -51.93 -0.37 0.45 16 30 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 31 H 0.41 7.58 7.79 -40.82 -0.32 7.26 16 32 H 0.42 5.38 5.56 -40.82 -0.23 5.15 16 33 H 0.18 2.40 5.83 -52.49 -0.31 2.10 16 34 H 0.20 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.14 1.52 6.30 -52.49 -0.33 1.19 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -30.83 351.63 -7.86 -38.69 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -3.22 Total: 9.75 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -4.64 Total: 4.69 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.71 Total: -54.09 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.16 Total: -18.10 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.83 -7.86 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427877636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.998 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds