Wall clock time and date at job start Wed Apr 1 2020 05:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99563 * 2 1 4 4 H 1.48495 * 109.47243 * 270.00348 * 3 2 1 5 5 H 1.48498 * 109.47171 * 30.00749 * 3 2 1 6 6 H 1.48507 * 109.46862 * 150.00003 * 3 2 1 7 7 C 1.37870 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00115 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99756 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46768 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99750 * 180.02562 * 10 9 7 12 12 O 1.21362 * 119.99829 * 359.97438 * 11 10 9 13 13 C 1.49296 * 119.99665 * 179.97438 * 11 10 9 14 14 O 1.21394 * 120.00443 * 359.97438 * 13 11 10 15 15 N 1.34782 * 119.99665 * 179.97438 * 13 11 10 16 16 C 1.39161 * 119.99909 * 180.02562 * 15 13 11 17 17 C 1.36220 * 126.28876 * 359.95419 * 16 15 13 18 18 C 1.39721 * 107.87228 * 180.02562 * 17 16 15 19 19 N 1.30895 * 108.51001 * 359.71554 * 18 17 16 20 20 N 1.36155 * 126.29193 * 179.97438 * 16 15 13 21 21 C 1.40146 * 126.11413 * 359.96038 * 20 16 15 22 22 C 1.38885 * 120.05568 * 145.00511 * 21 20 16 23 23 C 1.38101 * 119.95330 * 180.02562 * 22 21 20 24 24 C 1.38287 * 120.08486 * 359.97288 * 23 22 21 25 25 C 1.38381 * 120.11804 * 0.04597 * 24 23 22 26 26 Cl 1.73602 * 119.97574 * 179.97438 * 25 24 23 27 27 C 1.38249 * 120.04541 * 359.95650 * 25 24 23 28 28 H 0.96998 * 120.00202 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47156 * 60.00641 * 9 7 2 30 30 H 1.08997 * 109.47362 * 299.99683 * 9 7 2 31 31 H 0.96994 * 120.00334 * 359.97438 * 10 9 7 32 32 H 0.96994 * 119.99915 * 359.97438 * 15 13 11 33 33 H 1.08001 * 126.06407 * 0.05662 * 17 16 15 34 34 H 1.08007 * 125.74315 * 179.97438 * 18 17 16 35 35 H 1.07993 * 120.02108 * 359.73985 * 22 21 20 36 36 H 1.08001 * 119.95846 * 180.02562 * 23 22 21 37 37 H 1.07993 * 119.93814 * 180.02562 * 24 23 22 38 38 H 1.07996 * 120.04212 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0022 11 6 5.3251 -2.8213 -0.0024 12 8 6.1137 -1.8988 -0.0021 13 6 5.8228 -4.2289 -0.0029 14 8 5.0340 -5.1516 -0.0028 15 7 7.1479 -4.4751 -0.0036 16 6 7.6118 -5.7871 -0.0047 17 6 6.8454 -6.9133 -0.0043 18 6 7.7035 -8.0159 -0.0051 19 7 8.9383 -7.5816 -0.0121 20 7 8.9152 -6.1811 -0.0059 21 6 10.0334 -5.3363 -0.0072 22 6 11.1827 -5.7027 0.6811 23 6 12.2832 -4.8685 0.6789 24 6 12.2425 -3.6691 -0.0082 25 6 11.0989 -3.3006 -0.6948 26 17 11.0516 -1.7938 -1.5555 27 6 9.9943 -4.1318 -0.6959 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6803 0.8889 30 1 3.8746 -0.6799 -0.8911 31 1 3.3697 -3.3124 -0.0021 32 1 7.7782 -3.7378 -0.0041 33 1 5.7660 -6.9477 -0.0039 34 1 7.3992 -9.0522 -0.0046 35 1 11.2141 -6.6372 1.2215 36 1 13.1772 -5.1535 1.2138 37 1 13.1046 -3.0187 -0.0087 38 1 9.1019 -3.8444 -1.2321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427877636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:25 Heat of formation + Delta-G solvation = 30.438101 kcal Electronic energy + Delta-G solvation = -26760.681886 eV Core-core repulsion = 22630.938971 eV Total energy + Delta-G solvation = -4129.742915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.14219 -41.70637 -40.29590 -39.75687 -37.63405 -36.98051 -36.05704 -34.59231 -34.40625 -32.06425 -30.88465 -30.30010 -30.01244 -26.63369 -24.74718 -24.44860 -23.82501 -22.46498 -22.02533 -21.31467 -20.37967 -19.44128 -18.63155 -17.95756 -17.75435 -17.51781 -16.99358 -16.84330 -16.65145 -16.18697 -16.10861 -15.77796 -15.38725 -15.13645 -15.04917 -14.78583 -14.60428 -14.46712 -14.25068 -14.13954 -13.18287 -13.06893 -12.94754 -12.84907 -12.71539 -12.66580 -12.47896 -12.08461 -11.93600 -11.90224 -11.70380 -11.16896 -10.94249 -10.93192 -10.25129 -10.11345 -9.60310 -9.39070 -8.39911 -6.49440 -0.49589 -0.10586 -0.01087 0.48488 0.82043 0.95792 1.36090 1.37600 1.44880 1.49342 1.65267 1.97317 2.28006 2.31754 2.39183 2.95215 3.20439 3.40887 3.56774 3.79007 3.83631 3.98006 4.08130 4.25053 4.35568 4.46668 4.52683 4.63340 4.84882 4.93222 4.94050 5.07433 5.08198 5.13551 5.20857 5.38796 5.46399 5.63364 5.76889 5.98096 6.24938 6.43290 6.44551 6.56710 6.79302 7.16691 8.74870 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.002869 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.522580 B = 9758.639229 C =11925.239843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.940 3.060 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.554 4.554 8 H 0.057 0.943 9 C 0.228 3.772 10 N -0.664 5.664 11 C 0.505 3.495 12 O -0.547 6.547 13 C 0.527 3.473 14 O -0.487 6.487 15 N -0.620 5.620 16 C 0.291 3.709 17 C -0.275 4.275 18 C 0.084 3.916 19 N -0.292 5.292 20 N -0.346 5.346 21 C 0.145 3.855 22 C -0.108 4.108 23 C -0.068 4.068 24 C -0.106 4.106 25 C -0.018 4.018 26 Cl -0.059 7.059 27 C -0.154 4.154 28 H 0.273 0.727 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.416 0.584 32 H 0.426 0.574 33 H 0.176 0.824 34 H 0.234 0.766 35 H 0.149 0.851 36 H 0.183 0.817 37 H 0.168 0.832 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.755 -12.204 0.902 30.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.174 1.174 7 C -0.592 4.592 8 H 0.075 0.925 9 C 0.106 3.894 10 N -0.314 5.314 11 C 0.284 3.716 12 O -0.426 6.426 13 C 0.308 3.692 14 O -0.359 6.359 15 N -0.270 5.270 16 C 0.074 3.926 17 C -0.306 4.306 18 C -0.103 4.103 19 N -0.112 5.112 20 N -0.128 5.128 21 C 0.053 3.947 22 C -0.128 4.128 23 C -0.086 4.086 24 C -0.125 4.125 25 C -0.045 4.045 26 Cl -0.030 7.030 27 C -0.176 4.176 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.253 0.747 32 H 0.267 0.733 33 H 0.193 0.807 34 H 0.250 0.750 35 H 0.166 0.834 36 H 0.200 0.800 37 H 0.186 0.814 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 28.740 -12.165 0.819 31.219 hybrid contribution -1.388 1.271 -0.308 1.907 sum 27.352 -10.894 0.512 29.446 Atomic orbital electron populations 1.69989 1.07925 1.28793 1.50193 1.25631 0.95559 1.02851 0.93328 0.85829 0.79506 0.78806 0.79625 1.18821 1.20097 1.17447 1.21236 0.89787 0.94736 1.53444 0.92485 1.19430 0.93704 0.78875 0.97384 1.45918 1.05465 1.11486 1.68507 1.19672 0.84048 0.88279 0.79596 1.90748 1.55487 1.45663 1.50693 1.20099 0.81887 0.89982 0.77245 1.90714 1.55004 1.45058 1.45100 1.42628 1.08000 1.05924 1.70476 1.18333 0.85445 0.85816 1.02985 1.21928 1.02302 0.89101 1.17227 1.24565 0.88431 1.01837 0.95466 1.77569 1.22329 0.84284 1.26981 1.46061 1.01335 1.05198 1.60187 1.17546 0.87373 0.89860 0.99877 1.21330 0.91601 1.01843 0.98039 1.21500 0.98658 0.91688 0.96747 1.21576 0.97075 0.98041 0.95820 1.20765 0.95654 0.89091 0.99009 1.98419 1.98602 1.30430 1.75502 1.20814 0.99908 0.94857 1.02024 0.91742 0.94959 0.95117 0.74664 0.73257 0.80736 0.74957 0.83355 0.79969 0.81405 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.74 13.96 21.45 0.30 -54.44 16 2 C 0.03 1.48 5.47 84.65 0.46 1.94 16 3 Si 0.94 41.83 27.47 68.60 1.88 43.72 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 7 C -0.55 -29.76 9.83 25.60 0.25 -29.51 16 8 H 0.06 3.29 7.84 -2.91 -0.02 3.26 16 9 C 0.23 10.51 4.50 85.63 0.38 10.89 16 10 N -0.66 -26.16 5.54 -468.29 -2.60 -28.75 16 11 C 0.50 18.16 7.88 87.22 0.69 18.85 16 12 O -0.55 -21.34 16.47 -3.29 -0.05 -21.40 16 13 C 0.53 16.36 7.85 87.22 0.68 17.04 16 14 O -0.49 -15.81 13.60 -3.38 -0.05 -15.86 16 15 N -0.62 -16.84 5.00 -309.39 -1.55 -18.38 16 16 C 0.29 7.66 7.40 131.17 0.97 8.63 16 17 C -0.27 -6.77 9.65 22.16 0.21 -6.56 16 18 C 0.08 1.63 12.00 85.19 1.02 2.65 16 19 N -0.29 -6.65 12.33 -57.09 -0.70 -7.36 16 20 N -0.35 -8.33 3.76 -184.79 -0.69 -9.02 16 21 C 0.15 3.02 6.39 38.10 0.24 3.26 16 22 C -0.11 -1.63 9.77 22.39 0.22 -1.41 16 23 C -0.07 -0.64 10.04 22.25 0.22 -0.41 16 24 C -0.11 -1.21 9.83 22.32 0.22 -0.99 16 25 C -0.02 -0.31 6.32 22.31 0.14 -0.17 16 26 Cl -0.06 -1.10 28.95 -2.72 -0.08 -1.17 16 27 C -0.15 -3.17 8.23 22.41 0.18 -2.99 16 28 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.03 1.51 7.20 -2.39 -0.02 1.50 16 30 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 31 H 0.42 15.63 7.79 -92.71 -0.72 14.91 16 32 H 0.43 10.94 5.56 -92.71 -0.52 10.42 16 33 H 0.18 4.56 5.83 -2.91 -0.02 4.55 16 34 H 0.23 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 37 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.13 2.82 6.30 -2.91 -0.02 2.80 16 Total: -1.00 -66.90 351.63 2.24 -64.66 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.13 Total: 26.79 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 5.91 Total: 21.23 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -5.24 Total: -117.96 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.10 Total: -37.25 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.72 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.17 kcal Total: -66.90 2.24 -64.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427877636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.098 kcal (2) G-P(sol) polarization free energy of solvation -66.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds