Wall clock time and date at job start Wed Apr 1 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99822 * 2 1 4 4 H 1.48504 * 109.47067 * 264.99517 * 3 2 1 5 5 H 1.48491 * 109.47232 * 25.00043 * 3 2 1 6 6 H 1.48502 * 109.46865 * 144.99940 * 3 2 1 7 7 C 1.37872 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00410 * 185.05946 * 7 2 1 9 9 C 1.50707 * 119.99958 * 5.05697 * 7 2 1 10 10 O 1.42906 * 110.88417 * 60.78224 * 9 7 2 11 11 C 1.55157 * 111.00343 * 296.90867 * 9 7 2 12 12 C 1.54326 * 102.94008 * 206.42042 * 11 9 7 13 13 N 1.47025 * 107.26874 * 22.19227 * 12 11 9 14 14 S 1.65605 * 125.64532 * 181.01254 * 13 12 11 15 15 O 1.42103 * 106.40304 * 203.56305 * 14 13 12 16 16 O 1.42097 * 106.40317 * 336.48447 * 14 13 12 17 17 C 1.76208 * 107.21710 * 90.02388 * 14 13 12 18 18 C 1.36107 * 120.12266 * 114.99845 * 17 14 13 19 19 C 1.39320 * 121.05972 * 180.02562 * 18 17 14 20 20 C 1.36170 * 120.87437 * 0.02562 * 19 18 17 21 21 C 1.40403 * 119.61173 * 359.97438 * 20 19 18 22 22 C 1.40773 * 121.38449 * 180.02562 * 21 20 19 23 23 C 1.36571 * 118.14955 * 179.97438 * 22 21 20 24 24 C 1.39338 * 119.94257 * 359.97438 * 23 22 21 25 25 N 1.31084 * 121.75036 * 0.02562 * 24 23 22 26 26 C 1.33694 * 121.31751 * 359.70966 * 25 24 23 27 27 C 1.47425 * 108.70676 * 1.05693 * 13 12 11 28 28 H 0.96998 * 119.99961 * 0.02562 * 1 2 3 29 29 H 0.96692 * 114.00035 * 290.74761 * 10 9 7 30 30 H 1.08992 * 110.72452 * 88.05567 * 11 9 7 31 31 H 1.09002 * 110.86914 * 324.84855 * 11 9 7 32 32 H 1.08999 * 109.88477 * 141.60378 * 12 11 9 33 33 H 1.08994 * 109.88261 * 262.77512 * 12 11 9 34 34 H 1.07996 * 119.46922 * 0.02562 * 18 17 14 35 35 H 1.08002 * 119.56294 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.19757 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.92587 * 359.97438 * 22 21 20 38 38 H 1.08006 * 120.03095 * 180.02562 * 23 22 21 39 39 H 1.07995 * 119.12669 * 180.02562 * 24 23 22 40 40 H 1.08995 * 110.36539 * 217.03628 * 27 13 12 41 41 H 1.09000 * 110.45693 * 94.75818 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9854 -1.3948 5 1 1.3978 2.6809 0.5917 6 1 3.4898 1.4730 0.8031 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0819 9 6 1.2555 -2.4966 -0.1162 10 8 0.5279 -2.5585 -1.3446 11 6 0.3138 -2.7063 1.0990 12 6 0.1935 -4.2427 1.1818 13 7 1.3660 -4.8097 0.4996 14 16 1.6802 -6.4235 0.3010 15 8 3.0847 -6.5394 0.1189 16 8 0.9714 -7.0999 1.3302 17 6 0.9390 -6.9158 -1.2200 18 6 1.7174 -7.3318 -2.2560 19 6 1.1521 -7.7249 -3.4672 20 6 -0.1973 -7.7030 -3.6483 21 6 -1.0310 -7.2795 -2.6010 22 6 -2.4306 -7.2428 -2.7472 23 6 -3.1785 -6.8201 -1.6855 24 6 -2.5517 -6.4413 -0.5002 25 7 -1.2481 -6.4767 -0.3673 26 6 -0.4587 -6.8853 -1.3660 27 6 2.2162 -3.7038 0.0226 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2206 -1.9480 -1.3895 30 1 -0.6600 -2.2526 0.9152 31 1 0.7592 -2.3048 2.0093 32 1 0.1833 -4.5581 2.2251 33 1 -0.7192 -4.5704 0.6844 34 1 2.7905 -7.3577 -2.1373 35 1 1.7927 -8.0512 -4.2732 36 1 -0.6238 -8.0097 -4.5919 37 1 -2.9000 -7.5405 -3.6733 38 1 -4.2550 -6.7804 -1.7643 39 1 -3.1559 -6.1096 0.3312 40 1 2.6551 -3.9523 -0.9436 41 1 2.9988 -3.4843 0.7489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592072467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:59 Heat of formation + Delta-G solvation = -53.596353 kcal Electronic energy + Delta-G solvation = -29500.556273 eV Core-core repulsion = 25472.753400 eV Total energy + Delta-G solvation = -4027.802872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.88019 -37.94331 -37.33133 -36.64382 -35.39348 -34.15141 -33.70715 -32.17727 -30.70059 -30.29245 -29.06949 -28.15410 -24.78206 -24.52348 -23.74985 -22.78803 -21.34317 -19.74603 -18.71268 -18.33843 -17.83320 -17.21766 -16.92963 -16.69974 -15.84633 -15.28320 -14.89553 -14.81828 -14.55641 -14.34865 -14.13270 -14.03499 -13.69826 -13.27013 -13.14354 -12.77514 -12.51924 -12.27082 -12.04414 -11.81630 -11.70262 -11.66005 -11.58493 -11.49904 -11.24061 -10.97833 -10.91414 -10.81800 -10.63609 -10.43820 -10.32466 -9.92868 -9.45616 -9.31298 -8.89709 -8.73190 -8.62476 -8.16855 -8.11755 -6.21942 -4.28706 0.00804 0.72911 0.87698 1.69238 2.71428 3.24044 3.30586 3.33528 3.44027 3.91136 4.14882 4.20930 4.31222 4.42179 4.52881 4.70604 4.72916 4.82965 4.99424 5.04938 5.17258 5.22519 5.45729 5.56294 5.72315 5.77381 5.83417 5.94423 5.99866 6.10884 6.14269 6.19671 6.30796 6.39036 6.52012 6.69698 6.75848 6.95284 7.08097 7.19979 7.41122 7.47581 7.79832 7.80663 8.13266 8.72846 9.35850 9.42653 10.85371 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.004216 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.479846 B = 6639.064073 C = 7210.817097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.251 3.749 10 O -0.581 6.581 11 C -0.132 4.132 12 C 0.123 3.877 13 N -0.993 5.993 14 S 2.715 3.285 15 O -0.969 6.969 16 O -0.947 6.947 17 C -0.653 4.653 18 C 0.016 3.984 19 C -0.146 4.146 20 C -0.043 4.043 21 C -0.124 4.124 22 C -0.048 4.048 23 C -0.181 4.181 24 C 0.155 3.845 25 N -0.473 5.473 26 C 0.210 3.790 27 C 0.135 3.865 28 H 0.266 0.734 29 H 0.375 0.625 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.063 0.937 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.044 -13.908 -6.128 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.209 3.791 10 O -0.389 6.389 11 C -0.172 4.172 12 C -0.002 4.002 13 N -0.833 5.833 14 S 2.804 3.196 15 O -0.960 6.960 16 O -0.937 6.937 17 C -0.738 4.738 18 C -0.005 4.005 19 C -0.164 4.164 20 C -0.062 4.062 21 C -0.127 4.127 22 C -0.074 4.074 23 C -0.201 4.201 24 C -0.017 4.017 25 N -0.181 5.181 26 C 0.087 3.913 27 C 0.011 3.989 28 H 0.076 0.924 29 H 0.224 0.776 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.167 0.833 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.182 0.818 40 H 0.081 0.919 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.782 -14.660 -4.949 16.195 hybrid contribution -0.913 1.265 -1.499 2.163 sum -5.694 -13.395 -6.448 15.920 Atomic orbital electron populations 1.69771 1.05955 1.27374 1.50174 1.24958 0.94952 0.99361 0.93575 0.86486 0.79805 0.82579 0.78366 1.20478 1.21244 1.19778 1.21462 0.94000 0.90510 1.51244 0.91789 1.19620 0.87578 0.90531 0.81326 1.86140 1.47923 1.65342 1.39447 1.23176 1.02471 0.90458 1.01048 1.21934 0.87069 0.96132 0.95046 1.58267 1.34021 1.21449 1.69558 1.01262 0.72815 0.71879 0.73634 1.93538 1.29347 1.86152 1.86944 1.93546 1.74489 1.72296 1.53415 1.31006 1.01778 1.16799 1.24203 1.20927 1.00667 0.88001 0.90940 1.21046 0.95435 1.02071 0.97880 1.21251 0.93767 0.93786 0.97356 1.18861 0.94604 1.03591 0.95601 1.21456 0.92035 0.94855 0.99055 1.21907 1.01717 1.01922 0.94588 1.23072 0.90363 0.91552 0.96698 1.68093 1.06288 1.13960 1.29737 1.17953 0.91747 0.92511 0.89096 1.22151 0.93015 0.85781 0.97988 0.92448 0.77598 0.89953 0.91589 0.92909 0.91293 0.83318 0.84545 0.84685 0.84296 0.84220 0.81776 0.91895 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.07 10.86 55.43 0.60 -22.47 16 2 C 0.07 1.91 5.32 -17.82 -0.09 1.82 16 3 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.53 -13.91 8.26 -34.44 -0.28 -14.19 16 8 H 0.06 1.65 7.79 -52.49 -0.41 1.25 16 9 C 0.25 6.04 0.86 -89.62 -0.08 5.97 16 10 O -0.58 -14.51 13.14 -35.23 -0.46 -14.97 16 11 C -0.13 -2.94 5.34 -24.89 -0.13 -3.08 16 12 C 0.12 2.48 6.87 -3.06 -0.02 2.46 16 13 N -0.99 -20.35 3.70 -111.42 -0.41 -20.77 16 14 S 2.72 52.62 5.54 -107.50 -0.60 52.02 16 15 O -0.97 -19.58 16.52 -57.17 -0.94 -20.52 16 16 O -0.95 -19.84 16.91 -57.17 -0.97 -20.81 16 17 C -0.65 -11.31 5.91 -39.47 -0.23 -11.55 16 18 C 0.02 0.23 9.47 -39.94 -0.38 -0.15 16 19 C -0.15 -1.66 9.95 -39.92 -0.40 -2.06 16 20 C -0.04 -0.47 9.78 -39.51 -0.39 -0.86 16 21 C -0.12 -1.68 5.74 -106.80 -0.61 -2.29 16 22 C -0.05 -0.50 9.90 -39.23 -0.39 -0.89 16 23 C -0.18 -1.84 10.03 -39.77 -0.40 -2.24 16 24 C 0.15 1.98 11.15 -17.46 -0.19 1.79 16 25 N -0.47 -7.95 7.00 -10.97 -0.08 -8.02 16 26 C 0.21 3.53 6.56 -84.86 -0.56 2.98 16 27 C 0.14 2.97 6.16 -2.53 -0.02 2.96 16 28 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.38 9.38 7.72 45.56 0.35 9.73 16 30 H 0.08 1.90 7.48 -51.93 -0.39 1.52 16 31 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.34 5.98 -51.93 -0.31 1.03 16 34 H 0.15 1.92 7.26 -52.49 -0.38 1.54 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -32.68 352.99 -10.80 -43.47 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.07 Total: 10.81 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -4.17 Total: -19.34 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.11 Total: -51.26 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -2.37 Total: -56.30 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 52.62 SS G_CDS: -0.60 Total: 52.02 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.68 -10.80 -43.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.123 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds