Wall clock time and date at job start Wed Apr 1 2020 05:38:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86804 * 119.99822 * 2 1
4 4 H 1.48504 * 109.47067 * 264.99517 * 3 2 1
5 5 H 1.48491 * 109.47232 * 25.00043 * 3 2 1
6 6 H 1.48502 * 109.46865 * 144.99940 * 3 2 1
7 7 C 1.37872 * 120.00251 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00410 * 185.05946 * 7 2 1
9 9 C 1.50707 * 119.99958 * 5.05697 * 7 2 1
10 10 O 1.42906 * 110.88417 * 60.78224 * 9 7 2
11 11 C 1.55157 * 111.00343 * 296.90867 * 9 7 2
12 12 C 1.54326 * 102.94008 * 206.42042 * 11 9 7
13 13 N 1.47025 * 107.26874 * 22.19227 * 12 11 9
14 14 S 1.65605 * 125.64532 * 181.01254 * 13 12 11
15 15 O 1.42103 * 106.40304 * 203.56305 * 14 13 12
16 16 O 1.42097 * 106.40317 * 336.48447 * 14 13 12
17 17 C 1.76208 * 107.21710 * 90.02388 * 14 13 12
18 18 C 1.36107 * 120.12266 * 114.99845 * 17 14 13
19 19 C 1.39320 * 121.05972 * 180.02562 * 18 17 14
20 20 C 1.36170 * 120.87437 * 0.02562 * 19 18 17
21 21 C 1.40403 * 119.61173 * 359.97438 * 20 19 18
22 22 C 1.40773 * 121.38449 * 180.02562 * 21 20 19
23 23 C 1.36571 * 118.14955 * 179.97438 * 22 21 20
24 24 C 1.39338 * 119.94257 * 359.97438 * 23 22 21
25 25 N 1.31084 * 121.75036 * 0.02562 * 24 23 22
26 26 C 1.33694 * 121.31751 * 359.70966 * 25 24 23
27 27 C 1.47425 * 108.70676 * 1.05693 * 13 12 11
28 28 H 0.96998 * 119.99961 * 0.02562 * 1 2 3
29 29 H 0.96692 * 114.00035 * 290.74761 * 10 9 7
30 30 H 1.08992 * 110.72452 * 88.05567 * 11 9 7
31 31 H 1.09002 * 110.86914 * 324.84855 * 11 9 7
32 32 H 1.08999 * 109.88477 * 141.60378 * 12 11 9
33 33 H 1.08994 * 109.88261 * 262.77512 * 12 11 9
34 34 H 1.07996 * 119.46922 * 0.02562 * 18 17 14
35 35 H 1.08002 * 119.56294 * 180.02562 * 19 18 17
36 36 H 1.08000 * 120.19757 * 179.97438 * 20 19 18
37 37 H 1.08003 * 120.92587 * 359.97438 * 22 21 20
38 38 H 1.08006 * 120.03095 * 180.02562 * 23 22 21
39 39 H 1.07995 * 119.12669 * 180.02562 * 24 23 22
40 40 H 1.08995 * 110.36539 * 217.03628 * 27 13 12
41 41 H 1.09000 * 110.45693 * 94.75818 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.6024 1.9854 -1.3948
5 1 1.3978 2.6809 0.5917
6 1 3.4898 1.4730 0.8031
7 6 2.0046 -1.1940 -0.0005
8 1 3.0814 -1.1959 0.0819
9 6 1.2555 -2.4966 -0.1162
10 8 0.5279 -2.5585 -1.3446
11 6 0.3138 -2.7063 1.0990
12 6 0.1935 -4.2427 1.1818
13 7 1.3660 -4.8097 0.4996
14 16 1.6802 -6.4235 0.3010
15 8 3.0847 -6.5394 0.1189
16 8 0.9714 -7.0999 1.3302
17 6 0.9390 -6.9158 -1.2200
18 6 1.7174 -7.3318 -2.2560
19 6 1.1521 -7.7249 -3.4672
20 6 -0.1973 -7.7030 -3.6483
21 6 -1.0310 -7.2795 -2.6010
22 6 -2.4306 -7.2428 -2.7472
23 6 -3.1785 -6.8201 -1.6855
24 6 -2.5517 -6.4413 -0.5002
25 7 -1.2481 -6.4767 -0.3673
26 6 -0.4587 -6.8853 -1.3660
27 6 2.2162 -3.7038 0.0226
28 1 -0.4850 0.8400 -0.0004
29 1 -0.2206 -1.9480 -1.3895
30 1 -0.6600 -2.2526 0.9152
31 1 0.7592 -2.3048 2.0093
32 1 0.1833 -4.5581 2.2251
33 1 -0.7192 -4.5704 0.6844
34 1 2.7905 -7.3577 -2.1373
35 1 1.7927 -8.0512 -4.2732
36 1 -0.6238 -8.0097 -4.5919
37 1 -2.9000 -7.5405 -3.6733
38 1 -4.2550 -6.7804 -1.7643
39 1 -3.1559 -6.1096 0.3312
40 1 2.6551 -3.9523 -0.9436
41 1 2.9988 -3.4843 0.7489
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592072467.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:38:58
Heat of formation + Delta-G solvation = -77.850252 kcal
Electronic energy + Delta-G solvation = -29501.608001 eV
Core-core repulsion = 25472.753400 eV
Total energy + Delta-G solvation = -4028.854600 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.098 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.81242 -39.73812 -38.49518 -37.97406 -36.96313 -35.99093 -34.64481 -34.17402
-31.62689 -31.24431 -30.85308 -29.95687 -26.69222 -25.45331 -24.68980 -23.82137
-23.02574 -21.61466 -20.06491 -19.31449 -19.30964 -18.72290 -18.46635 -17.92998
-16.94252 -16.88029 -16.74207 -16.16863 -15.87187 -15.72468 -15.44906 -15.10768
-15.03816 -14.60964 -14.48038 -14.08438 -13.96285 -13.64420 -13.49842 -13.40385
-13.26571 -13.16015 -13.08816 -12.96746 -12.74768 -12.56845 -12.43803 -12.27376
-12.20868 -12.04865 -11.83955 -11.69361 -11.20324 -10.61510 -10.42683 -10.07704
-9.89734 -9.83931 -9.56939 -8.18602 -6.32227 -0.96031 -0.56101 -0.20630
0.74990 1.44184 1.46549 1.54734 1.78497 1.98375 2.42544 2.66101
2.98928 3.05343 3.24253 3.28045 3.67457 3.72706 3.76700 3.87435
4.00394 4.06666 4.17907 4.28939 4.37157 4.39809 4.49869 4.57554
4.59449 4.77209 4.83396 4.89820 5.00121 5.03194 5.07741 5.23611
5.25483 5.30463 5.46664 5.49535 5.52885 5.60820 5.80820 5.82335
6.17826 6.71179 6.86541 7.36665 7.41892 8.87197
Molecular weight = 348.10amu
Principal moments of inertia in cm(-1)
A = 0.013378 B = 0.004216 C = 0.003882
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2092.479846 B = 6639.064073 C = 7210.817097
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.906 5.906
2 C 0.037 3.963
3 Si 0.957 3.043
4 H -0.278 1.278
5 H -0.281 1.281
6 H -0.272 1.272
7 C -0.560 4.560
8 H 0.057 0.943
9 C 0.241 3.759
10 O -0.585 6.585
11 C -0.121 4.121
12 C 0.129 3.871
13 N -0.999 5.999
14 S 2.723 3.277
15 O -0.989 6.989
16 O -0.972 6.972
17 C -0.687 4.687
18 C 0.010 3.990
19 C -0.155 4.155
20 C -0.023 4.023
21 C -0.146 4.146
22 C -0.039 4.039
23 C -0.179 4.179
24 C 0.141 3.859
25 N -0.524 5.524
26 C 0.177 3.823
27 C 0.138 3.862
28 H 0.268 0.732
29 H 0.372 0.628
30 H 0.071 0.929
31 H 0.055 0.945
32 H 0.060 0.940
33 H 0.076 0.924
34 H 0.153 0.847
35 H 0.177 0.823
36 H 0.185 0.815
37 H 0.186 0.814
38 H 0.181 0.819
39 H 0.183 0.817
40 H 0.062 0.938
41 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.622 -14.750 -8.714 18.750
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.545 5.545
2 C -0.164 4.164
3 Si 0.783 3.217
4 H -0.204 1.204
5 H -0.207 1.207
6 H -0.197 1.197
7 C -0.598 4.598
8 H 0.076 0.924
9 C 0.200 3.800
10 O -0.393 6.393
11 C -0.161 4.161
12 C 0.004 3.996
13 N -0.837 5.837
14 S 2.818 3.182
15 O -0.979 6.979
16 O -0.963 6.963
17 C -0.777 4.777
18 C -0.011 4.011
19 C -0.173 4.173
20 C -0.041 4.041
21 C -0.149 4.149
22 C -0.065 4.065
23 C -0.198 4.198
24 C -0.029 4.029
25 N -0.233 5.233
26 C 0.055 3.945
27 C 0.013 3.987
28 H 0.078 0.922
29 H 0.220 0.780
30 H 0.090 0.910
31 H 0.074 0.926
32 H 0.078 0.922
33 H 0.094 0.906
34 H 0.170 0.830
35 H 0.194 0.806
36 H 0.202 0.798
37 H 0.203 0.797
38 H 0.198 0.802
39 H 0.200 0.800
40 H 0.080 0.920
41 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -6.343 -15.490 -7.480 18.334
hybrid contribution -0.538 1.448 -0.793 1.737
sum -6.881 -14.042 -8.273 17.691
Atomic orbital electron populations
1.69844 1.06674 1.28065 1.49890 1.25586 0.95782 1.01902 0.93160
0.85590 0.78711 0.79190 0.78176 1.20403 1.20655 1.19685 1.21714
0.94005 0.91871 1.52244 0.92427 1.19728 0.88097 0.90748 0.81439
1.86133 1.47835 1.65177 1.40129 1.22973 1.01293 0.91913 0.99873
1.21850 0.87525 0.94528 0.95674 1.58229 1.33715 1.21565 1.70194
1.00618 0.72278 0.71124 0.74209 1.93496 1.30715 1.86192 1.87542
1.93498 1.74781 1.72390 1.55603 1.30486 1.02844 1.20820 1.23529
1.21254 1.00880 0.87258 0.91678 1.21474 0.96537 1.01853 0.97449
1.21869 0.93343 0.90705 0.98221 1.19291 0.96641 1.03975 0.95025
1.22014 0.90647 0.93097 1.00731 1.22321 1.03707 1.00490 0.93294
1.23655 0.89664 0.90885 0.98707 1.68013 1.08049 1.16291 1.30984
1.18217 0.91574 0.93903 0.90828 1.22012 0.92878 0.85754 0.98068
0.92239 0.78004 0.91033 0.92582 0.92171 0.90557 0.82965 0.80602
0.79767 0.79717 0.80209 0.80006 0.91996 0.90600
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -47.06 10.86 21.45 0.23 -46.83 16
2 C 0.04 1.92 5.32 84.65 0.45 2.37 16
3 Si 0.96 41.68 29.54 68.60 2.03 43.71 16
4 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16
5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16
6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16
7 C -0.56 -29.77 8.26 25.60 0.21 -29.56 16
8 H 0.06 3.05 7.79 -2.91 -0.02 3.03 16
9 C 0.24 11.94 0.86 -10.15 -0.01 11.93 16
10 O -0.59 -29.91 13.14 -148.98 -1.96 -31.87 16
11 C -0.12 -5.58 5.34 31.78 0.17 -5.41 16
12 C 0.13 5.40 6.87 86.73 0.60 6.00 16
13 N -1.00 -42.58 3.70 -506.44 -1.87 -44.45 16
14 S 2.72 110.27 5.54 -56.49 -0.31 109.96 16
15 O -0.99 -41.72 16.52 -128.00 -2.11 -43.84 16
16 O -0.97 -42.74 16.91 -128.00 -2.16 -44.91 16
17 C -0.69 -24.25 5.91 22.34 0.13 -24.12 16
18 C 0.01 0.29 9.47 22.03 0.21 0.50 16
19 C -0.15 -3.08 9.95 22.05 0.22 -2.86 16
20 C -0.02 -0.41 9.78 22.32 0.22 -0.20 16
21 C -0.15 -3.58 5.74 -21.28 -0.12 -3.70 16
22 C -0.04 -0.66 9.90 22.50 0.22 -0.44 16
23 C -0.18 -3.05 10.03 22.14 0.22 -2.83 16
24 C 0.14 3.49 11.15 85.07 0.95 4.44 16
25 N -0.52 -17.80 7.00 -188.64 -1.32 -19.12 16
26 C 0.18 5.95 6.56 40.28 0.26 6.21 16
27 C 0.14 6.30 6.16 86.85 0.54 6.84 16
28 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16
29 H 0.37 19.03 7.72 -74.06 -0.57 18.46 16
30 H 0.07 3.41 7.48 -2.39 -0.02 3.40 16
31 H 0.06 2.64 8.04 -2.39 -0.02 2.62 16
32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16
33 H 0.08 3.09 5.98 -2.39 -0.01 3.08 16
34 H 0.15 3.98 7.26 -2.91 -0.02 3.96 16
35 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16
36 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16
37 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16
38 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16
39 H 0.18 3.43 8.06 -2.91 -0.02 3.40 16
40 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16
41 H 0.08 3.37 8.03 -2.39 -0.02 3.35 16
Total: -1.00 -73.93 352.99 -2.71 -76.64
By element:
Atomic # 1 Polarization: 31.02 SS G_CDS: 0.51 Total: 31.53 kcal
Atomic # 6 Polarization: -35.10 SS G_CDS: 4.27 Total: -30.83 kcal
Atomic # 7 Polarization: -107.44 SS G_CDS: -2.96 Total: -110.40 kcal
Atomic # 8 Polarization: -114.38 SS G_CDS: -6.24 Total: -120.61 kcal
Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal
Atomic # 16 Polarization: 110.27 SS G_CDS: -0.31 Total: 109.96 kcal
Total: -73.93 -2.71 -76.64 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592072467.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.209 kcal
(2) G-P(sol) polarization free energy of solvation -73.935 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.144 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.706 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.641 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.850 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds