Wall clock time and date at job start Wed Apr 1 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99822 * 2 1 4 4 H 1.48504 * 109.47067 * 264.99517 * 3 2 1 5 5 H 1.48491 * 109.47232 * 25.00043 * 3 2 1 6 6 H 1.48502 * 109.46865 * 144.99940 * 3 2 1 7 7 C 1.37872 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00410 * 185.05946 * 7 2 1 9 9 C 1.50707 * 119.99958 * 5.05697 * 7 2 1 10 10 O 1.42906 * 110.88417 * 60.78224 * 9 7 2 11 11 C 1.55157 * 111.00343 * 296.90867 * 9 7 2 12 12 C 1.54326 * 102.94008 * 206.42042 * 11 9 7 13 13 N 1.47025 * 107.26874 * 22.19227 * 12 11 9 14 14 S 1.65605 * 125.64532 * 181.01254 * 13 12 11 15 15 O 1.42103 * 106.40304 * 203.56305 * 14 13 12 16 16 O 1.42097 * 106.40317 * 336.48447 * 14 13 12 17 17 C 1.76208 * 107.21710 * 90.02388 * 14 13 12 18 18 C 1.36107 * 120.12266 * 114.99845 * 17 14 13 19 19 C 1.39320 * 121.05972 * 180.02562 * 18 17 14 20 20 C 1.36170 * 120.87437 * 0.02562 * 19 18 17 21 21 C 1.40403 * 119.61173 * 359.97438 * 20 19 18 22 22 C 1.40773 * 121.38449 * 180.02562 * 21 20 19 23 23 C 1.36571 * 118.14955 * 179.97438 * 22 21 20 24 24 C 1.39338 * 119.94257 * 359.97438 * 23 22 21 25 25 N 1.31084 * 121.75036 * 0.02562 * 24 23 22 26 26 C 1.33694 * 121.31751 * 359.70966 * 25 24 23 27 27 C 1.47425 * 108.70676 * 1.05693 * 13 12 11 28 28 H 0.96998 * 119.99961 * 0.02562 * 1 2 3 29 29 H 0.96692 * 114.00035 * 290.74761 * 10 9 7 30 30 H 1.08992 * 110.72452 * 88.05567 * 11 9 7 31 31 H 1.09002 * 110.86914 * 324.84855 * 11 9 7 32 32 H 1.08999 * 109.88477 * 141.60378 * 12 11 9 33 33 H 1.08994 * 109.88261 * 262.77512 * 12 11 9 34 34 H 1.07996 * 119.46922 * 0.02562 * 18 17 14 35 35 H 1.08002 * 119.56294 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.19757 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.92587 * 359.97438 * 22 21 20 38 38 H 1.08006 * 120.03095 * 180.02562 * 23 22 21 39 39 H 1.07995 * 119.12669 * 180.02562 * 24 23 22 40 40 H 1.08995 * 110.36539 * 217.03628 * 27 13 12 41 41 H 1.09000 * 110.45693 * 94.75818 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9854 -1.3948 5 1 1.3978 2.6809 0.5917 6 1 3.4898 1.4730 0.8031 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0819 9 6 1.2555 -2.4966 -0.1162 10 8 0.5279 -2.5585 -1.3446 11 6 0.3138 -2.7063 1.0990 12 6 0.1935 -4.2427 1.1818 13 7 1.3660 -4.8097 0.4996 14 16 1.6802 -6.4235 0.3010 15 8 3.0847 -6.5394 0.1189 16 8 0.9714 -7.0999 1.3302 17 6 0.9390 -6.9158 -1.2200 18 6 1.7174 -7.3318 -2.2560 19 6 1.1521 -7.7249 -3.4672 20 6 -0.1973 -7.7030 -3.6483 21 6 -1.0310 -7.2795 -2.6010 22 6 -2.4306 -7.2428 -2.7472 23 6 -3.1785 -6.8201 -1.6855 24 6 -2.5517 -6.4413 -0.5002 25 7 -1.2481 -6.4767 -0.3673 26 6 -0.4587 -6.8853 -1.3660 27 6 2.2162 -3.7038 0.0226 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2206 -1.9480 -1.3895 30 1 -0.6600 -2.2526 0.9152 31 1 0.7592 -2.3048 2.0093 32 1 0.1833 -4.5581 2.2251 33 1 -0.7192 -4.5704 0.6844 34 1 2.7905 -7.3577 -2.1373 35 1 1.7927 -8.0512 -4.2732 36 1 -0.6238 -8.0097 -4.5919 37 1 -2.9000 -7.5405 -3.6733 38 1 -4.2550 -6.7804 -1.7643 39 1 -3.1559 -6.1096 0.3312 40 1 2.6551 -3.9523 -0.9436 41 1 2.9988 -3.4843 0.7489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592072467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:58 Heat of formation + Delta-G solvation = -77.850252 kcal Electronic energy + Delta-G solvation = -29501.608001 eV Core-core repulsion = 25472.753400 eV Total energy + Delta-G solvation = -4028.854600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81242 -39.73812 -38.49518 -37.97406 -36.96313 -35.99093 -34.64481 -34.17402 -31.62689 -31.24431 -30.85308 -29.95687 -26.69222 -25.45331 -24.68980 -23.82137 -23.02574 -21.61466 -20.06491 -19.31449 -19.30964 -18.72290 -18.46635 -17.92998 -16.94252 -16.88029 -16.74207 -16.16863 -15.87187 -15.72468 -15.44906 -15.10768 -15.03816 -14.60964 -14.48038 -14.08438 -13.96285 -13.64420 -13.49842 -13.40385 -13.26571 -13.16015 -13.08816 -12.96746 -12.74768 -12.56845 -12.43803 -12.27376 -12.20868 -12.04865 -11.83955 -11.69361 -11.20324 -10.61510 -10.42683 -10.07704 -9.89734 -9.83931 -9.56939 -8.18602 -6.32227 -0.96031 -0.56101 -0.20630 0.74990 1.44184 1.46549 1.54734 1.78497 1.98375 2.42544 2.66101 2.98928 3.05343 3.24253 3.28045 3.67457 3.72706 3.76700 3.87435 4.00394 4.06666 4.17907 4.28939 4.37157 4.39809 4.49869 4.57554 4.59449 4.77209 4.83396 4.89820 5.00121 5.03194 5.07741 5.23611 5.25483 5.30463 5.46664 5.49535 5.52885 5.60820 5.80820 5.82335 6.17826 6.71179 6.86541 7.36665 7.41892 8.87197 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.004216 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.479846 B = 6639.064073 C = 7210.817097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.037 3.963 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.560 4.560 8 H 0.057 0.943 9 C 0.241 3.759 10 O -0.585 6.585 11 C -0.121 4.121 12 C 0.129 3.871 13 N -0.999 5.999 14 S 2.723 3.277 15 O -0.989 6.989 16 O -0.972 6.972 17 C -0.687 4.687 18 C 0.010 3.990 19 C -0.155 4.155 20 C -0.023 4.023 21 C -0.146 4.146 22 C -0.039 4.039 23 C -0.179 4.179 24 C 0.141 3.859 25 N -0.524 5.524 26 C 0.177 3.823 27 C 0.138 3.862 28 H 0.268 0.732 29 H 0.372 0.628 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.153 0.847 35 H 0.177 0.823 36 H 0.185 0.815 37 H 0.186 0.814 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.062 0.938 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.622 -14.750 -8.714 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.164 4.164 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.598 4.598 8 H 0.076 0.924 9 C 0.200 3.800 10 O -0.393 6.393 11 C -0.161 4.161 12 C 0.004 3.996 13 N -0.837 5.837 14 S 2.818 3.182 15 O -0.979 6.979 16 O -0.963 6.963 17 C -0.777 4.777 18 C -0.011 4.011 19 C -0.173 4.173 20 C -0.041 4.041 21 C -0.149 4.149 22 C -0.065 4.065 23 C -0.198 4.198 24 C -0.029 4.029 25 N -0.233 5.233 26 C 0.055 3.945 27 C 0.013 3.987 28 H 0.078 0.922 29 H 0.220 0.780 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.170 0.830 35 H 0.194 0.806 36 H 0.202 0.798 37 H 0.203 0.797 38 H 0.198 0.802 39 H 0.200 0.800 40 H 0.080 0.920 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.343 -15.490 -7.480 18.334 hybrid contribution -0.538 1.448 -0.793 1.737 sum -6.881 -14.042 -8.273 17.691 Atomic orbital electron populations 1.69844 1.06674 1.28065 1.49890 1.25586 0.95782 1.01902 0.93160 0.85590 0.78711 0.79190 0.78176 1.20403 1.20655 1.19685 1.21714 0.94005 0.91871 1.52244 0.92427 1.19728 0.88097 0.90748 0.81439 1.86133 1.47835 1.65177 1.40129 1.22973 1.01293 0.91913 0.99873 1.21850 0.87525 0.94528 0.95674 1.58229 1.33715 1.21565 1.70194 1.00618 0.72278 0.71124 0.74209 1.93496 1.30715 1.86192 1.87542 1.93498 1.74781 1.72390 1.55603 1.30486 1.02844 1.20820 1.23529 1.21254 1.00880 0.87258 0.91678 1.21474 0.96537 1.01853 0.97449 1.21869 0.93343 0.90705 0.98221 1.19291 0.96641 1.03975 0.95025 1.22014 0.90647 0.93097 1.00731 1.22321 1.03707 1.00490 0.93294 1.23655 0.89664 0.90885 0.98707 1.68013 1.08049 1.16291 1.30984 1.18217 0.91574 0.93903 0.90828 1.22012 0.92878 0.85754 0.98068 0.92239 0.78004 0.91033 0.92582 0.92171 0.90557 0.82965 0.80602 0.79767 0.79717 0.80209 0.80006 0.91996 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.06 10.86 21.45 0.23 -46.83 16 2 C 0.04 1.92 5.32 84.65 0.45 2.37 16 3 Si 0.96 41.68 29.54 68.60 2.03 43.71 16 4 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.56 -29.77 8.26 25.60 0.21 -29.56 16 8 H 0.06 3.05 7.79 -2.91 -0.02 3.03 16 9 C 0.24 11.94 0.86 -10.15 -0.01 11.93 16 10 O -0.59 -29.91 13.14 -148.98 -1.96 -31.87 16 11 C -0.12 -5.58 5.34 31.78 0.17 -5.41 16 12 C 0.13 5.40 6.87 86.73 0.60 6.00 16 13 N -1.00 -42.58 3.70 -506.44 -1.87 -44.45 16 14 S 2.72 110.27 5.54 -56.49 -0.31 109.96 16 15 O -0.99 -41.72 16.52 -128.00 -2.11 -43.84 16 16 O -0.97 -42.74 16.91 -128.00 -2.16 -44.91 16 17 C -0.69 -24.25 5.91 22.34 0.13 -24.12 16 18 C 0.01 0.29 9.47 22.03 0.21 0.50 16 19 C -0.15 -3.08 9.95 22.05 0.22 -2.86 16 20 C -0.02 -0.41 9.78 22.32 0.22 -0.20 16 21 C -0.15 -3.58 5.74 -21.28 -0.12 -3.70 16 22 C -0.04 -0.66 9.90 22.50 0.22 -0.44 16 23 C -0.18 -3.05 10.03 22.14 0.22 -2.83 16 24 C 0.14 3.49 11.15 85.07 0.95 4.44 16 25 N -0.52 -17.80 7.00 -188.64 -1.32 -19.12 16 26 C 0.18 5.95 6.56 40.28 0.26 6.21 16 27 C 0.14 6.30 6.16 86.85 0.54 6.84 16 28 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 29 H 0.37 19.03 7.72 -74.06 -0.57 18.46 16 30 H 0.07 3.41 7.48 -2.39 -0.02 3.40 16 31 H 0.06 2.64 8.04 -2.39 -0.02 2.62 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.08 3.09 5.98 -2.39 -0.01 3.08 16 34 H 0.15 3.98 7.26 -2.91 -0.02 3.96 16 35 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 38 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.18 3.43 8.06 -2.91 -0.02 3.40 16 40 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.08 3.37 8.03 -2.39 -0.02 3.35 16 Total: -1.00 -73.93 352.99 -2.71 -76.64 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.51 Total: 31.53 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 4.27 Total: -30.83 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -2.96 Total: -110.40 kcal Atomic # 8 Polarization: -114.38 SS G_CDS: -6.24 Total: -120.61 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 110.27 SS G_CDS: -0.31 Total: 109.96 kcal Total: -73.93 -2.71 -76.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.209 kcal (2) G-P(sol) polarization free energy of solvation -73.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds