Wall clock time and date at job start Wed Apr 1 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47110 * 60.68427 * 3 2 1 5 5 N 1.46509 * 109.46924 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99828 * 274.99733 * 5 4 3 7 7 C 1.50702 * 109.47223 * 274.99716 * 6 5 4 8 8 H 1.07999 * 119.99873 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99586 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00377 * 0.02562 * 9 7 6 11 11 Si 1.86809 * 119.99555 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47162 * 59.99904 * 11 9 7 13 13 H 1.48499 * 109.47003 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47160 * 299.99978 * 11 9 7 15 15 S 1.65603 * 119.99841 * 95.00015 * 5 4 3 16 16 O 1.42104 * 106.40135 * 336.46006 * 15 5 4 17 17 O 1.42095 * 106.40194 * 203.53779 * 15 5 4 18 18 C 1.76200 * 107.21666 * 90.00000 * 15 5 4 19 19 C 1.38412 * 119.92130 * 90.00226 * 18 15 5 20 20 C 1.38277 * 120.20332 * 180.02562 * 19 18 15 21 21 C 1.38218 * 120.32532 * 359.97063 * 20 19 18 22 22 C 1.39456 * 119.90993 * 0.02745 * 21 20 19 23 23 C 1.37694 * 119.91525 * 270.02084 * 18 15 5 24 24 C 1.47427 * 110.67656 * 180.02562 * 22 21 20 25 25 O 1.21257 * 126.05048 * 179.97438 * 24 22 21 26 26 C 1.50950 * 107.99847 * 359.92073 * 24 22 21 27 27 C 1.50983 * 130.49024 * 179.97438 * 21 20 19 28 28 H 1.08997 * 109.47685 * 300.67921 * 3 2 1 29 29 H 1.09007 * 109.46454 * 180.68062 * 3 2 1 30 30 H 1.09003 * 109.47240 * 59.99944 * 4 3 2 31 31 H 1.08998 * 109.47032 * 299.99332 * 4 3 2 32 32 H 1.09000 * 109.47304 * 35.00621 * 6 5 4 33 33 H 1.09009 * 109.46499 * 155.00418 * 6 5 4 34 34 H 0.97007 * 120.00127 * 180.02562 * 10 9 7 35 35 H 1.08008 * 119.90241 * 0.02562 * 19 18 15 36 36 H 1.07991 * 119.83902 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.97136 * 0.02562 * 23 18 15 38 38 H 1.09002 * 110.27317 * 241.06250 * 26 24 22 39 39 H 1.08997 * 110.27019 * 119.08473 * 26 24 22 40 40 H 1.09003 * 110.08578 * 60.81752 * 27 21 20 41 41 H 1.08998 * 110.09402 * 299.23887 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7054 -1.2577 5 7 4.5834 -0.7042 -1.2580 6 6 5.3148 0.4525 -1.7808 7 6 5.4586 0.3224 -3.2753 8 1 5.0461 -0.5359 -3.7847 9 6 6.1160 1.2996 -3.9921 10 7 6.6179 2.3449 -3.3718 11 14 6.2936 1.1386 -5.8448 12 1 4.9470 1.0810 -6.4680 13 1 7.0351 2.3111 -6.3746 14 1 7.0406 -0.1045 -6.1643 15 16 5.4126 -2.0103 -0.6674 16 8 4.5315 -2.6729 0.2294 17 8 6.6951 -1.5323 -0.2858 18 6 5.6740 -3.1149 -2.0151 19 6 6.8149 -3.0004 -2.7903 20 6 7.0257 -3.8638 -3.8496 21 6 6.1004 -4.8478 -4.1427 22 6 4.9477 -4.9715 -3.3676 23 6 4.7426 -4.0898 -2.2946 24 6 4.1082 -6.0805 -3.8563 25 8 3.0467 -6.4322 -3.3875 26 6 4.8015 -6.7017 -5.0446 27 6 6.0962 -5.8979 -5.2276 28 1 2.9717 -0.5235 0.8838 29 1 2.9708 1.0285 0.0122 30 1 2.7547 -0.1811 -2.1415 31 1 2.7555 -1.7331 -1.2699 32 1 4.7668 1.3652 -1.5465 33 1 6.3032 0.4945 -1.3230 34 1 7.0800 3.0326 -3.8763 35 1 7.5428 -2.2343 -2.5672 36 1 7.9181 -3.7694 -4.4504 37 1 3.8531 -4.1759 -1.6881 38 1 4.1761 -6.6173 -5.9333 39 1 5.0315 -7.7479 -4.8432 40 1 6.9613 -6.5520 -5.1187 41 1 6.1066 -5.4229 -6.2085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000655508708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:08 Heat of formation + Delta-G solvation = -57.746532 kcal Electronic energy + Delta-G solvation = -28444.539996 eV Core-core repulsion = 24416.557159 eV Total energy + Delta-G solvation = -4027.982838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62568 -38.20760 -37.21965 -36.81692 -35.74238 -35.45604 -35.18833 -32.89380 -31.22955 -30.74784 -29.54664 -27.06533 -26.26101 -23.89289 -23.29165 -22.27867 -21.64282 -20.35181 -18.42683 -17.59635 -17.37612 -16.84108 -16.51079 -16.34795 -16.04354 -15.86180 -15.45039 -14.83632 -14.68878 -14.56397 -14.22494 -13.87894 -13.75284 -13.70309 -13.50848 -12.96595 -12.74779 -12.55167 -12.54050 -12.32653 -12.09444 -12.04775 -11.78941 -11.76539 -11.57823 -11.55768 -11.47980 -11.25338 -11.08276 -10.74748 -10.67813 -10.55470 -10.19092 -9.97503 -9.83118 -9.19654 -9.05564 -8.61649 -8.33695 -6.23869 -4.30985 0.47241 0.77565 1.00702 2.22594 2.89277 2.97087 3.16508 3.23135 3.24144 3.28851 3.56367 3.73622 4.08675 4.17744 4.25818 4.29958 4.41910 4.64247 4.74327 4.79227 4.96045 5.09300 5.11786 5.20949 5.27139 5.31550 5.34150 5.52512 5.54330 5.59864 5.63476 5.71272 5.81163 6.00212 6.11186 6.14571 6.19833 6.31792 6.71885 7.09793 7.23783 7.32388 7.39149 7.72145 7.72662 7.99207 8.73803 9.36285 10.83913 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.007460 B = 0.005332 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3752.684267 B = 5250.328910 C = 7150.524894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.052 4.052 4 C 0.136 3.864 5 N -0.979 5.979 6 C 0.240 3.760 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.069 3.931 10 N -0.886 5.886 11 Si 0.889 3.111 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.275 1.275 15 S 2.690 3.310 16 O -0.971 6.971 17 O -0.949 6.949 18 C -0.681 4.681 19 C 0.041 3.959 20 C -0.143 4.143 21 C -0.004 4.004 22 C -0.224 4.224 23 C 0.048 3.952 24 C 0.410 3.590 25 O -0.445 6.445 26 C -0.171 4.171 27 C -0.089 4.089 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.266 0.734 35 H 0.154 0.846 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -12.614 -2.176 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.094 4.094 4 C 0.008 3.992 5 N -0.817 5.817 6 C 0.119 3.881 7 C -0.586 4.586 8 H 0.080 0.920 9 C -0.135 4.135 10 N -0.524 5.524 11 Si 0.717 3.283 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.201 1.201 15 S 2.779 3.221 16 O -0.961 6.961 17 O -0.939 6.939 18 C -0.766 4.766 19 C 0.022 3.978 20 C -0.161 4.161 21 C -0.004 4.004 22 C -0.226 4.226 23 C 0.029 3.971 24 C 0.287 3.713 25 O -0.320 6.320 26 C -0.209 4.209 27 C -0.125 4.125 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.172 0.828 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.152 -12.742 -1.132 12.793 hybrid contribution 0.665 -0.057 -2.032 2.139 sum 0.817 -12.799 -3.164 13.210 Atomic orbital electron populations 1.81184 1.13063 1.09492 1.08959 1.29076 0.95080 0.92629 0.92873 1.19889 0.81431 1.05760 1.02341 1.20949 0.80398 1.00951 0.96944 1.57446 1.13036 1.32195 1.78999 1.19383 0.92532 0.82174 0.94017 1.21484 1.37149 1.07524 0.92410 0.91961 1.24892 0.95082 0.95046 0.98432 1.69898 1.36426 1.09915 1.36118 0.86698 0.78395 0.77733 0.85485 1.20196 1.21120 1.20081 1.02061 0.73624 0.72703 0.73741 1.93546 1.66360 1.75530 1.60711 1.93574 1.40101 1.79560 1.80706 1.31222 1.03935 1.16839 1.24587 1.21203 0.93556 0.93833 0.89231 1.20723 1.00226 0.95944 0.99227 1.20825 0.92611 0.93345 0.93643 1.21123 0.99313 1.01695 1.00448 1.20842 0.95857 0.88576 0.91850 1.22486 0.83970 0.81327 0.83486 1.90557 1.20402 1.62133 1.58890 1.22303 0.97600 1.01644 0.99331 1.20911 0.98198 0.95423 0.98000 0.86935 0.86275 0.88602 0.90537 0.93517 0.92399 0.92371 0.82801 0.84570 0.84037 0.87251 0.87309 0.88563 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.41 18.54 42.16 0.78 -6.63 16 2 C 0.22 3.12 15.43 -20.76 -0.32 2.80 16 3 C -0.05 -0.65 6.02 -29.52 -0.18 -0.82 16 4 C 0.14 1.95 5.30 -4.04 -0.02 1.93 16 5 N -0.98 -16.72 2.77 -115.66 -0.32 -17.04 16 6 C 0.24 5.03 5.43 -5.19 -0.03 5.00 16 7 C -0.55 -12.66 9.38 -34.44 -0.32 -12.98 16 8 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -23.08 13.29 55.43 0.74 -22.35 16 11 Si 0.89 19.20 29.54 -169.99 -5.02 14.18 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 S 2.69 46.13 5.64 -107.50 -0.61 45.52 16 16 O -0.97 -16.86 16.24 -57.17 -0.93 -17.79 16 17 O -0.95 -18.68 15.83 -57.17 -0.90 -19.58 16 18 C -0.68 -10.92 5.96 -39.72 -0.24 -11.16 16 19 C 0.04 0.63 9.52 -39.50 -0.38 0.25 16 20 C -0.14 -1.82 10.03 -39.57 -0.40 -2.22 16 21 C 0.00 -0.04 6.21 -104.04 -0.65 -0.69 16 22 C -0.22 -3.09 6.12 -104.89 -0.64 -3.73 16 23 C 0.05 0.73 9.58 -38.97 -0.37 0.36 16 24 C 0.41 5.22 7.78 -30.45 -0.24 4.98 16 25 O -0.44 -7.03 18.02 5.58 0.10 -6.93 16 26 C -0.17 -1.37 6.86 -27.51 -0.19 -1.56 16 27 C -0.09 -0.68 6.80 -27.49 -0.19 -0.87 16 28 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.12 1.34 8.14 -51.92 -0.42 0.91 16 30 H 0.10 1.39 8.11 -51.93 -0.42 0.96 16 31 H 0.08 1.00 7.61 -51.93 -0.40 0.60 16 32 H 0.05 0.99 8.11 -51.93 -0.42 0.57 16 33 H 0.06 1.33 6.92 -51.92 -0.36 0.97 16 34 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.15 2.38 7.61 -52.48 -0.40 1.98 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.14 2.05 7.60 -52.49 -0.40 1.65 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -31.52 376.05 -9.65 -41.17 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.90 Total: 0.88 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -4.25 Total: -17.11 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 1.20 Total: -46.01 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.73 Total: -44.30 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 16 Polarization: 46.13 SS G_CDS: -0.61 Total: 45.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.52 -9.65 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000655508708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.578 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds