Wall clock time and date at job start Wed Apr 1 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47110 * 60.68427 * 3 2 1 5 5 N 1.46509 * 109.46924 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99828 * 274.99733 * 5 4 3 7 7 C 1.50702 * 109.47223 * 274.99716 * 6 5 4 8 8 H 1.07999 * 119.99873 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99586 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00377 * 0.02562 * 9 7 6 11 11 Si 1.86809 * 119.99555 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47162 * 59.99904 * 11 9 7 13 13 H 1.48499 * 109.47003 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47160 * 299.99978 * 11 9 7 15 15 S 1.65603 * 119.99841 * 95.00015 * 5 4 3 16 16 O 1.42104 * 106.40135 * 336.46006 * 15 5 4 17 17 O 1.42095 * 106.40194 * 203.53779 * 15 5 4 18 18 C 1.76200 * 107.21666 * 90.00000 * 15 5 4 19 19 C 1.38412 * 119.92130 * 90.00226 * 18 15 5 20 20 C 1.38277 * 120.20332 * 180.02562 * 19 18 15 21 21 C 1.38218 * 120.32532 * 359.97063 * 20 19 18 22 22 C 1.39456 * 119.90993 * 0.02745 * 21 20 19 23 23 C 1.37694 * 119.91525 * 270.02084 * 18 15 5 24 24 C 1.47427 * 110.67656 * 180.02562 * 22 21 20 25 25 O 1.21257 * 126.05048 * 179.97438 * 24 22 21 26 26 C 1.50950 * 107.99847 * 359.92073 * 24 22 21 27 27 C 1.50983 * 130.49024 * 179.97438 * 21 20 19 28 28 H 1.08997 * 109.47685 * 300.67921 * 3 2 1 29 29 H 1.09007 * 109.46454 * 180.68062 * 3 2 1 30 30 H 1.09003 * 109.47240 * 59.99944 * 4 3 2 31 31 H 1.08998 * 109.47032 * 299.99332 * 4 3 2 32 32 H 1.09000 * 109.47304 * 35.00621 * 6 5 4 33 33 H 1.09009 * 109.46499 * 155.00418 * 6 5 4 34 34 H 0.97007 * 120.00127 * 180.02562 * 10 9 7 35 35 H 1.08008 * 119.90241 * 0.02562 * 19 18 15 36 36 H 1.07991 * 119.83902 * 180.02562 * 20 19 18 37 37 H 1.08001 * 119.97136 * 0.02562 * 23 18 15 38 38 H 1.09002 * 110.27317 * 241.06250 * 26 24 22 39 39 H 1.08997 * 110.27019 * 119.08473 * 26 24 22 40 40 H 1.09003 * 110.08578 * 60.81752 * 27 21 20 41 41 H 1.08998 * 110.09402 * 299.23887 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7054 -1.2577 5 7 4.5834 -0.7042 -1.2580 6 6 5.3148 0.4525 -1.7808 7 6 5.4586 0.3224 -3.2753 8 1 5.0461 -0.5359 -3.7847 9 6 6.1160 1.2996 -3.9921 10 7 6.6179 2.3449 -3.3718 11 14 6.2936 1.1386 -5.8448 12 1 4.9470 1.0810 -6.4680 13 1 7.0351 2.3111 -6.3746 14 1 7.0406 -0.1045 -6.1643 15 16 5.4126 -2.0103 -0.6674 16 8 4.5315 -2.6729 0.2294 17 8 6.6951 -1.5323 -0.2858 18 6 5.6740 -3.1149 -2.0151 19 6 6.8149 -3.0004 -2.7903 20 6 7.0257 -3.8638 -3.8496 21 6 6.1004 -4.8478 -4.1427 22 6 4.9477 -4.9715 -3.3676 23 6 4.7426 -4.0898 -2.2946 24 6 4.1082 -6.0805 -3.8563 25 8 3.0467 -6.4322 -3.3875 26 6 4.8015 -6.7017 -5.0446 27 6 6.0962 -5.8979 -5.2276 28 1 2.9717 -0.5235 0.8838 29 1 2.9708 1.0285 0.0122 30 1 2.7547 -0.1811 -2.1415 31 1 2.7555 -1.7331 -1.2699 32 1 4.7668 1.3652 -1.5465 33 1 6.3032 0.4945 -1.3230 34 1 7.0800 3.0326 -3.8763 35 1 7.5428 -2.2343 -2.5672 36 1 7.9181 -3.7694 -4.4504 37 1 3.8531 -4.1759 -1.6881 38 1 4.1761 -6.6173 -5.9333 39 1 5.0315 -7.7479 -4.8432 40 1 6.9613 -6.5520 -5.1187 41 1 6.1066 -5.4229 -6.2085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000655508708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:07 Heat of formation + Delta-G solvation = -76.888278 kcal Electronic energy + Delta-G solvation = -28445.370045 eV Core-core repulsion = 24416.557159 eV Total energy + Delta-G solvation = -4028.812886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58766 -39.26785 -38.52253 -38.23849 -37.10748 -36.89433 -36.10284 -34.65406 -32.28807 -32.10662 -30.46516 -28.73423 -27.13797 -25.36408 -24.30890 -23.75745 -22.65946 -21.32478 -19.73748 -18.91791 -18.63645 -18.25060 -18.07119 -17.49059 -17.03959 -16.79303 -16.74053 -16.27180 -15.96633 -15.73377 -15.34437 -15.15681 -14.93889 -14.71976 -14.55300 -14.35703 -14.07723 -13.80603 -13.67825 -13.50003 -13.28029 -13.19032 -13.16706 -13.03588 -12.93637 -12.86470 -12.67753 -12.65046 -12.31254 -12.21182 -12.08257 -11.94634 -11.66245 -11.59296 -10.81191 -10.49841 -10.21969 -10.14742 -9.83300 -8.10666 -6.22037 -0.63179 -0.48153 -0.14060 1.22397 1.46546 1.49019 1.55037 1.70068 1.80731 2.00160 2.43513 2.49039 2.75090 2.87022 3.09427 3.22891 3.31768 3.45284 3.60903 3.82087 3.90247 4.03617 4.12658 4.13338 4.25560 4.33872 4.47543 4.50978 4.55680 4.73609 4.81157 4.92230 4.99635 5.01655 5.03857 5.08449 5.08773 5.20279 5.41255 5.52978 5.68043 5.77845 5.90414 6.17671 6.38208 6.56920 6.89291 7.47760 8.96615 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.007460 B = 0.005332 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3752.684267 B = 5250.328910 C = 7150.524894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.046 4.046 4 C 0.128 3.872 5 N -0.978 5.978 6 C 0.253 3.747 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.022 3.978 10 N -0.922 5.922 11 Si 0.941 3.059 12 H -0.275 1.275 13 H -0.290 1.290 14 H -0.261 1.261 15 S 2.699 3.301 16 O -0.977 6.977 17 O -0.980 6.980 18 C -0.693 4.693 19 C 0.017 3.983 20 C -0.142 4.142 21 C 0.010 3.990 22 C -0.245 4.245 23 C 0.032 3.968 24 C 0.404 3.596 25 O -0.487 6.487 26 C -0.160 4.160 27 C -0.083 4.083 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.265 0.735 35 H 0.143 0.857 36 H 0.168 0.832 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.602 -14.821 -4.711 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.088 4.088 4 C 0.000 4.000 5 N -0.815 5.815 6 C 0.130 3.870 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.179 4.179 10 N -0.561 5.561 11 Si 0.767 3.233 12 H -0.201 1.201 13 H -0.216 1.216 14 H -0.186 1.186 15 S 2.791 3.209 16 O -0.968 6.968 17 O -0.971 6.971 18 C -0.781 4.781 19 C -0.002 4.002 20 C -0.160 4.160 21 C 0.010 3.990 22 C -0.247 4.247 23 C 0.012 3.988 24 C 0.285 3.715 25 O -0.365 6.365 26 C -0.197 4.197 27 C -0.119 4.119 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.161 0.839 36 H 0.185 0.815 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.733 -14.948 -3.645 15.403 hybrid contribution 0.494 0.535 -1.243 1.441 sum 1.227 -14.413 -4.889 15.269 Atomic orbital electron populations 1.81209 1.14250 1.10965 1.10315 1.29183 0.95026 0.91318 0.91602 1.19920 0.80289 1.06662 1.01913 1.21138 0.78801 1.02103 0.97923 1.57251 1.14034 1.31387 1.78869 1.18991 0.91779 0.83238 0.92981 1.21770 1.35886 1.07009 0.93440 0.91639 1.25581 0.95207 0.94972 1.02091 1.70009 1.37838 1.10811 1.37444 0.85858 0.78293 0.77949 0.81174 1.20084 1.21620 1.18579 1.01510 0.72803 0.72611 0.73957 1.93526 1.66332 1.75443 1.61457 1.93530 1.41556 1.80282 1.81715 1.30830 1.05109 1.17336 1.24801 1.21303 0.93342 0.94918 0.90679 1.21052 1.01442 0.95201 0.98354 1.21330 0.90756 0.93150 0.93779 1.21558 1.00779 1.02017 1.00356 1.20936 0.95725 0.89215 0.92903 1.23177 0.83215 0.80700 0.84402 1.90542 1.22186 1.63210 1.60527 1.22400 0.97278 1.02632 0.97374 1.21129 0.99154 0.94451 0.97191 0.85546 0.84790 0.88642 0.89268 0.93957 0.94781 0.92636 0.83931 0.81474 0.84463 0.85090 0.84606 0.85258 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.03 18.54 20.01 0.37 -15.66 16 2 C 0.25 6.79 15.43 89.44 1.38 8.17 16 3 C -0.05 -1.11 6.02 28.79 0.17 -0.94 16 4 C 0.13 3.65 5.30 86.38 0.46 4.11 16 5 N -0.98 -33.92 2.77 -519.82 -1.44 -35.36 16 6 C 0.25 10.82 5.43 85.63 0.47 11.29 16 7 C -0.54 -25.19 9.38 25.60 0.24 -24.95 16 8 H 0.07 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.02 1.07 5.46 84.65 0.46 1.53 16 10 N -0.92 -48.74 13.29 21.44 0.28 -48.45 16 11 Si 0.94 38.72 29.54 68.60 2.03 40.75 16 12 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 13 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 14 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 15 S 2.70 95.11 5.64 -56.49 -0.32 94.79 16 16 O -0.98 -34.51 16.24 -128.00 -2.08 -36.59 16 17 O -0.98 -40.21 15.83 -128.00 -2.03 -42.24 16 18 C -0.69 -22.49 5.96 22.18 0.13 -22.36 16 19 C 0.02 0.51 9.52 22.32 0.21 0.73 16 20 C -0.14 -3.28 10.03 22.27 0.22 -3.06 16 21 C 0.01 0.21 6.21 -19.49 -0.12 0.09 16 22 C -0.25 -6.39 6.12 -20.04 -0.12 -6.51 16 23 C 0.03 0.97 9.58 22.66 0.22 1.19 16 24 C 0.40 9.47 7.78 28.19 0.22 9.69 16 25 O -0.49 -15.07 18.02 -2.96 -0.05 -15.12 16 26 C -0.16 -1.81 6.86 30.09 0.21 -1.60 16 27 C -0.08 -0.82 6.80 30.10 0.20 -0.61 16 28 H 0.13 2.77 8.14 -2.39 -0.02 2.76 16 29 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 30 H 0.10 2.74 8.11 -2.39 -0.02 2.72 16 31 H 0.09 2.31 7.61 -2.39 -0.02 2.30 16 32 H 0.04 1.84 8.11 -2.39 -0.02 1.82 16 33 H 0.03 1.63 6.92 -2.38 -0.02 1.62 16 34 H 0.26 13.46 8.31 -92.70 -0.77 12.69 16 35 H 0.14 4.55 7.61 -2.91 -0.02 4.53 16 36 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 37 H 0.14 4.12 7.60 -2.91 -0.02 4.10 16 38 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -70.25 376.05 2.19 -68.06 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.07 Total: 13.05 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 4.35 Total: -23.23 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -0.78 Total: -99.48 kcal Atomic # 8 Polarization: -89.78 SS G_CDS: -4.16 Total: -93.94 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Atomic # 16 Polarization: 95.11 SS G_CDS: -0.32 Total: 94.79 kcal Total: -70.25 2.19 -68.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000655508708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.827 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds