Wall clock time and date at job start Wed Apr 1 2020 04:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86795 * 120.00014 * 2 1 4 4 H 1.48501 * 109.47336 * 269.99950 * 3 2 1 5 5 H 1.48501 * 109.47371 * 30.00065 * 3 2 1 6 6 H 1.48501 * 109.47251 * 149.99827 * 3 2 1 7 7 C 1.38950 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00233 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99702 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99877 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00029 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00197 * 179.97438 * 10 9 7 13 13 O 1.45192 * 109.47278 * 179.97438 * 12 10 9 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 10 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 13 18 18 C 1.35758 * 119.62714 * 269.72368 * 17 16 14 19 19 C 1.35352 * 120.70194 * 179.76327 * 18 17 16 20 20 C 1.40198 * 119.94910 * 0.50916 * 19 18 17 21 21 C 1.36398 * 119.26068 * 359.75175 * 20 19 18 22 22 C 1.50699 * 120.34223 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47490 * 359.97222 * 22 21 20 24 24 F 1.39898 * 109.47202 * 119.97955 * 22 21 20 25 25 F 1.39904 * 109.47049 * 239.97389 * 22 21 20 26 26 C 1.34664 * 119.62311 * 89.99786 * 17 16 14 27 27 O 1.22059 * 119.98433 * 0.02562 * 26 17 16 28 28 H 0.97003 * 120.00092 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00385 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46950 * 59.99192 * 12 10 9 31 31 H 1.08998 * 109.46940 * 300.00031 * 12 10 9 32 32 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 33 33 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 34 34 H 1.07997 * 119.64776 * 0.02562 * 18 17 16 35 35 H 1.08004 * 120.02773 * 180.28145 * 19 18 17 36 36 H 1.07998 * 120.36528 * 179.72425 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0011 13 8 2.1873 -5.9666 0.0004 14 6 1.6743 -7.2069 0.0003 15 8 0.4764 -7.3653 0.0012 16 6 2.5923 -8.4021 0.0001 17 7 1.7944 -9.6307 0.0006 18 6 1.4341 -10.1965 1.1809 19 6 0.6931 -11.3289 1.2067 20 6 0.2991 -11.9350 0.0056 21 6 0.6665 -11.3680 -1.1793 22 6 0.2557 -11.9987 -2.4849 23 9 -0.4929 -13.1527 -2.2302 24 9 -0.5186 -11.0925 -3.2173 25 9 1.3977 -12.3363 -3.2193 26 6 1.4314 -10.1891 -1.1698 27 8 1.7677 -9.6716 -2.2229 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6167 -4.9209 -0.8885 31 1 0.6175 -4.9205 0.8914 32 1 3.2211 -8.3771 -0.8899 33 1 3.2212 -8.3773 0.8900 34 1 1.7384 -9.7358 2.1091 35 1 0.4087 -11.7672 2.1520 36 1 -0.2885 -12.8411 0.0184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:04 Heat of formation + Delta-G solvation = -257.568508 kcal Electronic energy + Delta-G solvation = -29795.534328 eV Core-core repulsion = 24638.443853 eV Total energy + Delta-G solvation = -5157.090475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.081 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.26853 -47.84195 -47.64667 -42.13222 -40.34509 -38.23898 -37.50416 -36.45800 -35.41233 -34.06719 -31.46486 -31.29690 -29.81161 -28.02799 -26.79045 -24.78280 -23.78530 -23.25556 -21.36639 -19.69029 -19.09147 -18.85219 -18.60871 -18.21591 -18.09464 -17.61150 -17.40151 -16.82695 -16.57333 -16.21379 -15.79864 -15.23279 -15.03657 -14.61679 -14.59807 -14.47732 -14.40797 -14.14887 -13.98341 -13.86377 -13.84991 -13.62550 -13.18897 -13.09928 -12.92886 -12.53450 -12.31454 -12.13453 -12.11890 -11.66737 -11.27052 -11.17531 -10.62172 -10.59800 -10.53363 -10.47784 -10.33904 -9.65820 -8.73586 -8.59920 -8.14073 -6.54881 -3.97268 -0.04959 1.30326 1.62107 1.96159 2.41310 2.61352 2.97558 3.09917 3.20824 3.26455 3.51219 3.66478 3.71912 3.97073 4.03653 4.15444 4.26814 4.28472 4.38745 4.44539 4.67773 4.81208 4.90216 5.04665 5.09389 5.31311 5.38862 5.44230 5.58931 5.77715 5.95788 6.32521 6.37178 7.38553 7.43169 7.54115 7.88269 8.41984 9.01625 9.32996 9.82227 10.62198 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.001987 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.415112 B =14084.711249 C =14438.562033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.107 0.893 9 N -0.550 5.550 10 C 0.437 3.563 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.318 6.318 14 C 0.446 3.554 15 O -0.501 6.501 16 C 0.099 3.901 17 N -0.482 5.482 18 C 0.181 3.819 19 C -0.243 4.243 20 C 0.060 3.940 21 C -0.324 4.324 22 C 0.535 3.465 23 F -0.180 7.180 24 F -0.170 7.170 25 F -0.172 7.172 26 C 0.544 3.456 27 O -0.519 6.519 28 H 0.275 0.725 29 H 0.395 0.605 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.176 0.824 35 H 0.161 0.839 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 -26.331 5.106 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.432 4.432 8 H 0.125 0.875 9 N -0.187 5.187 10 C 0.221 3.779 11 O -0.460 6.460 12 C -0.015 4.015 13 O -0.232 6.232 14 C 0.287 3.713 15 O -0.389 6.389 16 C -0.024 4.024 17 N -0.192 5.192 18 C 0.053 3.947 19 C -0.265 4.265 20 C 0.038 3.962 21 C -0.329 4.329 22 C 0.480 3.520 23 F -0.162 7.162 24 F -0.151 7.151 25 F -0.153 7.153 26 C 0.343 3.657 27 O -0.398 6.398 28 H 0.085 0.915 29 H 0.229 0.771 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.193 0.807 35 H 0.179 0.821 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.038 -25.778 4.344 26.142 hybrid contribution -0.670 0.789 -0.097 1.039 sum -0.707 -24.989 4.248 25.357 Atomic orbital electron populations 1.69611 1.06037 1.28596 1.49396 1.25329 0.95700 0.99942 0.96759 0.85783 0.79208 0.80309 0.78571 1.20195 1.20778 1.19243 1.19730 0.93498 0.81678 1.48342 0.87543 1.41702 1.09402 1.04077 1.63560 1.19249 0.88322 0.83977 0.86303 1.90568 1.13325 1.86722 1.55418 1.22834 0.90722 0.84237 1.03725 1.86509 1.40406 1.13684 1.82567 1.23559 0.88662 0.85535 0.73571 1.90724 1.16395 1.86719 1.45034 1.21425 0.92200 0.78815 1.09923 1.45122 1.44876 1.22083 1.07112 1.22356 0.90501 0.92308 0.89566 1.20675 1.07290 0.99161 0.99411 1.21510 0.87951 0.96001 0.90764 1.20699 1.15184 1.02739 0.94298 1.17447 0.74885 0.75620 0.84003 1.93145 1.77468 1.51417 1.94150 1.93246 1.75560 1.67104 1.79175 1.93224 1.50475 1.92454 1.79174 1.16174 0.81343 0.84925 0.83213 1.91076 1.55788 1.64038 1.28896 0.91546 0.77131 0.89314 0.89344 0.83287 0.83787 0.80728 0.82099 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.80 13.05 55.50 0.72 -23.07 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.45 29.55 -169.99 -5.02 15.42 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 10 C 0.44 10.26 7.86 -10.98 -0.09 10.17 16 11 O -0.58 -15.58 16.08 -14.12 -0.23 -15.81 16 12 C 0.06 1.14 5.94 36.01 0.21 1.35 16 13 O -0.32 -5.44 9.75 -45.90 -0.45 -5.89 16 14 C 0.45 6.27 8.02 36.01 0.29 6.56 16 15 O -0.50 -8.23 16.18 -18.75 -0.30 -8.54 16 16 C 0.10 0.91 5.93 -5.19 -0.03 0.88 16 17 N -0.48 -4.54 2.07 -121.06 -0.25 -4.79 16 18 C 0.18 0.97 10.28 -16.84 -0.17 0.80 16 19 C -0.24 -1.08 10.01 -39.87 -0.40 -1.48 16 20 C 0.06 0.39 9.48 -39.51 -0.37 0.02 16 21 C -0.32 -3.50 5.38 -104.42 -0.56 -4.06 16 22 C 0.54 6.40 3.02 36.01 0.11 6.51 16 23 F -0.18 -1.76 16.00 2.25 0.04 -1.73 16 24 F -0.17 -2.43 17.01 2.25 0.04 -2.39 16 25 F -0.17 -2.25 17.01 2.25 0.04 -2.21 16 26 C 0.54 7.01 7.33 -15.45 -0.11 6.90 16 27 O -0.52 -8.72 15.64 4.86 0.08 -8.64 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 30 H 0.09 1.54 8.13 -51.93 -0.42 1.12 16 31 H 0.09 1.43 8.13 -51.93 -0.42 1.00 16 32 H 0.15 1.42 7.39 -51.93 -0.38 1.03 16 33 H 0.14 0.62 8.01 -51.93 -0.42 0.21 16 34 H 0.18 0.24 8.03 -52.49 -0.42 -0.18 16 35 H 0.16 0.17 8.06 -52.48 -0.42 -0.25 16 36 H 0.15 0.61 7.18 -52.49 -0.38 0.23 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -37.41 345.67 -4.25 -41.67 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -2.70 Total: 4.68 kcal Atomic # 6 Polarization: 21.19 SS G_CDS: -1.37 Total: 19.82 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.42 Total: -41.60 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.90 Total: -38.88 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.32 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.41 -4.25 -41.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.902 kcal (2) G-P(sol) polarization free energy of solvation -37.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds