Wall clock time and date at job start Wed Apr 1 2020 04:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86795 * 120.00014 * 2 1 4 4 H 1.48501 * 109.47336 * 269.99950 * 3 2 1 5 5 H 1.48501 * 109.47371 * 30.00065 * 3 2 1 6 6 H 1.48501 * 109.47251 * 149.99827 * 3 2 1 7 7 C 1.38950 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00233 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99702 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99877 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00029 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00197 * 179.97438 * 10 9 7 13 13 O 1.45192 * 109.47278 * 179.97438 * 12 10 9 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 10 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 13 18 18 C 1.35758 * 119.62714 * 269.72368 * 17 16 14 19 19 C 1.35352 * 120.70194 * 179.76327 * 18 17 16 20 20 C 1.40198 * 119.94910 * 0.50916 * 19 18 17 21 21 C 1.36398 * 119.26068 * 359.75175 * 20 19 18 22 22 C 1.50699 * 120.34223 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47490 * 359.97222 * 22 21 20 24 24 F 1.39898 * 109.47202 * 119.97955 * 22 21 20 25 25 F 1.39904 * 109.47049 * 239.97389 * 22 21 20 26 26 C 1.34664 * 119.62311 * 89.99786 * 17 16 14 27 27 O 1.22059 * 119.98433 * 0.02562 * 26 17 16 28 28 H 0.97003 * 120.00092 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00385 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46950 * 59.99192 * 12 10 9 31 31 H 1.08998 * 109.46940 * 300.00031 * 12 10 9 32 32 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 33 33 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 34 34 H 1.07997 * 119.64776 * 0.02562 * 18 17 16 35 35 H 1.08004 * 120.02773 * 180.28145 * 19 18 17 36 36 H 1.07998 * 120.36528 * 179.72425 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8630 0.0011 13 8 2.1873 -5.9666 0.0004 14 6 1.6743 -7.2069 0.0003 15 8 0.4764 -7.3653 0.0012 16 6 2.5923 -8.4021 0.0001 17 7 1.7944 -9.6307 0.0006 18 6 1.4341 -10.1965 1.1809 19 6 0.6931 -11.3289 1.2067 20 6 0.2991 -11.9350 0.0056 21 6 0.6665 -11.3680 -1.1793 22 6 0.2557 -11.9987 -2.4849 23 9 -0.4929 -13.1527 -2.2302 24 9 -0.5186 -11.0925 -3.2173 25 9 1.3977 -12.3363 -3.2193 26 6 1.4314 -10.1891 -1.1698 27 8 1.7677 -9.6716 -2.2229 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6167 -4.9209 -0.8885 31 1 0.6175 -4.9205 0.8914 32 1 3.2211 -8.3771 -0.8899 33 1 3.2212 -8.3773 0.8900 34 1 1.7384 -9.7358 2.1091 35 1 0.4087 -11.7672 2.1520 36 1 -0.2885 -12.8411 0.0184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731237986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:04 Heat of formation + Delta-G solvation = -283.439611 kcal Electronic energy + Delta-G solvation = -29796.656183 eV Core-core repulsion = 24638.443853 eV Total energy + Delta-G solvation = -5158.212330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.081 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.17777 -48.71938 -48.63301 -42.89026 -41.53954 -40.05857 -38.32597 -37.72363 -36.14477 -36.05999 -33.44868 -31.96973 -30.87564 -29.34059 -27.49769 -26.62188 -24.65846 -23.94024 -22.43328 -21.48579 -20.11820 -19.89548 -19.65716 -19.55225 -19.27081 -18.48411 -18.14226 -17.88548 -17.78552 -17.50339 -16.93025 -16.67748 -16.13061 -15.91661 -15.72180 -15.62881 -15.47584 -15.44330 -15.08554 -14.82884 -14.80274 -14.68437 -14.33323 -14.21780 -13.73604 -13.63806 -13.57530 -13.40431 -13.21905 -12.95652 -12.83454 -12.49604 -12.15383 -12.11608 -11.98093 -11.59927 -11.52805 -11.39148 -10.55293 -10.14486 -9.38150 -8.54496 -6.05330 -0.60902 0.66698 0.82832 0.89037 1.34674 1.39876 1.45825 1.56496 1.78510 1.84007 2.21990 2.31335 2.73531 2.94433 2.98248 3.11107 3.37998 3.43791 3.49653 3.65378 3.81284 3.86932 3.97803 4.09051 4.12579 4.17477 4.20840 4.52332 4.83826 5.00197 5.14359 5.35256 5.36577 5.69456 5.86222 6.34692 6.47225 6.61788 7.00423 7.36846 7.89689 8.62497 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.001987 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.415112 B =14084.711249 C =14438.562033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.998 3.002 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.436 3.564 11 O -0.616 6.616 12 C 0.074 3.926 13 O -0.334 6.334 14 C 0.447 3.553 15 O -0.527 6.527 16 C 0.105 3.895 17 N -0.484 5.484 18 C 0.179 3.821 19 C -0.229 4.229 20 C 0.083 3.917 21 C -0.369 4.369 22 C 0.531 3.469 23 F -0.168 7.168 24 F -0.192 7.192 25 F -0.186 7.186 26 C 0.528 3.472 27 O -0.583 6.583 28 H 0.281 0.719 29 H 0.400 0.600 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.142 0.858 33 H 0.203 0.797 34 H 0.225 0.775 35 H 0.209 0.791 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 -27.441 8.032 28.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.223 3.777 11 O -0.503 6.503 12 C -0.004 4.004 13 O -0.249 6.249 14 C 0.290 3.710 15 O -0.416 6.416 16 C -0.017 4.017 17 N -0.192 5.192 18 C 0.053 3.947 19 C -0.250 4.250 20 C 0.060 3.940 21 C -0.374 4.374 22 C 0.476 3.524 23 F -0.150 7.150 24 F -0.173 7.173 25 F -0.167 7.167 26 C 0.331 3.669 27 O -0.467 6.467 28 H 0.091 0.909 29 H 0.234 0.766 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.159 0.841 33 H 0.220 0.780 34 H 0.241 0.759 35 H 0.226 0.774 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.320 -26.929 7.316 27.907 hybrid contribution -0.643 0.996 -0.898 1.487 sum -0.963 -25.933 6.418 26.733 Atomic orbital electron populations 1.69670 1.07005 1.29780 1.49125 1.26143 0.96580 1.02668 0.95616 0.84848 0.77985 0.76305 0.78742 1.19666 1.19384 1.19300 1.19729 0.92981 0.83303 1.50650 0.89614 1.41752 1.09573 1.04245 1.63928 1.20053 0.88088 0.85305 0.84260 1.90532 1.15303 1.87656 1.56766 1.22529 0.90081 0.82418 1.05325 1.86512 1.40557 1.14601 1.83191 1.24493 0.89142 0.85301 0.72081 1.90709 1.17792 1.86777 1.46290 1.21704 0.91166 0.76551 1.12294 1.45157 1.44687 1.21817 1.07574 1.23357 0.89475 0.92391 0.89512 1.21320 1.05340 0.98216 1.00171 1.21994 0.85929 0.96051 0.89984 1.20581 1.18269 1.03696 0.94822 1.17713 0.74405 0.75756 0.84524 1.93150 1.77136 1.50663 1.94021 1.93191 1.76134 1.68022 1.79972 1.93184 1.51192 1.92557 1.79764 1.16581 0.81371 0.85491 0.83501 1.91024 1.58638 1.65921 1.31131 0.90941 0.76605 0.88521 0.86749 0.84050 0.78046 0.75871 0.77431 0.80332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.34 13.05 21.66 0.28 -48.06 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 3 Si 1.00 41.60 29.55 68.60 2.03 43.63 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.34 -18.71 9.68 84.04 0.81 -17.90 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.19 5.29 -306.98 -1.62 -29.81 16 10 C 0.44 20.77 7.86 87.66 0.69 21.46 16 11 O -0.62 -34.04 16.08 15.72 0.25 -33.78 16 12 C 0.07 2.66 5.94 71.24 0.42 3.09 16 13 O -0.33 -11.18 9.75 -45.06 -0.44 -11.62 16 14 C 0.45 11.99 8.02 71.24 0.57 12.56 16 15 O -0.53 -16.72 16.18 21.97 0.36 -16.37 16 16 C 0.11 1.71 5.93 85.63 0.51 2.21 16 17 N -0.48 -8.06 2.07 -655.07 -1.36 -9.41 16 18 C 0.18 1.07 10.28 83.42 0.86 1.93 16 19 C -0.23 -0.86 10.01 22.08 0.22 -0.64 16 20 C 0.08 0.83 9.48 22.32 0.21 1.04 16 21 C -0.37 -7.80 5.38 -19.73 -0.11 -7.91 16 22 C 0.53 13.18 3.02 71.24 0.21 13.40 16 23 F -0.17 -3.23 16.00 44.97 0.72 -2.51 16 24 F -0.19 -5.88 17.01 44.97 0.76 -5.12 16 25 F -0.19 -5.18 17.01 44.97 0.76 -4.41 16 26 C 0.53 13.68 7.33 84.82 0.62 14.31 16 27 O -0.58 -20.85 15.64 -5.51 -0.09 -20.93 16 28 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 30 H 0.10 3.34 8.13 -2.39 -0.02 3.32 16 31 H 0.11 3.53 8.13 -2.39 -0.02 3.51 16 32 H 0.14 2.65 7.39 -2.39 -0.02 2.63 16 33 H 0.20 0.83 8.01 -2.39 -0.02 0.81 16 34 H 0.22 -0.93 8.03 -2.91 -0.02 -0.95 16 35 H 0.21 -1.09 8.06 -2.91 -0.02 -1.11 16 36 H 0.18 0.74 7.18 -2.91 -0.02 0.72 16 Total: -1.00 -87.78 345.67 7.61 -80.18 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.45 Total: 14.70 kcal Atomic # 6 Polarization: 38.04 SS G_CDS: 5.49 Total: 43.53 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -2.70 Total: -87.29 kcal Atomic # 8 Polarization: -82.78 SS G_CDS: 0.08 Total: -82.70 kcal Atomic # 9 Polarization: -14.29 SS G_CDS: 2.25 Total: -12.04 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -87.78 7.61 -80.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.262 kcal (2) G-P(sol) polarization free energy of solvation -87.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -291.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -283.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds