Wall clock time and date at job start Wed Apr 1 2020 05:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35955 * 116.99882 * 2 1 4 4 C 1.38188 * 120.00196 * 0.21069 * 3 2 1 5 5 C 1.39777 * 119.84928 * 180.25513 * 4 3 2 6 6 C 1.47338 * 120.06591 * 179.79019 * 5 4 3 7 7 N 1.29882 * 120.00091 * 179.71834 * 6 5 4 8 8 N 1.40097 * 120.00202 * 179.97438 * 7 6 5 9 9 C 1.38966 * 120.00211 * 179.97438 * 8 7 6 10 10 N 1.32696 * 120.10425 * 0.02562 * 9 8 7 11 11 C 1.32221 * 119.92558 * 179.97438 * 10 9 8 12 12 C 1.38185 * 120.13814 * 0.02562 * 11 10 9 13 13 N 1.32300 * 120.21477 * 359.97438 * 12 11 10 14 14 C 1.32020 * 120.07040 * 359.97438 * 13 12 11 15 15 Cl 1.73599 * 120.06712 * 179.97438 * 14 13 12 16 16 C 1.39843 * 119.86679 * 359.50814 * 5 4 3 17 17 C 1.37769 * 120.01025 * 0.26197 * 16 5 4 18 18 C 1.38954 * 120.15013 * 359.97438 * 17 16 5 19 19 O 1.35702 * 119.93535 * 180.02562 * 18 17 16 20 20 C 1.34796 * 116.99756 * 354.38832 * 19 18 17 21 21 H 1.07994 * 120.00084 * 5.05675 * 20 19 18 22 22 C 1.38600 * 119.99592 * 185.06170 * 20 19 18 23 23 N 1.31596 * 119.99462 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00205 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47099 * 90.00011 * 24 22 20 26 26 H 1.48500 * 109.47042 * 210.00094 * 24 22 20 27 27 H 1.48494 * 109.46880 * 330.00140 * 24 22 20 28 28 H 1.09005 * 109.46931 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47548 * 299.99929 * 1 2 3 30 30 H 1.09001 * 109.46728 * 60.00553 * 1 2 3 31 31 H 1.07994 * 120.08077 * 0.03828 * 4 3 2 32 32 H 1.08004 * 119.99884 * 359.72464 * 6 5 4 33 33 H 0.97004 * 120.00067 * 0.02562 * 8 7 6 34 34 H 1.08007 * 119.93335 * 179.97438 * 11 10 9 35 35 H 1.08007 * 119.89552 * 179.70153 * 12 11 10 36 36 H 1.07999 * 119.99194 * 180.27828 * 16 5 4 37 37 H 1.08001 * 119.91885 * 180.02562 * 17 16 5 38 38 H 0.96999 * 119.99860 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2936 2.3703 0.0044 5 6 1.9314 3.6141 -0.0010 6 6 1.1337 4.8528 -0.0010 7 7 1.7277 6.0078 -0.0005 8 7 0.9691 7.1856 -0.0011 9 6 1.6046 8.4215 0.0000 10 7 2.9299 8.4883 0.0010 11 6 3.5309 9.6660 0.0015 12 6 2.7819 10.8273 0.0015 13 7 1.4603 10.7670 0.0005 14 6 0.8515 9.5956 -0.0010 15 17 -0.8827 9.5166 -0.0017 16 6 3.3283 3.6804 -0.0004 17 6 4.0731 2.5214 0.0000 18 6 3.4396 1.2846 0.0004 19 8 4.1776 0.1458 0.0013 20 6 5.5135 0.2822 -0.1156 21 1 5.9572 1.2667 -0.1223 22 6 6.3176 -0.8412 -0.2273 23 7 7.6217 -0.7080 -0.3420 24 14 5.5500 -2.5442 -0.2151 25 1 5.2193 -2.9481 -1.6054 26 1 6.5102 -3.5157 0.3674 27 1 4.3105 -2.5226 0.6022 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2151 2.3153 0.0085 32 1 0.0549 4.8003 -0.0013 33 1 0.0002 7.1386 -0.0015 34 1 4.6096 9.7206 0.0028 35 1 3.2769 11.7872 0.0068 36 1 3.8232 4.6403 -0.0001 37 1 5.1518 2.5743 0.0008 38 1 8.1845 -1.4941 -0.4206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733078292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:01 Heat of formation + Delta-G solvation = 65.109414 kcal Electronic energy + Delta-G solvation = -25990.563172 eV Core-core repulsion = 21862.323718 eV Total energy + Delta-G solvation = -4128.239454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31861 -39.85789 -37.84422 -37.70902 -37.14680 -36.24902 -34.41571 -33.11806 -32.48022 -30.32817 -29.72995 -28.67084 -26.80226 -25.61248 -24.94364 -23.97836 -22.74455 -21.69806 -20.42314 -18.71505 -18.21680 -17.87659 -17.68838 -17.43194 -16.75617 -15.93231 -15.72025 -15.39846 -15.38090 -15.06602 -14.54601 -14.14282 -13.92201 -13.80105 -13.62754 -13.46743 -13.33082 -12.52805 -12.39567 -12.25574 -11.93110 -11.92616 -11.79448 -11.71982 -11.36713 -11.20619 -10.92445 -10.88485 -10.76073 -10.31196 -10.17010 -9.95270 -9.56065 -9.45669 -8.98332 -8.33748 -8.01354 -7.04594 -6.54575 -4.15537 0.36832 0.76977 1.34371 1.37447 2.03661 2.17593 2.76913 3.18977 3.23278 3.39065 3.40515 3.74015 3.79362 3.89670 4.17514 4.24724 4.38060 4.57328 4.71947 4.79231 4.89132 4.98668 5.11171 5.31351 5.37951 5.44202 5.66631 5.70551 5.76443 5.87008 6.05191 6.10574 6.37691 6.40713 6.73706 6.92774 6.96223 7.12285 7.34016 7.39134 7.53279 7.81881 7.98330 8.10660 8.79159 9.40085 10.51328 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.002174 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.422561 B =12875.531721 C =14542.704611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.051 3.949 4 C -0.134 4.134 5 C -0.131 4.131 6 C 0.142 3.858 7 N -0.249 5.249 8 N -0.558 5.558 9 C 0.401 3.599 10 N -0.449 5.449 11 C 0.110 3.890 12 C -0.003 4.003 13 N -0.395 5.395 14 C 0.058 3.942 15 Cl -0.027 7.027 16 C -0.043 4.043 17 C -0.211 4.211 18 C 0.158 3.842 19 O -0.191 6.191 20 C -0.387 4.387 21 H 0.111 0.889 22 C 0.066 3.934 23 N -0.867 5.867 24 Si 0.905 3.095 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.254 1.254 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.395 0.605 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.127 0.873 37 H 0.144 0.856 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.598 16.260 0.643 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.222 6.222 3 C 0.006 3.994 4 C -0.156 4.156 5 C -0.135 4.135 6 C -0.065 4.065 7 N -0.055 5.055 8 N -0.280 5.280 9 C 0.161 3.839 10 N -0.171 5.171 11 C -0.053 4.053 12 C -0.164 4.164 13 N -0.110 5.110 14 C -0.118 4.118 15 Cl 0.001 6.999 16 C -0.063 4.063 17 C -0.230 4.230 18 C 0.102 3.898 19 O -0.094 6.094 20 C -0.462 4.462 21 H 0.129 0.871 22 C -0.139 4.139 23 N -0.503 5.503 24 Si 0.730 3.270 25 H -0.197 1.197 26 H -0.207 1.207 27 H -0.178 1.178 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.237 0.763 34 H 0.198 0.802 35 H 0.194 0.806 36 H 0.145 0.855 37 H 0.162 0.838 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.621 16.134 0.643 21.125 hybrid contribution -1.802 -0.669 -0.034 1.923 sum -15.423 15.465 0.609 21.849 Atomic orbital electron populations 1.22923 0.80034 1.03113 1.00525 1.86191 1.19743 1.26323 1.89941 1.17943 0.89212 0.84472 1.07757 1.20667 0.98515 0.90540 1.05851 1.17481 0.92520 0.88780 1.14753 1.24357 0.97097 0.90723 0.94360 1.75140 1.21810 0.91685 1.16853 1.45414 1.06502 1.00732 1.75350 1.18351 0.89403 0.83907 0.92198 1.68373 1.06224 1.27682 1.14773 1.23842 1.02383 0.87213 0.91847 1.23439 0.88170 1.00770 1.04057 1.67585 1.11590 1.24996 1.06861 1.21812 0.88047 0.89729 1.12233 1.98392 1.06762 1.97800 1.96943 1.21015 0.92206 0.98079 0.95016 1.21023 1.01376 0.90426 1.10214 1.18607 0.87702 0.87089 0.96386 1.83614 1.20436 1.27487 1.77819 1.20892 0.77148 0.97239 1.50878 0.87128 1.24507 0.94546 0.99693 0.95154 1.69662 1.03113 1.31959 1.45591 0.86167 0.79847 0.81465 0.79547 1.19684 1.20687 1.17786 0.89013 0.93335 0.93318 0.85753 0.87516 0.76340 0.80215 0.80608 0.85472 0.83823 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.36 16 2 O -0.31 -5.75 10.28 -34.21 -0.35 -6.10 16 3 C 0.05 0.99 6.70 -39.12 -0.26 0.73 16 4 C -0.13 -2.10 8.77 -39.02 -0.34 -2.44 16 5 C -0.13 -2.08 5.87 -105.02 -0.62 -2.70 16 6 C 0.14 1.89 10.74 -14.68 -0.16 1.73 16 7 N -0.25 -3.62 10.20 32.15 0.33 -3.29 16 8 N -0.56 -6.96 6.38 31.24 0.20 -6.76 16 9 C 0.40 5.13 7.61 -154.67 -1.18 3.95 16 10 N -0.45 -5.88 10.07 -12.20 -0.12 -6.00 16 11 C 0.11 1.00 11.21 -17.40 -0.20 0.80 16 12 C 0.00 -0.02 11.21 -17.37 -0.19 -0.22 16 13 N -0.39 -4.36 10.48 -9.99 -0.10 -4.47 16 14 C 0.06 0.66 7.32 -17.00 -0.12 0.54 16 15 Cl -0.03 -0.26 27.78 -51.86 -1.44 -1.70 16 16 C -0.04 -0.76 9.57 -39.15 -0.37 -1.14 16 17 C -0.21 -4.34 9.14 -39.49 -0.36 -4.71 16 18 C 0.16 3.52 6.67 -38.83 -0.26 3.27 16 19 O -0.19 -4.93 8.35 -14.32 -0.12 -5.05 16 20 C -0.39 -10.49 9.94 30.87 0.31 -10.18 16 21 H 0.11 3.03 5.42 -52.49 -0.28 2.74 16 22 C 0.07 1.80 5.49 -17.52 -0.10 1.70 16 23 N -0.87 -24.19 13.97 55.48 0.77 -23.41 16 24 Si 0.90 21.21 28.62 -169.99 -4.86 16.35 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.25 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 30 H 0.05 0.51 7.67 -51.93 -0.40 0.12 16 31 H 0.12 1.48 6.28 -52.49 -0.33 1.15 16 32 H 0.11 1.04 8.03 -52.48 -0.42 0.62 16 33 H 0.39 3.94 7.33 -182.60 -1.34 2.60 16 34 H 0.18 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.18 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.13 2.19 7.54 -52.49 -0.40 1.80 16 37 H 0.14 3.08 5.62 -52.49 -0.29 2.78 16 38 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -32.08 355.60 -7.47 -39.55 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.26 Total: 2.84 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.86 Total: -7.31 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 1.07 Total: -43.94 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.47 Total: -11.15 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.86 Total: 16.35 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.44 Total: -1.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.08 -7.47 -39.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733078292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.660 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds