Wall clock time and date at job start Wed Apr 1 2020 05:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35955 * 116.99882 * 2 1 4 4 C 1.38188 * 120.00196 * 0.21069 * 3 2 1 5 5 C 1.39777 * 119.84928 * 180.25513 * 4 3 2 6 6 C 1.47338 * 120.06591 * 179.79019 * 5 4 3 7 7 N 1.29882 * 120.00091 * 179.71834 * 6 5 4 8 8 N 1.40097 * 120.00202 * 179.97438 * 7 6 5 9 9 C 1.38966 * 120.00211 * 179.97438 * 8 7 6 10 10 N 1.32696 * 120.10425 * 0.02562 * 9 8 7 11 11 C 1.32221 * 119.92558 * 179.97438 * 10 9 8 12 12 C 1.38185 * 120.13814 * 0.02562 * 11 10 9 13 13 N 1.32300 * 120.21477 * 359.97438 * 12 11 10 14 14 C 1.32020 * 120.07040 * 359.97438 * 13 12 11 15 15 Cl 1.73599 * 120.06712 * 179.97438 * 14 13 12 16 16 C 1.39843 * 119.86679 * 359.50814 * 5 4 3 17 17 C 1.37769 * 120.01025 * 0.26197 * 16 5 4 18 18 C 1.38954 * 120.15013 * 359.97438 * 17 16 5 19 19 O 1.35702 * 119.93535 * 180.02562 * 18 17 16 20 20 C 1.34796 * 116.99756 * 354.38832 * 19 18 17 21 21 H 1.07994 * 120.00084 * 5.05675 * 20 19 18 22 22 C 1.38600 * 119.99592 * 185.06170 * 20 19 18 23 23 N 1.31596 * 119.99462 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00205 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47099 * 90.00011 * 24 22 20 26 26 H 1.48500 * 109.47042 * 210.00094 * 24 22 20 27 27 H 1.48494 * 109.46880 * 330.00140 * 24 22 20 28 28 H 1.09005 * 109.46931 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47548 * 299.99929 * 1 2 3 30 30 H 1.09001 * 109.46728 * 60.00553 * 1 2 3 31 31 H 1.07994 * 120.08077 * 0.03828 * 4 3 2 32 32 H 1.08004 * 119.99884 * 359.72464 * 6 5 4 33 33 H 0.97004 * 120.00067 * 0.02562 * 8 7 6 34 34 H 1.08007 * 119.93335 * 179.97438 * 11 10 9 35 35 H 1.08007 * 119.89552 * 179.70153 * 12 11 10 36 36 H 1.07999 * 119.99194 * 180.27828 * 16 5 4 37 37 H 1.08001 * 119.91885 * 180.02562 * 17 16 5 38 38 H 0.96999 * 119.99860 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2936 2.3703 0.0044 5 6 1.9314 3.6141 -0.0010 6 6 1.1337 4.8528 -0.0010 7 7 1.7277 6.0078 -0.0005 8 7 0.9691 7.1856 -0.0011 9 6 1.6046 8.4215 0.0000 10 7 2.9299 8.4883 0.0010 11 6 3.5309 9.6660 0.0015 12 6 2.7819 10.8273 0.0015 13 7 1.4603 10.7670 0.0005 14 6 0.8515 9.5956 -0.0010 15 17 -0.8827 9.5166 -0.0017 16 6 3.3283 3.6804 -0.0004 17 6 4.0731 2.5214 0.0000 18 6 3.4396 1.2846 0.0004 19 8 4.1776 0.1458 0.0013 20 6 5.5135 0.2822 -0.1156 21 1 5.9572 1.2667 -0.1223 22 6 6.3176 -0.8412 -0.2273 23 7 7.6217 -0.7080 -0.3420 24 14 5.5500 -2.5442 -0.2151 25 1 5.2193 -2.9481 -1.6054 26 1 6.5102 -3.5157 0.3674 27 1 4.3105 -2.5226 0.6022 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2151 2.3153 0.0085 32 1 0.0549 4.8003 -0.0013 33 1 0.0002 7.1386 -0.0015 34 1 4.6096 9.7206 0.0028 35 1 3.2769 11.7872 0.0068 36 1 3.8232 4.6403 -0.0001 37 1 5.1518 2.5743 0.0008 38 1 8.1845 -1.4941 -0.4206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733078292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:00 Heat of formation + Delta-G solvation = 43.426892 kcal Electronic energy + Delta-G solvation = -25991.503397 eV Core-core repulsion = 21862.323718 eV Total energy + Delta-G solvation = -4129.179679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.12809 -41.35716 -39.38747 -38.82524 -37.94776 -37.53957 -35.34652 -34.51246 -34.00008 -31.55990 -31.11015 -29.78717 -27.89275 -27.33099 -25.89846 -24.95762 -23.98090 -23.18537 -21.65865 -19.91498 -19.74852 -19.16988 -18.90890 -18.20068 -17.91980 -17.31592 -16.67768 -16.67014 -16.57163 -16.22497 -15.89852 -15.52447 -15.38424 -15.30527 -14.91638 -14.50029 -14.35862 -14.19994 -13.79075 -13.39906 -13.17073 -13.08915 -12.77260 -12.72511 -12.71130 -12.56877 -12.29036 -12.11026 -12.05658 -11.84341 -11.52304 -11.14132 -11.08416 -10.80839 -10.27443 -9.64907 -9.17154 -8.50768 -8.49413 -6.18992 -0.47456 -0.13737 0.20882 0.53872 0.55450 1.23761 1.32364 1.34348 1.53418 1.57317 2.29764 2.53695 2.59006 2.79084 2.94933 2.98293 3.11435 3.12108 3.47465 3.74138 3.95040 4.02321 4.23943 4.27719 4.35279 4.42670 4.48110 4.53743 4.61137 4.76547 4.82804 4.92922 5.15384 5.22737 5.44413 5.56997 5.59409 5.65111 5.78561 6.02186 6.16961 6.55757 6.61181 6.83570 7.13574 7.57589 8.60378 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.002174 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.422561 B =12875.531721 C =14542.704611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.340 6.340 3 C 0.053 3.947 4 C -0.117 4.117 5 C -0.095 4.095 6 C 0.137 3.863 7 N -0.264 5.264 8 N -0.556 5.556 9 C 0.378 3.622 10 N -0.486 5.486 11 C 0.108 3.892 12 C 0.016 3.984 13 N -0.414 5.414 14 C 0.051 3.949 15 Cl -0.016 7.016 16 C -0.060 4.060 17 C -0.211 4.211 18 C 0.112 3.888 19 O -0.229 6.229 20 C -0.398 4.398 21 H 0.087 0.913 22 C 0.014 3.986 23 N -0.918 5.918 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.266 1.266 27 H -0.264 1.264 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.177 0.823 32 H 0.157 0.843 33 H 0.407 0.593 34 H 0.214 0.786 35 H 0.218 0.782 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.466 18.744 0.699 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.255 6.255 3 C 0.008 3.992 4 C -0.138 4.138 5 C -0.099 4.099 6 C -0.072 4.072 7 N -0.069 5.069 8 N -0.280 5.280 9 C 0.140 3.860 10 N -0.207 5.207 11 C -0.054 4.054 12 C -0.146 4.146 13 N -0.130 5.130 14 C -0.123 4.123 15 Cl 0.012 6.988 16 C -0.080 4.080 17 C -0.231 4.231 18 C 0.061 3.939 19 O -0.135 6.135 20 C -0.474 4.474 21 H 0.104 0.896 22 C -0.185 4.185 23 N -0.558 5.558 24 Si 0.789 3.211 25 H -0.192 1.192 26 H -0.191 1.191 27 H -0.189 1.189 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.195 0.805 32 H 0.174 0.826 33 H 0.251 0.749 34 H 0.231 0.769 35 H 0.235 0.765 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.562 18.681 0.701 25.649 hybrid contribution -0.963 -0.785 -0.039 1.243 sum -18.525 17.896 0.661 25.766 Atomic orbital electron populations 1.23367 0.76575 1.05267 1.02626 1.86163 1.23382 1.26190 1.89801 1.18146 0.88235 0.86179 1.06630 1.21125 1.00789 0.88636 1.03218 1.17866 0.91737 0.90670 1.09607 1.24345 0.98947 0.88973 0.94904 1.74965 1.24112 0.92911 1.14935 1.45235 1.06906 0.99900 1.75996 1.18500 0.89710 0.84225 0.93566 1.68343 1.06816 1.29945 1.15626 1.24474 1.04016 0.86385 0.90509 1.24165 0.87366 1.02279 1.00806 1.67702 1.12878 1.24744 1.07701 1.21846 0.88702 0.89546 1.12190 1.98389 1.05715 1.97796 1.96889 1.21076 0.93548 0.97035 0.96384 1.20989 1.00656 0.91415 1.10029 1.19201 0.89418 0.86831 0.98499 1.83576 1.19235 1.28784 1.81886 1.20777 0.78531 0.96504 1.51578 0.89601 1.25219 0.94955 1.02952 0.95381 1.69740 1.04136 1.32822 1.49102 0.85267 0.78647 0.77740 0.79437 1.19167 1.19088 1.18856 0.87238 0.91031 0.91056 0.80544 0.82639 0.74936 0.76946 0.76538 0.85106 0.86254 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.34 -12.24 10.28 -79.07 -0.81 -13.05 16 3 C 0.05 2.00 6.70 22.57 0.15 2.16 16 4 C -0.12 -3.21 8.77 22.63 0.20 -3.01 16 5 C -0.10 -2.75 5.87 -20.12 -0.12 -2.87 16 6 C 0.14 3.05 10.74 87.38 0.94 3.99 16 7 N -0.26 -6.93 10.20 -52.21 -0.53 -7.46 16 8 N -0.56 -12.36 6.38 -55.07 -0.35 -12.71 16 9 C 0.38 8.88 7.61 133.07 1.01 9.90 16 10 N -0.49 -11.79 10.07 -192.51 -1.94 -13.73 16 11 C 0.11 1.67 11.21 84.62 0.95 2.62 16 12 C 0.02 0.21 11.21 84.61 0.95 1.16 16 13 N -0.41 -8.04 10.48 -185.51 -1.94 -9.99 16 14 C 0.05 1.07 7.32 84.97 0.62 1.69 16 15 Cl -0.02 -0.27 27.78 -2.72 -0.08 -0.35 16 16 C -0.06 -2.14 9.57 22.55 0.22 -1.93 16 17 C -0.21 -9.25 9.14 22.33 0.20 -9.04 16 18 C 0.11 5.22 6.67 22.75 0.15 5.37 16 19 O -0.23 -12.57 8.35 -7.89 -0.07 -12.63 16 20 C -0.40 -23.43 9.94 67.91 0.67 -22.75 16 21 H 0.09 5.24 5.42 -2.91 -0.02 5.23 16 22 C 0.01 0.82 5.49 84.81 0.47 1.28 16 23 N -0.92 -54.70 13.97 21.61 0.30 -54.40 16 24 Si 0.97 46.08 28.62 68.60 1.96 48.05 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.26 -12.81 7.11 99.48 0.71 -12.11 16 28 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.07 1.15 7.65 -2.39 -0.02 1.13 16 30 H 0.07 1.15 7.67 -2.39 -0.02 1.14 16 31 H 0.18 3.02 6.28 -2.91 -0.02 3.01 16 32 H 0.16 2.00 8.03 -2.91 -0.02 1.97 16 33 H 0.41 6.81 7.33 -213.32 -1.56 5.25 16 34 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.22 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.13 4.55 7.54 -2.91 -0.02 4.53 16 37 H 0.12 5.72 5.62 -2.91 -0.02 5.70 16 38 H 0.29 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -77.56 355.60 3.66 -73.91 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -0.41 Total: 12.37 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 7.53 Total: -10.01 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -4.47 Total: -98.29 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.88 Total: -25.68 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.96 Total: 48.05 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.35 kcal Total: -77.56 3.66 -73.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733078292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.333 kcal (2) G-P(sol) polarization free energy of solvation -77.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds