Wall clock time and date at job start Wed Apr 1 2020 05:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47161 * 2 1 4 4 C 1.50706 * 109.46835 * 120.00097 * 2 1 3 5 5 H 1.07998 * 119.99604 * 119.99819 * 4 2 1 6 6 C 1.37872 * 119.99932 * 299.99681 * 4 2 1 7 7 N 1.31517 * 120.00240 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00146 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46790 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47057 * 119.99488 * 8 6 4 11 11 H 1.48496 * 109.47680 * 240.00042 * 8 6 4 12 12 O 1.45196 * 109.46901 * 239.99824 * 2 1 3 13 13 C 1.34234 * 116.99938 * 90.00275 * 12 2 1 14 14 O 1.20822 * 119.99973 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00068 * 179.97438 * 13 12 2 16 16 N 1.46497 * 109.47128 * 180.02562 * 15 13 12 17 17 C 1.34523 * 124.46021 * 90.02507 * 16 15 13 18 18 O 1.21442 * 125.71494 * 359.96047 * 17 16 15 19 19 C 1.47816 * 108.57710 * 179.97438 * 17 16 15 20 20 C 1.38574 * 134.29825 * 180.02562 * 19 17 16 21 21 C 1.38608 * 119.71630 * 180.02562 * 20 19 17 22 22 C 1.38228 * 120.46457 * 359.96274 * 21 20 19 23 23 C 1.38610 * 120.45826 * 0.02562 * 22 21 20 24 24 N 1.48015 * 120.14210 * 179.97438 * 23 22 21 25 25 O 1.21799 * 119.99744 * 0.02562 * 24 23 22 26 26 O 1.21805 * 120.00356 * 180.02562 * 24 23 22 27 27 C 1.38571 * 119.72076 * 359.97438 * 23 22 21 28 28 C 1.34525 * 124.45753 * 269.71732 * 16 15 13 29 29 O 1.21448 * 125.70899 * 0.04602 * 28 16 15 30 30 H 1.09003 * 109.47130 * 300.00303 * 1 2 3 31 31 H 1.09001 * 109.46779 * 59.99791 * 1 2 3 32 32 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00188 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46932 * 300.00373 * 15 13 12 35 35 H 1.08997 * 109.47392 * 59.99712 * 15 13 12 36 36 H 1.07993 * 120.13915 * 359.94590 * 20 19 17 37 37 H 1.08003 * 119.76922 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.77134 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.1462 -2.2871 3.6038 10 1 3.1466 -0.1875 4.8165 11 1 1.1660 -1.5866 4.8161 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9983 1.2518 -2.2503 15 6 2.7193 -0.5771 -3.5492 16 7 2.8583 0.4439 -4.5906 17 6 3.9762 1.1587 -4.8114 18 8 5.0141 1.0621 -4.1882 19 6 3.7299 2.0818 -5.9393 20 6 4.4938 3.0337 -6.5954 21 6 3.9445 3.7495 -7.6476 22 6 2.6413 3.5197 -8.0468 23 6 1.8653 2.5705 -7.4001 24 7 0.4704 2.3305 -7.8330 25 8 0.0023 2.9673 -8.7597 26 8 -0.2094 1.4961 -7.2626 27 6 2.4010 1.8472 -6.3465 28 6 1.8866 0.7857 -5.4559 29 8 0.7721 0.3048 -5.4963 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.7082 1.1609 3.4844 34 1 3.6884 -1.0401 -3.3631 35 1 2.0105 -1.3373 -3.8774 36 1 5.5124 3.2180 -6.2874 37 1 4.5391 4.4919 -8.1594 38 1 2.2244 4.0841 -8.8678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733708229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:04 Heat of formation + Delta-G solvation = -86.249717 kcal Electronic energy + Delta-G solvation = -30203.184619 eV Core-core repulsion = 25595.379825 eV Total energy + Delta-G solvation = -4607.804794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.093 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.10577 -42.18850 -39.80535 -39.07031 -38.99586 -36.75599 -36.35879 -35.74415 -33.38629 -33.02911 -32.70162 -29.96307 -28.76279 -27.01278 -25.75492 -25.36992 -23.84196 -23.01643 -22.03350 -20.96438 -19.86324 -19.10014 -18.82298 -18.22103 -17.93394 -17.65256 -17.50229 -16.79212 -16.46588 -16.39142 -15.66206 -15.56858 -15.32991 -15.22077 -15.04515 -14.37410 -14.32032 -13.68761 -13.43705 -13.12319 -13.02075 -12.88144 -12.18260 -11.89207 -11.77809 -11.69334 -11.29314 -11.28429 -11.14004 -11.06214 -10.89736 -10.70335 -10.65895 -10.44002 -10.42328 -10.32375 -10.25064 -9.70182 -9.62726 -8.97437 -8.54864 -6.23101 -4.30643 -0.91010 -0.62593 0.79035 0.91543 1.35094 1.66547 2.45179 2.60905 2.68912 2.80533 3.21318 3.27408 3.31846 3.43576 3.53475 3.71054 3.91172 4.01884 4.13838 4.28720 4.38276 4.73483 4.82594 4.87327 5.00010 5.08647 5.10126 5.11864 5.39042 5.49507 6.00127 6.16520 6.56099 6.74179 6.83401 6.84843 7.04075 7.18335 7.35730 7.52184 7.65585 7.83627 8.06119 8.43875 8.78682 9.34886 10.84396 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.002670 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.769137 B =10483.383053 C =11254.419788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.071 0.929 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.914 3.086 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.348 6.348 13 C 0.440 3.560 14 O -0.513 6.513 15 C 0.118 3.882 16 N -0.558 5.558 17 C 0.582 3.418 18 O -0.441 6.441 19 C -0.125 4.125 20 C -0.001 4.001 21 C -0.092 4.092 22 C -0.040 4.040 23 C 0.019 3.981 24 N 0.012 4.988 25 O -0.164 6.164 26 O -0.101 6.101 27 C -0.072 4.072 28 C 0.565 3.435 29 O -0.397 6.397 30 H 0.101 0.899 31 H 0.016 0.984 32 H 0.039 0.961 33 H 0.266 0.734 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.288 4.679 -23.803 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.560 4.560 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.741 3.259 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.206 1.206 12 O -0.264 6.264 13 C 0.281 3.719 14 O -0.402 6.402 15 C -0.004 4.004 16 N -0.302 5.302 17 C 0.369 3.631 18 O -0.311 6.311 19 C -0.129 4.129 20 C -0.020 4.020 21 C -0.111 4.111 22 C -0.059 4.059 23 C -0.064 4.064 24 N 0.535 4.465 25 O -0.374 6.374 26 O -0.326 6.326 27 C -0.077 4.077 28 C 0.350 3.650 29 O -0.263 6.263 30 H 0.119 0.881 31 H 0.035 0.965 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.723 4.905 -23.022 25.103 hybrid contribution -0.232 -0.195 0.873 0.924 sum 8.490 4.710 -22.148 24.183 Atomic orbital electron populations 1.22174 0.97254 1.00353 1.01548 1.20746 0.91576 0.93924 0.77306 0.93521 1.21049 1.32664 1.13587 0.88703 0.91088 1.24903 0.94874 0.95095 0.99143 1.69908 1.35941 1.22564 1.24200 0.86185 0.78638 0.79471 0.81640 1.19406 1.20742 1.20642 1.86475 1.75495 1.43370 1.21021 1.23268 0.75674 0.86380 0.86564 1.90635 1.48336 1.16724 1.84533 1.21207 1.06934 0.88797 0.83429 1.46060 1.14320 1.38137 1.31665 1.17957 0.82970 0.79600 0.82545 1.90873 1.26337 1.64279 1.49573 1.20654 0.93672 1.00049 0.98558 1.21281 1.00701 0.89125 0.90905 1.21524 0.93917 0.99483 0.96166 1.21373 0.93377 0.93024 0.98115 1.20773 0.84284 1.02292 0.99088 1.43577 1.02428 1.00243 1.00222 1.94533 1.74477 1.47970 1.20457 1.94790 1.57639 1.25901 1.54313 1.20406 0.95773 0.96806 0.94677 1.17907 0.84528 0.82143 0.80457 1.90986 1.16429 1.51990 1.66847 0.88098 0.96459 0.94181 0.92364 0.84239 0.84229 0.81835 0.81536 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.33 37.16 0.35 -3.65 16 2 C 0.22 5.83 2.56 -27.88 -0.07 5.75 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 4 C -0.52 -14.60 8.90 -34.44 -0.31 -14.91 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.91 21.02 29.54 -169.99 -5.02 15.99 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 O -0.35 -8.12 9.86 -39.27 -0.39 -8.50 16 13 C 0.44 9.03 8.00 36.01 0.29 9.32 16 14 O -0.51 -12.11 15.65 -18.75 -0.29 -12.40 16 15 C 0.12 1.66 6.34 -5.20 -0.03 1.63 16 16 N -0.56 -7.81 2.11 -118.91 -0.25 -8.06 16 17 C 0.58 7.51 8.02 -12.46 -0.10 7.41 16 18 O -0.44 -6.54 17.68 5.42 0.10 -6.44 16 19 C -0.12 -1.20 6.41 -104.83 -0.67 -1.87 16 20 C 0.00 -0.01 10.09 -39.32 -0.40 -0.40 16 21 C -0.09 -0.29 10.03 -39.45 -0.40 -0.68 16 22 C -0.04 -0.22 9.56 -39.45 -0.38 -0.60 16 23 C 0.02 0.19 6.88 -79.69 -0.55 -0.36 16 24 N 0.01 0.15 4.45 34.09 0.15 0.31 16 25 O -0.16 -2.02 18.46 -29.46 -0.54 -2.57 16 26 O -0.10 -1.58 15.77 -36.97 -0.58 -2.16 16 27 C -0.07 -0.82 6.14 -104.83 -0.64 -1.46 16 28 C 0.56 8.11 7.88 -12.46 -0.10 8.01 16 29 O -0.40 -6.69 14.73 -18.30 -0.27 -6.95 16 30 H 0.10 2.76 6.07 -51.93 -0.32 2.45 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 34 H 0.14 1.60 7.96 -51.93 -0.41 1.18 16 35 H 0.14 1.62 7.96 -51.93 -0.41 1.20 16 36 H 0.16 0.44 8.06 -52.49 -0.42 0.01 16 37 H 0.17 -0.14 8.06 -52.48 -0.42 -0.57 16 38 H 0.17 0.55 7.62 -52.49 -0.40 0.15 16 LS Contribution 351.61 15.07 5.30 5.30 Total: -1.00 -36.27 351.61 -7.43 -43.69 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -3.15 Total: -3.34 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -3.10 Total: 9.81 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.53 Total: -32.42 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -1.98 Total: -39.03 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.27 -7.43 -43.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733708229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.555 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds