Wall clock time and date at job start Wed Apr 1 2020 05:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47161 * 2 1 4 4 C 1.50706 * 109.46835 * 120.00097 * 2 1 3 5 5 H 1.07998 * 119.99604 * 119.99819 * 4 2 1 6 6 C 1.37872 * 119.99932 * 299.99681 * 4 2 1 7 7 N 1.31517 * 120.00240 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00146 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46790 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47057 * 119.99488 * 8 6 4 11 11 H 1.48496 * 109.47680 * 240.00042 * 8 6 4 12 12 O 1.45196 * 109.46901 * 239.99824 * 2 1 3 13 13 C 1.34234 * 116.99938 * 90.00275 * 12 2 1 14 14 O 1.20822 * 119.99973 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00068 * 179.97438 * 13 12 2 16 16 N 1.46497 * 109.47128 * 180.02562 * 15 13 12 17 17 C 1.34523 * 124.46021 * 90.02507 * 16 15 13 18 18 O 1.21442 * 125.71494 * 359.96047 * 17 16 15 19 19 C 1.47816 * 108.57710 * 179.97438 * 17 16 15 20 20 C 1.38574 * 134.29825 * 180.02562 * 19 17 16 21 21 C 1.38608 * 119.71630 * 180.02562 * 20 19 17 22 22 C 1.38228 * 120.46457 * 359.96274 * 21 20 19 23 23 C 1.38610 * 120.45826 * 0.02562 * 22 21 20 24 24 N 1.48015 * 120.14210 * 179.97438 * 23 22 21 25 25 O 1.21799 * 119.99744 * 0.02562 * 24 23 22 26 26 O 1.21805 * 120.00356 * 180.02562 * 24 23 22 27 27 C 1.38571 * 119.72076 * 359.97438 * 23 22 21 28 28 C 1.34525 * 124.45753 * 269.71732 * 16 15 13 29 29 O 1.21448 * 125.70899 * 0.04602 * 28 16 15 30 30 H 1.09003 * 109.47130 * 300.00303 * 1 2 3 31 31 H 1.09001 * 109.46779 * 59.99791 * 1 2 3 32 32 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00188 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46932 * 300.00373 * 15 13 12 35 35 H 1.08997 * 109.47392 * 59.99712 * 15 13 12 36 36 H 1.07993 * 120.13915 * 359.94590 * 20 19 17 37 37 H 1.08003 * 119.76922 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.77134 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.1462 -2.2871 3.6038 10 1 3.1466 -0.1875 4.8165 11 1 1.1660 -1.5866 4.8161 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9983 1.2518 -2.2503 15 6 2.7193 -0.5771 -3.5492 16 7 2.8583 0.4439 -4.5906 17 6 3.9762 1.1587 -4.8114 18 8 5.0141 1.0621 -4.1882 19 6 3.7299 2.0818 -5.9393 20 6 4.4938 3.0337 -6.5954 21 6 3.9445 3.7495 -7.6476 22 6 2.6413 3.5197 -8.0468 23 6 1.8653 2.5705 -7.4001 24 7 0.4704 2.3305 -7.8330 25 8 0.0023 2.9673 -8.7597 26 8 -0.2094 1.4961 -7.2626 27 6 2.4010 1.8472 -6.3465 28 6 1.8866 0.7857 -5.4559 29 8 0.7721 0.3048 -5.4963 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.7082 1.1609 3.4844 34 1 3.6884 -1.0401 -3.3631 35 1 2.0105 -1.3373 -3.8774 36 1 5.5124 3.2180 -6.2874 37 1 4.5391 4.4919 -8.1594 38 1 2.2244 4.0841 -8.8678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733708229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:04 Heat of formation + Delta-G solvation = -109.036431 kcal Electronic energy + Delta-G solvation = -30204.172725 eV Core-core repulsion = 25595.379825 eV Total energy + Delta-G solvation = -4608.792900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.093 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.02519 -43.15104 -41.43154 -40.09740 -39.90979 -37.91872 -37.69790 -37.17036 -35.43525 -33.96142 -33.33662 -31.88731 -29.95404 -27.91485 -27.52690 -26.59728 -24.97483 -23.81096 -23.52126 -22.17613 -21.48334 -20.01718 -19.68415 -19.34284 -19.07541 -18.91096 -18.72446 -18.23341 -17.87984 -17.30699 -17.13103 -17.01713 -16.53448 -16.36490 -16.00574 -15.83389 -15.43786 -14.94676 -14.54365 -14.32872 -14.06652 -13.93815 -13.66877 -13.56014 -13.22998 -13.10393 -12.87653 -12.77274 -12.67386 -12.47292 -12.30629 -12.19803 -12.12461 -12.01337 -11.73620 -11.71199 -11.24065 -11.07550 -11.02950 -10.77457 -10.66583 -8.34057 -6.51874 -1.73871 -1.27753 -0.02940 0.12497 0.56697 0.62917 1.02897 1.36028 1.41173 1.41282 1.55602 1.93160 1.98793 2.06860 2.36788 2.68260 2.96926 3.03334 3.26266 3.52821 3.56718 3.64605 3.70374 3.89736 3.93899 4.00443 4.31513 4.41785 4.67130 4.68253 4.69006 4.72715 4.97863 5.01627 5.12156 5.19877 5.41112 5.51600 5.73419 5.79340 5.94852 6.13979 6.34832 6.50141 6.72650 7.19481 8.74214 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.002670 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.769137 B =10483.383053 C =11254.419788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.219 3.781 3 H 0.007 0.993 4 C -0.548 4.548 5 H 0.072 0.928 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.988 3.012 9 H -0.261 1.261 10 H -0.275 1.275 11 H -0.271 1.271 12 O -0.352 6.352 13 C 0.433 3.567 14 O -0.549 6.549 15 C 0.126 3.874 16 N -0.568 5.568 17 C 0.579 3.421 18 O -0.467 6.467 19 C -0.133 4.133 20 C 0.018 3.982 21 C -0.053 4.053 22 C -0.024 4.024 23 C 0.003 3.997 24 N 0.013 4.987 25 O -0.122 6.122 26 O -0.195 6.195 27 C -0.098 4.098 28 C 0.557 3.443 29 O -0.438 6.438 30 H 0.083 0.917 31 H 0.017 0.983 32 H 0.049 0.951 33 H 0.272 0.728 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.199 0.801 37 H 0.229 0.771 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.200 6.232 -25.901 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.166 3.834 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.810 3.190 9 H -0.184 1.184 10 H -0.201 1.201 11 H -0.196 1.196 12 O -0.268 6.268 13 C 0.276 3.724 14 O -0.441 6.441 15 C 0.005 3.995 16 N -0.311 5.311 17 C 0.369 3.631 18 O -0.338 6.338 19 C -0.138 4.138 20 C 0.000 4.000 21 C -0.070 4.070 22 C -0.043 4.043 23 C -0.081 4.081 24 N 0.531 4.469 25 O -0.348 6.348 26 O -0.399 6.399 27 C -0.103 4.103 28 C 0.345 3.655 29 O -0.306 6.306 30 H 0.101 0.899 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.188 0.812 35 H 0.182 0.818 36 H 0.216 0.784 37 H 0.245 0.755 38 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 11.602 6.324 -25.030 28.304 hybrid contribution -1.015 -0.410 1.286 1.688 sum 10.587 5.914 -23.745 26.662 Atomic orbital electron populations 1.22002 0.96785 1.00634 1.00637 1.20426 0.91960 0.92111 0.78910 0.97552 1.21325 1.33585 1.14060 0.89612 0.90943 1.25898 0.94624 0.95659 1.02331 1.70029 1.36524 1.23754 1.25314 0.85065 0.78351 0.78422 0.77147 1.18436 1.20089 1.19640 1.86457 1.75837 1.43310 1.21154 1.24530 0.74393 0.86149 0.87287 1.90606 1.49866 1.18495 1.85093 1.21370 1.08761 0.88902 0.80492 1.46254 1.15060 1.38452 1.31294 1.18486 0.82087 0.79520 0.83034 1.90850 1.26968 1.65169 1.50816 1.20571 0.93450 1.01435 0.98301 1.21903 1.01626 0.86573 0.89912 1.22255 0.92596 0.98237 0.93931 1.21999 0.93736 0.90866 0.97715 1.21081 0.82730 1.04218 1.00045 1.44011 1.03661 0.99534 0.99715 1.94456 1.75073 1.46057 1.19256 1.94831 1.59583 1.28898 1.56562 1.20193 0.96797 0.97404 0.95955 1.18525 0.83971 0.82400 0.80653 1.90954 1.17936 1.53585 1.68148 0.89859 0.96415 0.93144 0.91904 0.81166 0.81807 0.78391 0.75488 0.77976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.69 9.33 71.98 0.67 -7.02 16 2 C 0.22 12.36 2.56 29.85 0.08 12.44 16 3 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 4 C -0.55 -31.46 8.90 25.60 0.23 -31.24 16 5 H 0.07 4.03 7.81 -2.91 -0.02 4.01 16 6 C 0.01 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -53.53 11.32 21.45 0.24 -53.29 16 8 Si 0.99 43.11 29.54 68.60 2.03 45.13 16 9 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 12 O -0.35 -17.16 9.86 -51.46 -0.51 -17.67 16 13 C 0.43 18.72 8.00 71.24 0.57 19.29 16 14 O -0.55 -27.64 15.65 21.98 0.34 -27.30 16 15 C 0.13 3.70 6.34 85.63 0.54 4.24 16 16 N -0.57 -16.62 2.11 -767.05 -1.62 -18.24 16 17 C 0.58 14.98 8.02 86.82 0.70 15.68 16 18 O -0.47 -13.74 17.68 -3.53 -0.06 -13.81 16 19 C -0.13 -2.34 6.41 -20.00 -0.13 -2.47 16 20 C 0.02 0.10 10.09 22.44 0.23 0.32 16 21 C -0.05 0.04 10.03 22.36 0.22 0.26 16 22 C -0.02 -0.15 9.56 22.36 0.21 0.07 16 23 C 0.00 0.05 6.88 36.54 0.25 0.30 16 24 N 0.01 0.34 4.45 -46.06 -0.21 0.13 16 25 O -0.12 -2.84 18.46 18.89 0.35 -2.49 16 26 O -0.19 -6.73 15.77 26.06 0.41 -6.32 16 27 C -0.10 -2.26 6.14 -20.00 -0.12 -2.39 16 28 C 0.56 17.23 7.88 86.82 0.68 17.91 16 29 O -0.44 -16.37 14.73 19.12 0.28 -16.09 16 30 H 0.08 4.77 6.07 -2.39 -0.01 4.76 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.17 3.90 7.96 -2.38 -0.02 3.88 16 35 H 0.16 3.97 7.96 -2.39 -0.02 3.95 16 36 H 0.20 -0.19 8.06 -2.91 -0.02 -0.22 16 37 H 0.23 -2.66 8.06 -2.91 -0.02 -2.68 16 38 H 0.20 -0.01 7.62 -2.91 -0.02 -0.03 16 Total: -1.00 -88.73 351.61 6.99 -81.73 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: 1.15 Total: -0.47 kcal Atomic # 6 Polarization: 24.09 SS G_CDS: 4.58 Total: 28.67 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.58 Total: -71.39 kcal Atomic # 8 Polarization: -84.49 SS G_CDS: 0.82 Total: -83.68 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -88.73 6.99 -81.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733708229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.303 kcal (2) G-P(sol) polarization free energy of solvation -88.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds