Wall clock time and date at job start Wed Apr 1 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38048 * 119.93915 * 2 1 4 4 C 1.39280 * 119.87656 * 179.97438 * 3 2 1 5 5 C 1.48470 * 120.11570 * 180.28338 * 4 3 2 6 6 N 1.34050 * 126.67352 * 359.40326 * 5 4 3 7 7 N 1.28983 * 107.26762 * 179.89943 * 6 5 4 8 8 N 1.28734 * 108.94322 * 0.37919 * 7 6 5 9 9 H 0.96996 * 125.33576 * 179.78166 * 8 7 6 10 10 N 1.28871 * 109.31587 * 359.76080 * 8 7 6 11 11 C 1.39315 * 119.77034 * 0.02562 * 4 3 2 12 12 C 1.38007 * 119.88036 * 0.02562 * 11 4 3 13 13 C 1.38296 * 119.93867 * 179.97438 * 2 1 3 14 14 S 1.76195 * 119.88374 * 359.97438 * 13 2 1 15 15 O 1.42104 * 106.40158 * 49.87601 * 14 13 2 16 16 O 1.42100 * 106.40061 * 182.79449 * 14 13 2 17 17 N 1.65593 * 107.22057 * 296.33666 * 14 13 2 18 18 C 1.36945 * 119.99796 * 278.66461 * 17 14 13 19 19 H 1.07996 * 119.99863 * 359.11000 * 18 17 14 20 20 C 1.38817 * 119.99813 * 179.11518 * 18 17 14 21 21 N 1.31618 * 119.99913 * 12.52081 * 20 18 17 22 22 Si 1.86796 * 119.99899 * 192.52576 * 20 18 17 23 23 H 1.48505 * 109.47138 * 89.99625 * 22 20 18 24 24 H 1.48498 * 109.47334 * 209.99575 * 22 20 18 25 25 H 1.48504 * 109.47016 * 330.00127 * 22 20 18 26 26 C 1.46500 * 120.00404 * 98.65780 * 17 14 13 27 27 C 1.47195 * 109.46922 * 101.13911 * 26 17 14 28 28 N 6.21035 * 50.86648 * 162.54315 * 2 1 3 29 29 H 1.09005 * 109.47053 * 262.82001 * 1 2 3 30 30 H 1.09004 * 109.46995 * 22.81462 * 1 2 3 31 31 H 1.09003 * 109.47355 * 142.82112 * 1 2 3 32 32 H 1.07995 * 120.06402 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.06528 * 179.97438 * 11 4 3 34 34 H 1.07999 * 119.94154 * 180.02562 * 12 11 4 35 35 H 0.96999 * 119.99976 * 179.97438 * 21 20 18 36 36 H 1.09000 * 109.47574 * 221.14626 * 26 17 14 37 37 H 1.09004 * 109.46942 * 341.14165 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1963 0.0000 4 6 3.5888 1.1947 0.0005 5 6 4.3351 2.4782 0.0069 6 7 3.8082 3.7108 0.0013 7 7 4.7902 4.5470 0.0123 8 7 5.8978 3.8909 0.0163 9 1 6.7837 4.2858 0.0213 10 7 5.6447 2.6273 0.0131 11 6 4.2792 -0.0153 0.0005 12 6 3.5806 -1.2055 -0.0005 13 6 2.1972 -1.1984 0.0005 14 16 1.3115 -2.7216 0.0019 15 8 0.3500 -2.6275 -1.0402 16 8 2.2869 -3.7528 0.0687 17 7 0.4590 -2.7917 1.4198 18 6 1.0806 -3.1892 2.5735 19 1 2.1231 -3.4707 2.5558 20 6 0.3707 -3.2303 3.7657 21 7 -0.9416 -3.1301 3.7539 22 14 1.2778 -3.4278 5.3866 23 1 1.6235 -2.0883 5.9268 24 1 0.4097 -4.1434 6.3558 25 1 2.5217 -4.2084 5.1658 26 6 -0.9601 -2.4284 1.4401 27 6 -1.7795 -3.6511 1.4447 28 7 -2.4125 -4.5954 1.4451 29 1 -0.3633 -0.1285 1.0197 30 1 -0.3633 0.9473 -0.3985 31 1 -0.3634 -0.8188 -0.6210 32 1 1.6561 2.1316 0.0004 33 1 5.3592 -0.0220 0.0005 34 1 4.1148 -2.1441 -0.0001 35 1 -1.4378 -3.1593 4.5869 36 1 -1.1730 -1.8449 2.3358 37 1 -1.1962 -1.8360 0.5560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737221446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:33 Heat of formation + Delta-G solvation = 134.945360 kcal Electronic energy + Delta-G solvation = -28103.947647 eV Core-core repulsion = 24013.072965 eV Total energy + Delta-G solvation = -4090.874682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -44.67316 -39.27173 -36.90314 -36.42710 -35.01370 -34.68065 -34.39613 -33.99396 -32.40518 -31.51504 -30.76400 -27.81824 -26.67118 -24.96952 -24.73025 -24.06824 -22.20094 -21.14529 -19.43265 -18.82012 -18.21810 -17.56153 -17.35676 -16.77126 -16.45012 -15.78422 -15.44275 -14.77498 -14.45918 -14.32479 -13.99312 -13.71766 -13.67937 -13.22264 -13.00210 -12.88407 -12.49107 -12.35365 -12.19628 -12.11094 -11.68539 -11.58170 -11.45955 -11.38458 -11.31879 -11.20157 -11.07567 -11.04835 -11.01986 -10.92761 -10.53141 -10.27741 -10.25386 -10.10552 -9.61371 -8.90695 -8.63600 -8.49298 -6.48393 -4.08622 0.42057 0.94368 1.19714 1.45211 1.99936 2.12677 3.11071 3.18674 3.21124 3.47089 3.53579 3.78871 3.99178 4.05783 4.21353 4.37165 4.56167 4.81309 4.85542 4.94960 5.02019 5.18413 5.24600 5.33517 5.48164 5.55908 5.68115 5.77831 5.85835 5.97719 6.01124 6.09377 6.26103 6.35463 6.37432 6.48215 6.63712 6.93960 7.00301 7.32207 7.91777 8.13125 8.57567 8.97060 9.00271 10.46276 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.003687 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.492175 B = 7592.590000 C = 8312.465013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.019 3.981 3 C -0.101 4.101 4 C 0.017 3.983 5 C 0.221 3.779 6 N -0.264 5.264 7 N -0.051 5.051 8 N -0.229 5.229 9 H 0.475 0.525 10 N -0.291 5.291 11 C -0.112 4.112 12 C -0.025 4.025 13 C -0.648 4.648 14 S 2.630 3.370 15 O -0.977 6.977 16 O -0.961 6.961 17 N -0.833 5.833 18 C -0.292 4.292 19 H 0.117 0.883 20 C 0.042 3.958 21 N -0.874 5.874 22 Si 0.923 3.077 23 H -0.275 1.275 24 H -0.282 1.282 25 H -0.268 1.268 26 C 0.219 3.781 27 C 0.267 3.733 28 N -0.489 5.489 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.146 0.854 35 H 0.275 0.725 36 H 0.148 0.852 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.225 14.137 -4.443 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.018 3.982 3 C -0.122 4.122 4 C 0.014 3.986 5 C -0.058 4.058 6 N -0.137 5.137 7 N -0.047 5.047 8 N -0.075 5.075 9 H 0.329 0.671 10 N -0.142 5.142 11 C -0.133 4.133 12 C -0.044 4.044 13 C -0.729 4.729 14 S 2.721 3.279 15 O -0.967 6.967 16 O -0.951 6.951 17 N -0.663 5.663 18 C -0.427 4.427 19 H 0.135 0.865 20 C -0.163 4.163 21 N -0.516 5.516 22 Si 0.749 3.251 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.192 1.192 26 C 0.090 3.910 27 C -0.052 4.052 28 N -0.170 5.170 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.298 12.875 -5.096 16.679 hybrid contribution 1.700 0.932 1.375 2.376 sum 10.998 13.807 -3.721 18.040 Atomic orbital electron populations 1.21920 0.90368 1.06171 1.05088 1.19384 0.96103 0.91098 0.91614 1.21108 0.92104 0.98689 1.00321 1.17366 0.92303 0.86676 1.02292 1.23790 0.86347 0.94406 1.01279 1.76104 1.21697 0.98445 1.17462 1.78911 0.88536 1.22406 1.14800 1.47735 1.11548 1.02048 1.46160 0.67082 1.74949 1.17808 0.99657 1.21796 1.21177 1.00277 0.90998 1.00810 1.20874 0.92319 0.98681 0.92489 1.32035 1.06547 1.22495 1.11822 1.05390 0.73214 0.75474 0.73777 1.93436 1.60498 1.87391 1.55331 1.93468 1.61186 1.53873 1.86602 1.53428 1.13489 1.73566 1.25819 1.19580 0.97767 1.40394 0.84975 0.86504 1.25192 0.95425 0.96386 0.99319 1.69802 1.05226 1.48468 1.28091 0.85962 0.79456 0.78592 0.81048 1.20046 1.20795 1.19202 1.19133 0.78149 0.89073 1.04658 1.29085 0.92591 0.94612 0.88906 1.80903 1.11489 1.10788 1.13842 0.88506 0.90023 0.87198 0.84312 0.84735 0.83586 0.91336 0.83495 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 7.87 36.01 0.28 -2.14 16 2 C 0.02 0.29 5.87 -104.67 -0.61 -0.32 16 3 C -0.10 -1.42 9.33 -39.26 -0.37 -1.78 16 4 C 0.02 0.24 5.88 -104.89 -0.62 -0.38 16 5 C 0.22 2.88 7.94 -156.30 -1.24 1.64 16 6 N -0.26 -3.45 12.23 32.16 0.39 -3.05 16 7 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 8 N -0.23 -1.83 7.90 60.35 0.48 -1.36 16 9 H 0.48 1.35 8.96 -340.37 -3.05 -1.70 16 10 N -0.29 -3.18 12.08 32.17 0.39 -2.80 16 11 C -0.11 -1.53 9.70 -39.27 -0.38 -1.91 16 12 C -0.02 -0.38 9.53 -39.63 -0.38 -0.76 16 13 C -0.65 -11.04 5.91 -39.52 -0.23 -11.27 16 14 S 2.63 52.76 5.01 -107.50 -0.54 52.23 16 15 O -0.98 -20.19 14.38 -57.17 -0.82 -21.01 16 16 O -0.96 -21.60 16.04 -57.17 -0.92 -22.51 16 17 N -0.83 -17.58 2.84 -62.77 -0.18 -17.75 16 18 C -0.29 -6.63 9.43 -15.05 -0.14 -6.77 16 19 H 0.12 2.62 7.42 -52.49 -0.39 2.23 16 20 C 0.04 0.96 5.32 -17.43 -0.09 0.87 16 21 N -0.87 -20.19 8.14 55.49 0.45 -19.73 16 22 Si 0.92 18.39 29.57 -169.99 -5.03 13.36 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 26 C 0.22 4.31 3.63 -6.83 -0.02 4.29 16 27 C 0.27 6.14 13.40 -20.74 -0.28 5.86 16 28 N -0.49 -12.13 18.54 42.18 0.78 -11.34 16 29 H 0.10 1.24 6.48 -51.93 -0.34 0.90 16 30 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 31 H 0.11 1.63 4.05 -51.93 -0.21 1.42 16 32 H 0.14 1.69 7.88 -52.49 -0.41 1.27 16 33 H 0.13 1.54 7.88 -52.48 -0.41 1.13 16 34 H 0.15 2.14 7.32 -52.49 -0.38 1.75 16 35 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 36 H 0.15 2.85 5.98 -51.93 -0.31 2.54 16 37 H 0.09 1.46 4.33 -51.93 -0.22 1.24 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -31.05 331.97 -8.54 -39.60 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.29 Total: 1.80 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -4.08 Total: -12.68 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 3.13 Total: -55.78 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -1.74 Total: -43.53 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: 52.76 SS G_CDS: -0.54 Total: 52.23 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.05 -8.54 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737221446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.542 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds