Wall clock time and date at job start Wed Apr 1 2020 05:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38048 * 119.93915 * 2 1 4 4 C 1.39280 * 119.87656 * 179.97438 * 3 2 1 5 5 C 1.48470 * 120.11570 * 180.28338 * 4 3 2 6 6 N 1.34050 * 126.67352 * 359.40326 * 5 4 3 7 7 N 1.28983 * 107.26762 * 179.89943 * 6 5 4 8 8 N 1.28734 * 108.94322 * 0.37919 * 7 6 5 9 9 H 0.96996 * 125.33576 * 179.78166 * 8 7 6 10 10 N 1.28871 * 109.31587 * 359.76080 * 8 7 6 11 11 C 1.39315 * 119.77034 * 0.02562 * 4 3 2 12 12 C 1.38007 * 119.88036 * 0.02562 * 11 4 3 13 13 C 1.38296 * 119.93867 * 179.97438 * 2 1 3 14 14 S 1.76195 * 119.88374 * 359.97438 * 13 2 1 15 15 O 1.42104 * 106.40158 * 49.87601 * 14 13 2 16 16 O 1.42100 * 106.40061 * 182.79449 * 14 13 2 17 17 N 1.65593 * 107.22057 * 296.33666 * 14 13 2 18 18 C 1.36945 * 119.99796 * 278.66461 * 17 14 13 19 19 H 1.07996 * 119.99863 * 359.11000 * 18 17 14 20 20 C 1.38817 * 119.99813 * 179.11518 * 18 17 14 21 21 N 1.31618 * 119.99913 * 12.52081 * 20 18 17 22 22 Si 1.86796 * 119.99899 * 192.52576 * 20 18 17 23 23 H 1.48505 * 109.47138 * 89.99625 * 22 20 18 24 24 H 1.48498 * 109.47334 * 209.99575 * 22 20 18 25 25 H 1.48504 * 109.47016 * 330.00127 * 22 20 18 26 26 C 1.46500 * 120.00404 * 98.65780 * 17 14 13 27 27 C 1.47195 * 109.46922 * 101.13911 * 26 17 14 28 28 N 6.21035 * 50.86648 * 162.54315 * 2 1 3 29 29 H 1.09005 * 109.47053 * 262.82001 * 1 2 3 30 30 H 1.09004 * 109.46995 * 22.81462 * 1 2 3 31 31 H 1.09003 * 109.47355 * 142.82112 * 1 2 3 32 32 H 1.07995 * 120.06402 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.06528 * 179.97438 * 11 4 3 34 34 H 1.07999 * 119.94154 * 180.02562 * 12 11 4 35 35 H 0.96999 * 119.99976 * 179.97438 * 21 20 18 36 36 H 1.09000 * 109.47574 * 221.14626 * 26 17 14 37 37 H 1.09004 * 109.46942 * 341.14165 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1963 0.0000 4 6 3.5888 1.1947 0.0005 5 6 4.3351 2.4782 0.0069 6 7 3.8082 3.7108 0.0013 7 7 4.7902 4.5470 0.0123 8 7 5.8978 3.8909 0.0163 9 1 6.7837 4.2858 0.0213 10 7 5.6447 2.6273 0.0131 11 6 4.2792 -0.0153 0.0005 12 6 3.5806 -1.2055 -0.0005 13 6 2.1972 -1.1984 0.0005 14 16 1.3115 -2.7216 0.0019 15 8 0.3500 -2.6275 -1.0402 16 8 2.2869 -3.7528 0.0687 17 7 0.4590 -2.7917 1.4198 18 6 1.0806 -3.1892 2.5735 19 1 2.1231 -3.4707 2.5558 20 6 0.3707 -3.2303 3.7657 21 7 -0.9416 -3.1301 3.7539 22 14 1.2778 -3.4278 5.3866 23 1 1.6235 -2.0883 5.9268 24 1 0.4097 -4.1434 6.3558 25 1 2.5217 -4.2084 5.1658 26 6 -0.9601 -2.4284 1.4401 27 6 -1.7795 -3.6511 1.4447 28 7 -2.4125 -4.5954 1.4451 29 1 -0.3633 -0.1285 1.0197 30 1 -0.3633 0.9473 -0.3985 31 1 -0.3634 -0.8188 -0.6210 32 1 1.6561 2.1316 0.0004 33 1 5.3592 -0.0220 0.0005 34 1 4.1148 -2.1441 -0.0001 35 1 -1.4378 -3.1593 4.5869 36 1 -1.1730 -1.8449 2.3358 37 1 -1.1962 -1.8360 0.5560 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737221446.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:32 Heat of formation + Delta-G solvation = 113.042831 kcal Electronic energy + Delta-G solvation = -28104.897412 eV Core-core repulsion = 24013.072965 eV Total energy + Delta-G solvation = -4091.824447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -45.52607 -40.44415 -38.55261 -38.13870 -36.76937 -36.19891 -35.58246 -34.96928 -33.57385 -33.06910 -31.87570 -29.35497 -27.86823 -26.03737 -25.76696 -25.57775 -23.30385 -22.27609 -20.50206 -20.19051 -19.85799 -19.08596 -18.31606 -18.19256 -17.81164 -17.13856 -16.79567 -16.37105 -15.87093 -15.53269 -15.29831 -15.03565 -14.95949 -14.69457 -14.26663 -14.06958 -13.94067 -13.68762 -13.49084 -13.29856 -13.24256 -13.08704 -12.98893 -12.94899 -12.73661 -12.57874 -12.44394 -12.41350 -12.16160 -12.07939 -12.02164 -11.89188 -11.85074 -11.61605 -11.21120 -10.18057 -10.03320 -9.77001 -8.09822 -5.82779 -0.72933 -0.37903 0.09624 0.31234 1.07784 1.36753 1.52002 1.55837 1.62995 1.96736 2.37248 2.45174 2.51657 2.54470 2.73151 2.92781 3.06592 3.16809 3.50382 3.79885 3.83844 3.89675 4.03331 4.20934 4.29383 4.35663 4.46091 4.54628 4.68227 4.84883 4.91226 5.01725 5.08342 5.24791 5.28891 5.36561 5.43461 5.57976 5.68907 5.78127 6.47426 6.94713 7.05383 7.18790 7.35309 8.84457 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.003687 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.492175 B = 7592.590000 C = 8312.465013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.020 3.980 3 C -0.101 4.101 4 C 0.027 3.973 5 C 0.204 3.796 6 N -0.283 5.283 7 N -0.053 5.053 8 N -0.197 5.197 9 H 0.496 0.504 10 N -0.285 5.285 11 C -0.107 4.107 12 C -0.031 4.031 13 C -0.661 4.661 14 S 2.676 3.324 15 O -0.984 6.984 16 O -0.992 6.992 17 N -0.858 5.858 18 C -0.321 4.321 19 H 0.109 0.891 20 C 0.008 3.992 21 N -0.908 5.908 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.222 3.778 27 C 0.271 3.729 28 N -0.533 5.533 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.268 0.732 36 H 0.155 0.845 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.389 17.265 -5.509 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.018 3.982 3 C -0.121 4.121 4 C 0.023 3.977 5 C -0.076 4.076 6 N -0.156 5.156 7 N -0.048 5.048 8 N -0.048 5.048 9 H 0.356 0.644 10 N -0.138 5.138 11 C -0.128 4.128 12 C -0.050 4.050 13 C -0.750 4.750 14 S 2.771 3.229 15 O -0.974 6.974 16 O -0.982 6.982 17 N -0.689 5.689 18 C -0.451 4.451 19 H 0.127 0.873 20 C -0.193 4.193 21 N -0.550 5.550 22 Si 0.797 3.203 23 H -0.191 1.191 24 H -0.221 1.221 25 H -0.197 1.197 26 C 0.094 3.906 27 C -0.047 4.047 28 N -0.215 5.215 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.178 0.822 33 H 0.177 0.823 34 H 0.168 0.832 35 H 0.079 0.921 36 H 0.172 0.828 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.442 15.947 -6.066 20.543 hybrid contribution 1.332 0.198 1.351 1.907 sum 12.773 16.145 -4.715 21.120 Atomic orbital electron populations 1.22031 0.89246 1.07569 1.05504 1.19607 0.97049 0.90822 0.90681 1.21305 0.92352 0.98843 0.99638 1.17563 0.92564 0.87335 1.00222 1.23615 0.86934 0.94127 1.02935 1.76091 1.22712 0.98550 1.18223 1.78875 0.88853 1.22092 1.14946 1.47810 1.12231 1.01155 1.43615 0.64450 1.74907 1.16951 1.00758 1.21155 1.21344 1.01459 0.90049 0.99936 1.21016 0.91706 0.99931 0.92373 1.31071 1.07004 1.20160 1.16716 1.02243 0.72992 0.75148 0.72537 1.93458 1.61048 1.87784 1.55144 1.93452 1.62353 1.55572 1.86825 1.52961 1.14634 1.77371 1.23973 1.19498 0.97000 1.43524 0.85123 0.87336 1.25594 0.95949 0.96777 1.00993 1.69875 1.05619 1.51861 1.27677 0.85244 0.77994 0.78501 0.78554 1.19123 1.22079 1.19656 1.19529 0.76932 0.87762 1.06415 1.30039 0.92011 0.95017 0.87632 1.80870 1.12846 1.12260 1.15484 0.87782 0.86583 0.88611 0.82202 0.82257 0.83170 0.92140 0.82808 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.57 7.87 71.24 0.56 -4.01 16 2 C 0.02 0.56 5.87 -19.89 -0.12 0.44 16 3 C -0.10 -2.48 9.33 22.48 0.21 -2.27 16 4 C 0.03 0.65 5.88 -20.04 -0.12 0.53 16 5 C 0.20 4.58 7.94 137.38 1.09 5.67 16 6 N -0.28 -6.46 12.23 -52.18 -0.64 -7.10 16 7 N -0.05 -0.95 13.47 37.02 0.50 -0.45 16 8 N -0.20 -2.39 7.90 37.02 0.29 -2.10 16 9 H 0.50 0.80 8.96 -347.54 -3.12 -2.31 16 10 N -0.29 -5.15 12.08 -52.12 -0.63 -5.78 16 11 C -0.11 -2.61 9.70 22.47 0.22 -2.39 16 12 C -0.03 -0.90 9.53 22.24 0.21 -0.69 16 13 C -0.66 -21.42 5.91 22.31 0.13 -21.29 16 14 S 2.68 106.14 5.01 -56.49 -0.28 105.85 16 15 O -0.98 -39.79 14.38 -128.00 -1.84 -41.63 16 16 O -0.99 -44.70 16.04 -128.00 -2.05 -46.76 16 17 N -0.86 -36.47 2.84 -352.51 -1.00 -37.47 16 18 C -0.32 -14.95 9.43 84.03 0.79 -14.15 16 19 H 0.11 5.03 7.42 -2.91 -0.02 5.01 16 20 C 0.01 0.35 5.32 84.86 0.45 0.81 16 21 N -0.91 -43.34 8.14 21.65 0.18 -43.16 16 22 Si 0.97 38.79 29.57 68.60 2.03 40.82 16 23 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 24 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 C 0.22 8.80 3.63 84.57 0.31 9.11 16 27 C 0.27 12.75 13.40 89.43 1.20 13.95 16 28 N -0.53 -27.22 18.54 20.01 0.37 -26.84 16 29 H 0.10 2.44 6.48 -2.38 -0.02 2.42 16 30 H 0.12 2.01 8.03 -2.38 -0.02 1.99 16 31 H 0.10 2.63 4.05 -2.39 -0.01 2.62 16 32 H 0.16 3.26 7.88 -2.91 -0.02 3.24 16 33 H 0.16 3.05 7.88 -2.91 -0.02 3.03 16 34 H 0.15 4.19 7.32 -2.91 -0.02 4.16 16 35 H 0.27 12.60 8.31 -92.71 -0.77 11.83 16 36 H 0.16 6.03 5.98 -2.39 -0.01 6.02 16 37 H 0.12 3.89 4.33 -2.38 -0.01 3.88 16 Total: -1.00 -67.91 331.97 -0.06 -67.98 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -1.92 Total: 10.92 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 4.94 Total: -14.28 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -0.93 Total: -122.90 kcal Atomic # 8 Polarization: -84.49 SS G_CDS: -3.89 Total: -88.38 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Atomic # 16 Polarization: 106.14 SS G_CDS: -0.28 Total: 105.85 kcal Total: -67.91 -0.06 -67.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737221446.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.019 kcal (2) G-P(sol) polarization free energy of solvation -67.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds