Wall clock time and date at job start Wed Apr 1 2020 05:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38332 * 119.88386 * 2 1 4 4 C 1.38007 * 120.11817 * 180.27890 * 3 2 1 5 5 C 1.39316 * 119.87962 * 359.74261 * 4 3 2 6 6 C 1.48466 * 120.11551 * 180.02562 * 5 4 3 7 7 N 1.34047 * 126.67618 * 179.66417 * 6 5 4 8 8 N 1.28985 * 107.27211 * 179.83600 * 7 6 5 9 9 N 1.28730 * 108.93731 * 0.43447 * 8 7 6 10 10 H 0.97007 * 125.33722 * 179.74153 * 9 8 7 11 11 N 1.28866 * 109.32271 * 359.72532 * 9 8 7 12 12 C 1.39276 * 119.76907 * 0.02562 * 5 4 3 13 13 C 1.38054 * 119.87980 * 359.97438 * 12 5 4 14 14 S 1.76202 * 119.93966 * 179.97438 * 13 12 5 15 15 O 1.42097 * 106.40446 * 1.45970 * 14 13 12 16 16 O 1.42102 * 106.39950 * 228.54133 * 14 13 12 17 17 N 1.65600 * 107.21634 * 115.00000 * 14 13 12 18 18 C 1.36942 * 119.99932 * 89.99897 * 17 14 13 19 19 H 1.08001 * 119.99696 * 8.34101 * 18 17 14 20 20 C 1.38811 * 120.00186 * 188.33647 * 18 17 14 21 21 N 1.31617 * 119.99569 * 25.02044 * 20 18 17 22 22 Si 1.86801 * 119.99992 * 205.02640 * 20 18 17 23 23 H 1.48493 * 109.47103 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47130 * 120.00113 * 22 20 18 25 25 H 1.48502 * 109.46749 * 239.99929 * 22 20 18 26 26 C 1.46492 * 120.00089 * 269.99444 * 17 14 13 27 27 C 1.47207 * 109.46950 * 93.11188 * 26 17 14 28 28 N 4.40602 * 100.49142 * 111.39110 * 2 1 3 29 29 H 1.08998 * 109.46959 * 270.23215 * 1 2 3 30 30 H 1.08998 * 109.46869 * 30.23553 * 1 2 3 31 31 H 1.09000 * 109.46911 * 150.23370 * 1 2 3 32 32 H 1.08007 * 119.93814 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.05877 * 179.76836 * 4 3 2 34 34 H 1.08002 * 120.06344 * 180.02562 * 12 5 4 35 35 H 0.97001 * 119.99706 * 179.97438 * 21 20 18 36 36 H 1.09005 * 109.47368 * 213.10470 * 26 17 14 37 37 H 1.09002 * 109.47683 * 333.11141 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1963 1.1994 0.0000 4 6 3.5763 1.2050 -0.0058 5 6 4.2753 -0.0001 -0.0063 6 6 5.7600 -0.0001 -0.0119 7 7 6.5606 -1.0752 -0.0067 8 7 7.7772 -0.6467 -0.0182 9 7 7.7667 0.6405 -0.0210 10 1 8.5535 1.2080 -0.0255 11 7 6.5473 1.0571 -0.0172 12 6 3.5765 -1.2048 -0.0014 13 6 2.1960 -1.1991 0.0044 14 16 1.3103 -2.7223 0.0099 15 8 2.2867 -3.7542 0.0418 16 8 0.3241 -2.6167 -1.0077 17 7 0.4920 -2.8084 1.4471 18 6 -0.7776 -2.3042 1.5434 19 1 -1.2961 -1.9738 0.6555 20 6 -1.3980 -2.2179 2.7821 21 7 -0.6724 -2.1359 3.8771 22 14 -3.2626 -2.2182 2.8948 23 1 -3.8409 -2.3184 1.5308 24 1 -3.7091 -3.3773 3.7087 25 1 -3.7200 -0.9586 3.5346 26 6 1.1263 -3.4238 2.6154 27 6 1.7941 -2.3843 3.4157 28 7 2.3093 -1.5802 4.0339 29 1 -0.3633 0.0042 1.0276 30 1 -0.3633 0.8879 -0.5175 31 1 -0.3633 -0.8921 -0.5102 32 1 1.6533 2.1331 -0.0004 33 1 4.1135 2.1420 -0.0096 34 1 4.1136 -2.1418 -0.0013 35 1 -1.1060 -2.0752 4.7427 36 1 0.3678 -3.9182 3.2223 37 1 1.8622 -4.1570 2.2853 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737296212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:38 Heat of formation + Delta-G solvation = 127.182426 kcal Electronic energy + Delta-G solvation = -28639.066114 eV Core-core repulsion = 24547.854805 eV Total energy + Delta-G solvation = -4091.211309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.41462 -39.00404 -36.80429 -36.25130 -34.68760 -34.48846 -34.43268 -33.76967 -31.85390 -31.58626 -30.84595 -27.77300 -26.87658 -24.70508 -24.25262 -23.31537 -22.52337 -21.07035 -19.25855 -18.74431 -18.06282 -17.40837 -17.10902 -16.67625 -16.17311 -15.33603 -15.23727 -14.68375 -14.51549 -14.35354 -13.97977 -13.62832 -13.37712 -13.25739 -13.02632 -12.46759 -12.31665 -12.13907 -12.02834 -11.89052 -11.76466 -11.52219 -11.33268 -11.29757 -11.13080 -11.12044 -10.99109 -10.96225 -10.76183 -10.59747 -10.53367 -10.28626 -10.10323 -9.92948 -9.58405 -8.90352 -8.55796 -8.21533 -6.84967 -4.18970 0.83325 1.21080 1.38022 1.56525 2.23118 2.45472 2.98311 3.08870 3.15469 3.60210 3.76148 3.89240 3.92860 4.12682 4.26128 4.44518 4.50926 4.82436 5.07168 5.20334 5.24633 5.30394 5.44519 5.46210 5.60535 5.77434 5.91113 6.05518 6.09649 6.20256 6.33202 6.37369 6.43967 6.50690 6.55740 6.68608 6.83190 6.91606 7.08909 7.19513 7.95129 8.17567 8.36447 8.78144 8.86751 10.13770 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.016509 B = 0.003937 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.647782 B = 7110.423646 C = 7233.851513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.154 4.154 4 C -0.041 4.041 5 C -0.065 4.065 6 C 0.235 3.765 7 N -0.266 5.266 8 N -0.053 5.053 9 N -0.233 5.233 10 H 0.473 0.527 11 N -0.303 5.303 12 C 0.017 3.983 13 C -0.674 4.674 14 S 2.543 3.457 15 O -0.989 6.989 16 O -0.972 6.972 17 N -0.798 5.798 18 C -0.253 4.253 19 H 0.133 0.867 20 C 0.033 3.967 21 N -0.832 5.832 22 Si 0.931 3.069 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.279 1.279 26 C 0.227 3.773 27 C 0.241 3.759 28 N -0.475 5.475 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.146 0.854 35 H 0.282 0.718 36 H 0.133 0.867 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.134 4.659 -4.021 8.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.050 3.950 3 C -0.173 4.173 4 C -0.061 4.061 5 C -0.069 4.069 6 C -0.045 4.045 7 N -0.139 5.139 8 N -0.048 5.048 9 N -0.079 5.079 10 H 0.326 0.674 11 N -0.155 5.155 12 C -0.004 4.004 13 C -0.751 4.751 14 S 2.641 3.359 15 O -0.979 6.979 16 O -0.962 6.962 17 N -0.621 5.621 18 C -0.399 4.399 19 H 0.151 0.849 20 C -0.180 4.180 21 N -0.471 5.471 22 Si 0.756 3.244 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.205 1.205 26 C 0.098 3.902 27 C -0.078 4.078 28 N -0.155 5.155 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.761 4.963 -3.785 9.202 hybrid contribution -0.348 1.532 0.396 1.620 sum 6.413 6.494 -3.389 9.736 Atomic orbital electron populations 1.22031 0.89929 1.05745 1.05468 1.19780 0.96616 0.91462 0.87122 1.21057 0.93538 0.98180 1.04518 1.21172 0.94329 0.96599 0.93989 1.17255 0.84026 0.95192 1.10394 1.23733 0.96461 0.84082 1.00199 1.76146 0.94511 1.25512 1.17708 1.78891 1.17190 0.93875 1.14837 1.47679 1.07621 1.05909 1.46646 0.67356 1.74897 0.90636 1.26832 1.23096 1.20919 0.92607 0.97562 0.89359 1.32230 1.05245 1.23996 1.13649 1.11013 0.72457 0.75409 0.77019 1.93370 1.61250 1.55873 1.87393 1.93328 1.58037 1.86706 1.58095 1.55210 1.18428 1.62267 1.26183 1.20348 0.84257 1.39314 0.96001 0.84947 1.25578 1.01564 0.95975 0.94853 1.69937 1.36601 1.41248 0.99288 0.85760 0.80699 0.78382 0.79593 1.18190 1.19852 1.20488 1.18950 0.96569 0.89126 0.85585 1.29532 0.90014 0.94723 0.93506 1.80944 1.14786 1.09764 1.10054 0.87698 0.91552 0.86678 0.85268 0.85306 0.83665 0.90681 0.84989 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.00 36.01 0.29 -2.78 16 2 C 0.05 0.97 5.88 -104.56 -0.61 0.36 16 3 C -0.15 -2.53 9.68 -39.63 -0.38 -2.91 16 4 C -0.04 -0.66 9.70 -39.27 -0.38 -1.04 16 5 C -0.06 -1.16 5.88 -104.89 -0.62 -1.78 16 6 C 0.23 3.96 7.94 -156.30 -1.24 2.72 16 7 N -0.27 -4.59 12.23 32.16 0.39 -4.19 16 8 N -0.05 -0.74 13.47 60.35 0.81 0.07 16 9 N -0.23 -2.54 7.90 60.35 0.48 -2.06 16 10 H 0.47 2.53 8.96 -340.37 -3.05 -0.52 16 11 N -0.30 -4.24 12.08 32.17 0.39 -3.85 16 12 C 0.02 0.33 9.20 -39.26 -0.36 -0.03 16 13 C -0.67 -13.63 5.90 -39.63 -0.23 -13.86 16 14 S 2.54 53.83 5.17 -107.50 -0.56 53.28 16 15 O -0.99 -22.09 15.53 -57.17 -0.89 -22.98 16 16 O -0.97 -21.80 14.39 -57.17 -0.82 -22.62 16 17 N -0.80 -16.43 2.88 -62.77 -0.18 -16.61 16 18 C -0.25 -5.19 6.79 -15.06 -0.10 -5.29 16 19 H 0.13 2.65 5.54 -52.49 -0.29 2.36 16 20 C 0.03 0.66 4.90 -17.43 -0.09 0.58 16 21 N -0.83 -17.77 8.98 55.49 0.50 -17.27 16 22 Si 0.93 16.25 29.62 -169.99 -5.04 11.21 16 23 H -0.26 -4.45 7.11 56.52 0.40 -4.05 16 24 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 25 H -0.28 -5.02 7.11 56.52 0.40 -4.61 16 26 C 0.23 4.42 5.45 -6.83 -0.04 4.38 16 27 C 0.24 5.26 13.25 -20.70 -0.27 4.98 16 28 N -0.47 -11.23 18.55 42.22 0.78 -10.45 16 29 H 0.10 1.91 6.72 -51.93 -0.35 1.56 16 30 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.12 2.17 3.48 -51.93 -0.18 1.99 16 32 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.13 1.75 7.88 -52.49 -0.41 1.34 16 34 H 0.15 2.89 7.16 -52.49 -0.38 2.51 16 35 H 0.28 5.82 8.31 -40.82 -0.34 5.48 16 36 H 0.13 2.44 6.52 -51.93 -0.34 2.10 16 37 H 0.10 1.78 6.95 -51.93 -0.36 1.42 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -29.62 332.36 -8.50 -38.13 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.34 Total: 7.01 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -4.04 Total: -14.68 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 3.17 Total: -54.35 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.71 Total: -45.61 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -5.04 Total: 11.21 kcal Atomic # 16 Polarization: 53.83 SS G_CDS: -0.56 Total: 53.28 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.62 -8.50 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737296212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.308 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds