Wall clock time and date at job start Wed Apr 1 2020 05:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38332 * 119.88386 * 2 1 4 4 C 1.38007 * 120.11817 * 180.27890 * 3 2 1 5 5 C 1.39316 * 119.87962 * 359.74261 * 4 3 2 6 6 C 1.48466 * 120.11551 * 180.02562 * 5 4 3 7 7 N 1.34047 * 126.67618 * 179.66417 * 6 5 4 8 8 N 1.28985 * 107.27211 * 179.83600 * 7 6 5 9 9 N 1.28730 * 108.93731 * 0.43447 * 8 7 6 10 10 H 0.97007 * 125.33722 * 179.74153 * 9 8 7 11 11 N 1.28866 * 109.32271 * 359.72532 * 9 8 7 12 12 C 1.39276 * 119.76907 * 0.02562 * 5 4 3 13 13 C 1.38054 * 119.87980 * 359.97438 * 12 5 4 14 14 S 1.76202 * 119.93966 * 179.97438 * 13 12 5 15 15 O 1.42097 * 106.40446 * 1.45970 * 14 13 12 16 16 O 1.42102 * 106.39950 * 228.54133 * 14 13 12 17 17 N 1.65600 * 107.21634 * 115.00000 * 14 13 12 18 18 C 1.36942 * 119.99932 * 89.99897 * 17 14 13 19 19 H 1.08001 * 119.99696 * 8.34101 * 18 17 14 20 20 C 1.38811 * 120.00186 * 188.33647 * 18 17 14 21 21 N 1.31617 * 119.99569 * 25.02044 * 20 18 17 22 22 Si 1.86801 * 119.99992 * 205.02640 * 20 18 17 23 23 H 1.48493 * 109.47103 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47130 * 120.00113 * 22 20 18 25 25 H 1.48502 * 109.46749 * 239.99929 * 22 20 18 26 26 C 1.46492 * 120.00089 * 269.99444 * 17 14 13 27 27 C 1.47207 * 109.46950 * 93.11188 * 26 17 14 28 28 N 4.40602 * 100.49142 * 111.39110 * 2 1 3 29 29 H 1.08998 * 109.46959 * 270.23215 * 1 2 3 30 30 H 1.08998 * 109.46869 * 30.23553 * 1 2 3 31 31 H 1.09000 * 109.46911 * 150.23370 * 1 2 3 32 32 H 1.08007 * 119.93814 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.05877 * 179.76836 * 4 3 2 34 34 H 1.08002 * 120.06344 * 180.02562 * 12 5 4 35 35 H 0.97001 * 119.99706 * 179.97438 * 21 20 18 36 36 H 1.09005 * 109.47368 * 213.10470 * 26 17 14 37 37 H 1.09002 * 109.47683 * 333.11141 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1963 1.1994 0.0000 4 6 3.5763 1.2050 -0.0058 5 6 4.2753 -0.0001 -0.0063 6 6 5.7600 -0.0001 -0.0119 7 7 6.5606 -1.0752 -0.0067 8 7 7.7772 -0.6467 -0.0182 9 7 7.7667 0.6405 -0.0210 10 1 8.5535 1.2080 -0.0255 11 7 6.5473 1.0571 -0.0172 12 6 3.5765 -1.2048 -0.0014 13 6 2.1960 -1.1991 0.0044 14 16 1.3103 -2.7223 0.0099 15 8 2.2867 -3.7542 0.0418 16 8 0.3241 -2.6167 -1.0077 17 7 0.4920 -2.8084 1.4471 18 6 -0.7776 -2.3042 1.5434 19 1 -1.2961 -1.9738 0.6555 20 6 -1.3980 -2.2179 2.7821 21 7 -0.6724 -2.1359 3.8771 22 14 -3.2626 -2.2182 2.8948 23 1 -3.8409 -2.3184 1.5308 24 1 -3.7091 -3.3773 3.7087 25 1 -3.7200 -0.9586 3.5346 26 6 1.1263 -3.4238 2.6154 27 6 1.7941 -2.3843 3.4157 28 7 2.3093 -1.5802 4.0339 29 1 -0.3633 0.0042 1.0276 30 1 -0.3633 0.8879 -0.5175 31 1 -0.3633 -0.8921 -0.5102 32 1 1.6533 2.1331 -0.0004 33 1 4.1135 2.1420 -0.0096 34 1 4.1136 -2.1418 -0.0013 35 1 -1.1060 -2.0752 4.7427 36 1 0.3678 -3.9182 3.2223 37 1 1.8622 -4.1570 2.2853 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737296212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:36 Heat of formation + Delta-G solvation = 106.848031 kcal Electronic energy + Delta-G solvation = -28639.947879 eV Core-core repulsion = 24547.854805 eV Total energy + Delta-G solvation = -4092.093074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -45.55738 -40.35251 -38.43598 -37.91993 -36.37941 -36.20095 -35.66236 -34.99110 -33.46240 -32.87245 -32.20847 -29.33964 -28.24299 -25.89092 -25.83679 -24.57307 -23.87809 -22.40624 -20.45390 -20.26416 -19.67746 -18.88529 -18.26087 -18.23217 -17.74646 -16.81348 -16.63019 -16.21210 -16.00602 -15.76682 -15.28849 -15.12712 -14.81082 -14.67279 -14.54325 -14.05410 -13.64275 -13.52219 -13.46860 -13.37725 -13.24809 -13.11688 -12.91627 -12.74607 -12.56009 -12.48958 -12.39442 -12.32163 -12.26932 -12.03170 -11.88734 -11.84270 -11.68157 -11.50497 -11.09646 -10.29691 -10.14469 -9.56183 -8.44264 -5.81598 -0.43482 -0.18817 0.04229 0.12556 1.15657 1.34447 1.58940 1.67369 1.78990 1.97949 2.34726 2.43393 2.52403 2.56149 2.82465 2.91531 3.05509 3.22474 3.66615 3.73977 3.89678 3.94010 3.96632 4.20086 4.33140 4.40522 4.51912 4.60794 4.74457 4.87339 4.88371 4.98205 5.09765 5.21404 5.23869 5.37066 5.45217 5.54738 5.56386 5.85050 6.34845 6.75522 7.01798 7.13819 7.16957 8.54262 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.016509 B = 0.003937 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.647782 B = 7110.423646 C = 7233.851513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.031 3.969 3 C -0.149 4.149 4 C -0.036 4.036 5 C -0.070 4.070 6 C 0.215 3.785 7 N -0.302 5.302 8 N -0.053 5.053 9 N -0.196 5.196 10 H 0.496 0.504 11 N -0.289 5.289 12 C -0.006 4.006 13 C -0.692 4.692 14 S 2.540 3.460 15 O -1.010 7.010 16 O -0.991 6.991 17 N -0.799 5.799 18 C -0.256 4.256 19 H 0.137 0.863 20 C 0.010 3.990 21 N -0.851 5.851 22 Si 0.989 3.011 23 H -0.254 1.254 24 H -0.272 1.272 25 H -0.283 1.283 26 C 0.224 3.776 27 C 0.255 3.745 28 N -0.511 5.511 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.131 0.869 35 H 0.284 0.716 36 H 0.144 0.856 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.951 6.564 -4.044 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.029 3.971 3 C -0.167 4.167 4 C -0.056 4.056 5 C -0.074 4.074 6 C -0.065 4.065 7 N -0.174 5.174 8 N -0.048 5.048 9 N -0.048 5.048 10 H 0.356 0.644 11 N -0.142 5.142 12 C -0.027 4.027 13 C -0.771 4.771 14 S 2.641 3.359 15 O -1.000 7.000 16 O -0.981 6.981 17 N -0.621 5.621 18 C -0.403 4.403 19 H 0.154 0.846 20 C -0.201 4.201 21 N -0.491 5.491 22 Si 0.811 3.189 23 H -0.177 1.177 24 H -0.197 1.197 25 H -0.210 1.210 26 C 0.095 3.905 27 C -0.064 4.064 28 N -0.192 5.192 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.183 0.817 33 H 0.177 0.823 34 H 0.149 0.851 35 H 0.095 0.905 36 H 0.161 0.839 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.616 6.838 -3.830 10.257 hybrid contribution -0.169 1.052 0.414 1.143 sum 6.448 7.890 -3.416 10.747 Atomic orbital electron populations 1.21958 0.89338 1.06515 1.04961 1.20054 0.97302 0.91844 0.87858 1.21472 0.93835 0.98711 1.02680 1.21535 0.94473 0.97035 0.92522 1.17437 0.84967 0.95253 1.09760 1.23628 0.96350 0.84710 1.01809 1.76138 0.95469 1.26632 1.19148 1.78829 1.16088 0.94837 1.15040 1.47753 1.07818 1.05505 1.43684 0.64425 1.74836 0.91192 1.25833 1.22360 1.20872 0.92688 0.97989 0.91150 1.32048 1.05509 1.24240 1.15304 1.11265 0.72058 0.75406 0.77144 1.93320 1.61835 1.57181 1.87702 1.93287 1.58631 1.87087 1.59091 1.55385 1.18318 1.62246 1.26164 1.20638 0.84011 1.39216 0.96465 0.84613 1.26205 1.04538 0.95116 0.94228 1.69992 1.37891 1.41500 0.99681 0.84902 0.76504 0.77913 0.79547 1.17688 1.19690 1.20953 1.19233 0.97202 0.88788 0.85292 1.29965 0.89181 0.94418 0.92808 1.80926 1.16034 1.10901 1.11347 0.88714 0.88375 0.88326 0.81670 0.82260 0.85144 0.90549 0.83893 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.83 8.00 71.24 0.57 -5.26 16 2 C 0.03 1.15 5.88 -19.83 -0.12 1.03 16 3 C -0.15 -4.54 9.68 22.24 0.22 -4.32 16 4 C -0.04 -1.08 9.70 22.47 0.22 -0.86 16 5 C -0.07 -2.50 5.88 -20.04 -0.12 -2.62 16 6 C 0.21 7.08 7.94 137.38 1.09 8.17 16 7 N -0.30 -10.38 12.23 -52.18 -0.64 -11.02 16 8 N -0.05 -1.42 13.47 37.02 0.50 -0.92 16 9 N -0.20 -3.81 7.90 37.02 0.29 -3.52 16 10 H 0.50 3.78 8.96 -347.53 -3.12 0.66 16 11 N -0.29 -7.45 12.08 -52.13 -0.63 -8.08 16 12 C -0.01 -0.23 9.20 22.48 0.21 -0.02 16 13 C -0.69 -28.43 5.90 22.24 0.13 -28.30 16 14 S 2.54 110.16 5.17 -56.49 -0.29 109.87 16 15 O -1.01 -46.77 15.53 -128.00 -1.99 -48.76 16 16 O -0.99 -45.41 14.39 -128.00 -1.84 -47.25 16 17 N -0.80 -33.12 2.88 -352.51 -1.02 -34.14 16 18 C -0.26 -10.41 6.79 84.03 0.57 -9.84 16 19 H 0.14 5.39 5.54 -2.91 -0.02 5.37 16 20 C 0.01 0.39 4.90 84.86 0.42 0.80 16 21 N -0.85 -35.78 8.98 21.65 0.19 -35.58 16 22 Si 0.99 32.15 29.62 68.60 2.03 34.18 16 23 H -0.25 -8.02 7.11 99.48 0.71 -7.31 16 24 H -0.27 -8.77 7.11 99.48 0.71 -8.07 16 25 H -0.28 -9.44 7.11 99.48 0.71 -8.73 16 26 C 0.22 8.75 5.45 84.58 0.46 9.21 16 27 C 0.25 11.18 13.25 89.42 1.18 12.36 16 28 N -0.51 -24.34 18.55 20.03 0.37 -23.97 16 29 H 0.09 3.38 6.72 -2.39 -0.02 3.36 16 30 H 0.10 2.60 8.08 -2.39 -0.02 2.58 16 31 H 0.10 3.71 3.48 -2.39 -0.01 3.70 16 32 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.16 3.77 7.88 -2.91 -0.02 3.74 16 34 H 0.13 5.52 7.16 -2.91 -0.02 5.49 16 35 H 0.28 11.48 8.31 -92.71 -0.77 10.70 16 36 H 0.14 5.25 6.52 -2.38 -0.02 5.24 16 37 H 0.12 4.23 6.95 -2.39 -0.02 4.22 16 Total: -1.00 -64.01 332.36 -0.11 -64.12 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -1.92 Total: 24.70 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 4.83 Total: -19.63 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -0.93 Total: -117.23 kcal Atomic # 8 Polarization: -92.18 SS G_CDS: -3.83 Total: -96.01 kcal Atomic # 14 Polarization: 32.15 SS G_CDS: 2.03 Total: 34.18 kcal Atomic # 16 Polarization: 110.16 SS G_CDS: -0.29 Total: 109.87 kcal Total: -64.01 -0.11 -64.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737296212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.970 kcal (2) G-P(sol) polarization free energy of solvation -64.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds