Wall clock time and date at job start Wed Apr 1 2020 04:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48496 * 109.47407 * 264.99403 * 3 2 1 5 5 H 1.48508 * 109.46722 * 24.99388 * 3 2 1 6 6 H 1.48496 * 109.46837 * 144.98950 * 3 2 1 7 7 C 1.38950 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00327 * 201.38898 * 7 2 1 9 9 N 1.37097 * 119.99693 * 21.39244 * 7 2 1 10 10 C 1.46505 * 120.00376 * 11.50860 * 9 7 2 11 11 C 1.50701 * 109.46870 * 264.66755 * 10 9 7 12 12 O 1.20827 * 119.99952 * 359.97438 * 11 10 9 13 13 O 1.34221 * 119.99713 * 179.97438 * 11 10 9 14 14 C 1.34780 * 120.00044 * 191.50223 * 9 7 2 15 15 O 1.21288 * 119.99675 * 359.72801 * 14 9 7 16 16 C 1.50699 * 120.00045 * 180.02562 * 14 9 7 17 17 N 1.46504 * 109.46708 * 179.73022 * 16 14 9 18 18 C 1.35762 * 119.62156 * 269.71718 * 17 16 14 19 19 C 1.35355 * 120.70111 * 179.76227 * 18 17 16 20 20 C 1.40196 * 119.94443 * 0.51688 * 19 18 17 21 21 C 1.36399 * 119.26544 * 359.74661 * 20 19 18 22 22 C 1.50704 * 120.34325 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47424 * 359.97438 * 22 21 20 24 24 F 1.39893 * 109.46970 * 119.97958 * 22 21 20 25 25 F 1.39898 * 109.47171 * 239.97904 * 22 21 20 26 26 C 1.34657 * 119.62409 * 90.00148 * 17 16 14 27 27 O 1.22057 * 119.99085 * 359.97438 * 26 17 16 28 28 H 0.97000 * 119.99984 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46445 * 24.66426 * 10 9 7 30 30 H 1.08998 * 109.47368 * 144.66699 * 10 9 7 31 31 H 0.96702 * 116.99831 * 179.97438 * 13 11 10 32 32 H 1.09004 * 109.46820 * 299.72527 * 16 14 9 33 33 H 1.08997 * 109.47438 * 59.72611 * 16 14 9 34 34 H 1.07998 * 119.65099 * 0.02562 * 18 17 16 35 35 H 1.07997 * 120.02349 * 180.28732 * 19 18 17 36 36 H 1.07995 * 120.36371 * 179.72173 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.6014 1.9854 -1.3947 5 1 1.3965 2.6809 0.5916 6 1 3.4887 1.4730 0.8033 7 6 2.0089 -1.2033 -0.0005 8 1 3.0330 -1.2357 0.3405 9 7 1.3942 -2.3495 -0.4341 10 6 0.1062 -2.2726 -1.1279 11 6 -1.0107 -2.4851 -0.1387 12 8 -0.7567 -2.6812 1.0262 13 8 -2.2874 -2.4566 -0.5517 14 6 1.9750 -3.5472 -0.2223 15 8 3.0438 -3.6105 0.3476 16 6 1.2996 -4.8070 -0.6994 17 7 2.1286 -5.9653 -0.3564 18 6 3.0626 -6.4064 -1.2374 19 6 3.8436 -7.4715 -0.9411 20 6 3.6842 -8.1373 0.2823 21 6 2.7416 -7.6959 1.1639 22 6 2.5500 -8.3931 2.4861 23 9 3.4483 -9.4611 2.5847 24 9 2.7838 -7.4893 3.5280 25 9 1.2400 -8.8762 2.5731 26 6 1.9515 -6.5837 0.8265 27 8 1.1044 -6.1783 1.6061 28 1 -0.4850 0.8400 0.0004 29 1 0.0005 -1.2910 -1.5899 30 1 0.0614 -3.0432 -1.8975 31 1 -2.9691 -2.5985 0.1193 32 1 0.3261 -4.9018 -0.2184 33 1 1.1680 -4.7617 -1.7804 34 1 3.1867 -5.8996 -2.1830 35 1 4.5864 -7.8103 -1.6481 36 1 4.3006 -8.9906 0.5238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:02 Heat of formation + Delta-G solvation = -246.316782 kcal Electronic energy + Delta-G solvation = -31823.298837 eV Core-core repulsion = 26666.696274 eV Total energy + Delta-G solvation = -5156.602563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.081 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.91045 -47.49006 -47.27730 -41.45678 -39.52846 -38.24200 -36.89353 -35.52020 -34.89943 -34.47803 -32.00029 -30.69206 -28.58125 -27.76824 -26.32095 -24.91215 -22.98872 -22.75000 -21.27475 -19.69197 -18.61155 -18.26425 -18.21383 -17.36432 -17.17298 -17.01899 -16.87695 -16.77629 -15.86911 -15.64027 -15.34478 -14.57862 -14.54723 -14.52744 -14.26056 -14.16429 -13.98055 -13.95023 -13.79295 -13.50284 -13.48770 -13.16219 -12.76123 -12.55917 -12.29835 -11.96867 -11.92375 -11.80328 -11.72651 -11.52215 -11.05787 -10.57563 -10.54637 -10.48482 -10.43315 -9.92785 -9.80515 -9.18059 -8.86622 -8.16770 -8.09372 -6.61061 -4.04814 0.49850 1.83828 2.37953 2.97509 3.01366 3.16224 3.20780 3.27726 3.41218 3.47626 3.89026 3.92492 4.08924 4.19179 4.44089 4.52819 4.64565 4.68181 4.79289 4.89974 5.01533 5.14648 5.23000 5.48020 5.64768 5.65789 5.79926 5.91929 6.29360 6.34577 6.48110 6.97225 7.38361 7.41420 7.70442 8.04456 8.16141 8.85976 8.91210 9.08953 9.55587 10.46228 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.003514 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.610417 B = 7965.092508 C = 8380.729309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.030 3.970 3 Si 0.935 3.065 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.112 0.888 9 N -0.420 5.420 10 C 0.136 3.864 11 C 0.482 3.518 12 O -0.497 6.497 13 O -0.533 6.533 14 C 0.441 3.559 15 O -0.563 6.563 16 C 0.071 3.929 17 N -0.467 5.467 18 C 0.193 3.807 19 C -0.259 4.259 20 C 0.056 3.944 21 C -0.329 4.329 22 C 0.536 3.464 23 F -0.184 7.184 24 F -0.170 7.170 25 F -0.175 7.175 26 C 0.541 3.459 27 O -0.516 6.516 28 H 0.274 0.726 29 H 0.143 0.857 30 H 0.075 0.925 31 H 0.395 0.605 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.170 0.830 35 H 0.156 0.844 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -13.229 -9.069 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.129 0.871 9 N -0.140 5.140 10 C 0.010 3.990 11 C 0.322 3.678 12 O -0.382 6.382 13 O -0.344 6.344 14 C 0.228 3.772 15 O -0.446 6.446 16 C -0.053 4.053 17 N -0.173 5.173 18 C 0.062 3.938 19 C -0.282 4.282 20 C 0.033 3.967 21 C -0.335 4.335 22 C 0.481 3.519 23 F -0.165 7.165 24 F -0.151 7.151 25 F -0.156 7.156 26 C 0.340 3.660 27 O -0.395 6.395 28 H 0.085 0.915 29 H 0.161 0.839 30 H 0.093 0.907 31 H 0.251 0.749 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.187 0.813 35 H 0.174 0.826 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.325 -12.778 -8.154 15.335 hybrid contribution -0.321 0.806 0.771 1.161 sum 2.004 -11.971 -7.383 14.207 Atomic orbital electron populations 1.69818 1.06098 1.28369 1.47724 1.25271 0.95422 1.00147 0.96417 0.85794 0.79389 0.80108 0.78609 1.20029 1.20926 1.19328 1.19792 0.98059 0.82866 1.42347 0.87053 1.43465 1.15866 1.05342 1.49306 1.20973 0.80963 1.05792 0.91308 1.23825 0.82515 0.71503 0.89974 1.90703 1.83801 1.44174 1.19491 1.84496 1.17898 1.85761 1.46264 1.19805 0.88378 0.83821 0.85152 1.90592 1.23169 1.85511 1.45337 1.22023 0.96322 0.84736 1.02269 1.45084 1.30601 1.25682 1.15922 1.22281 0.85271 0.92277 0.93997 1.20527 1.06607 1.01084 0.99948 1.21374 0.89842 0.94767 0.90675 1.20661 1.09223 1.05056 0.98559 1.17485 0.73745 0.76093 0.84586 1.93120 1.68509 1.58229 1.96658 1.93241 1.94087 1.67232 1.60562 1.93201 1.37193 1.88502 1.96698 1.16124 0.85094 0.83614 0.81167 1.91080 1.35231 1.66189 1.46957 0.91511 0.83911 0.90709 0.74876 0.86332 0.87034 0.81264 0.82650 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.05 9.27 55.50 0.51 -21.53 16 2 C 0.03 0.75 4.95 -17.47 -0.09 0.67 16 3 Si 0.93 19.73 29.60 -169.99 -5.03 14.70 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.30 -8.00 9.42 -14.93 -0.14 -8.14 16 8 H 0.11 3.11 7.31 -52.49 -0.38 2.73 16 9 N -0.42 -9.98 2.17 -116.09 -0.25 -10.24 16 10 C 0.14 2.72 4.98 -5.19 -0.03 2.69 16 11 C 0.48 10.37 6.06 36.01 0.22 10.59 16 12 O -0.50 -13.11 17.03 -18.75 -0.32 -13.43 16 13 O -0.53 -9.20 13.42 -39.23 -0.53 -9.73 16 14 C 0.44 10.15 7.51 -10.98 -0.08 10.07 16 15 O -0.56 -15.04 16.04 5.55 0.09 -14.95 16 16 C 0.07 1.23 4.43 -5.19 -0.02 1.21 16 17 N -0.47 -7.66 2.07 -121.06 -0.25 -7.91 16 18 C 0.19 2.18 10.28 -16.84 -0.17 2.00 16 19 C -0.26 -2.45 10.01 -39.87 -0.40 -2.85 16 20 C 0.06 0.64 9.48 -39.51 -0.37 0.26 16 21 C -0.33 -5.29 5.38 -104.42 -0.56 -5.86 16 22 C 0.54 8.80 3.02 36.01 0.11 8.91 16 23 F -0.18 -2.47 16.00 2.25 0.04 -2.44 16 24 F -0.17 -3.24 17.01 2.25 0.04 -3.20 16 25 F -0.17 -3.00 17.01 2.25 0.04 -2.96 16 26 C 0.54 10.53 7.33 -15.45 -0.11 10.42 16 27 O -0.52 -12.41 15.64 4.87 0.08 -12.34 16 28 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.14 2.98 6.01 -51.93 -0.31 2.67 16 30 H 0.08 1.10 6.65 -51.93 -0.35 0.76 16 31 H 0.39 5.34 9.10 45.56 0.41 5.75 16 32 H 0.12 2.24 6.82 -51.93 -0.35 1.89 16 33 H 0.11 1.28 7.27 -51.93 -0.38 0.91 16 34 H 0.17 1.21 8.03 -52.49 -0.42 0.79 16 35 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.15 1.20 7.17 -52.49 -0.38 0.83 16 LS Contribution 334.17 15.07 5.04 5.04 Total: -1.00 -38.28 334.17 -3.92 -42.20 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -1.71 Total: 6.82 kcal Atomic # 6 Polarization: 31.63 SS G_CDS: -1.65 Total: 29.97 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.01 Total: -39.68 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -0.68 Total: -50.44 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.11 Total: -8.61 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -38.28 -3.92 -42.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.117 kcal (2) G-P(sol) polarization free energy of solvation -38.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds