Wall clock time and date at job start Wed Apr 1 2020 04:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48496 * 109.47407 * 264.99403 * 3 2 1 5 5 H 1.48508 * 109.46722 * 24.99388 * 3 2 1 6 6 H 1.48496 * 109.46837 * 144.98950 * 3 2 1 7 7 C 1.38950 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00327 * 201.38898 * 7 2 1 9 9 N 1.37097 * 119.99693 * 21.39244 * 7 2 1 10 10 C 1.46505 * 120.00376 * 11.50860 * 9 7 2 11 11 C 1.50701 * 109.46870 * 264.66755 * 10 9 7 12 12 O 1.20827 * 119.99952 * 359.97438 * 11 10 9 13 13 O 1.34221 * 119.99713 * 179.97438 * 11 10 9 14 14 C 1.34780 * 120.00044 * 191.50223 * 9 7 2 15 15 O 1.21288 * 119.99675 * 359.72801 * 14 9 7 16 16 C 1.50699 * 120.00045 * 180.02562 * 14 9 7 17 17 N 1.46504 * 109.46708 * 179.73022 * 16 14 9 18 18 C 1.35762 * 119.62156 * 269.71718 * 17 16 14 19 19 C 1.35355 * 120.70111 * 179.76227 * 18 17 16 20 20 C 1.40196 * 119.94443 * 0.51688 * 19 18 17 21 21 C 1.36399 * 119.26544 * 359.74661 * 20 19 18 22 22 C 1.50704 * 120.34325 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47424 * 359.97438 * 22 21 20 24 24 F 1.39893 * 109.46970 * 119.97958 * 22 21 20 25 25 F 1.39898 * 109.47171 * 239.97904 * 22 21 20 26 26 C 1.34657 * 119.62409 * 90.00148 * 17 16 14 27 27 O 1.22057 * 119.99085 * 359.97438 * 26 17 16 28 28 H 0.97000 * 119.99984 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46445 * 24.66426 * 10 9 7 30 30 H 1.08998 * 109.47368 * 144.66699 * 10 9 7 31 31 H 0.96702 * 116.99831 * 179.97438 * 13 11 10 32 32 H 1.09004 * 109.46820 * 299.72527 * 16 14 9 33 33 H 1.08997 * 109.47438 * 59.72611 * 16 14 9 34 34 H 1.07998 * 119.65099 * 0.02562 * 18 17 16 35 35 H 1.07997 * 120.02349 * 180.28732 * 19 18 17 36 36 H 1.07995 * 120.36371 * 179.72173 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.6014 1.9854 -1.3947 5 1 1.3965 2.6809 0.5916 6 1 3.4887 1.4730 0.8033 7 6 2.0089 -1.2033 -0.0005 8 1 3.0330 -1.2357 0.3405 9 7 1.3942 -2.3495 -0.4341 10 6 0.1062 -2.2726 -1.1279 11 6 -1.0107 -2.4851 -0.1387 12 8 -0.7567 -2.6812 1.0262 13 8 -2.2874 -2.4566 -0.5517 14 6 1.9750 -3.5472 -0.2223 15 8 3.0438 -3.6105 0.3476 16 6 1.2996 -4.8070 -0.6994 17 7 2.1286 -5.9653 -0.3564 18 6 3.0626 -6.4064 -1.2374 19 6 3.8436 -7.4715 -0.9411 20 6 3.6842 -8.1373 0.2823 21 6 2.7416 -7.6959 1.1639 22 6 2.5500 -8.3931 2.4861 23 9 3.4483 -9.4611 2.5847 24 9 2.7838 -7.4893 3.5280 25 9 1.2400 -8.8762 2.5731 26 6 1.9515 -6.5837 0.8265 27 8 1.1044 -6.1783 1.6061 28 1 -0.4850 0.8400 0.0004 29 1 0.0005 -1.2910 -1.5899 30 1 0.0614 -3.0432 -1.8975 31 1 -2.9691 -2.5985 0.1193 32 1 0.3261 -4.9018 -0.2184 33 1 1.1680 -4.7617 -1.7804 34 1 3.1867 -5.8996 -2.1830 35 1 4.5864 -7.8103 -1.6481 36 1 4.3006 -8.9906 0.5238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739078299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:01 Heat of formation + Delta-G solvation = -275.126770 kcal Electronic energy + Delta-G solvation = -31824.548132 eV Core-core repulsion = 26666.696274 eV Total energy + Delta-G solvation = -5157.851858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.081 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.17477 -48.70925 -48.63090 -42.67905 -41.19869 -39.94051 -38.19612 -37.15532 -36.50011 -35.88681 -33.85866 -31.79163 -30.06470 -29.37182 -27.43996 -26.66091 -24.27832 -23.86337 -22.90296 -21.27012 -19.83748 -19.53906 -19.47450 -19.13089 -18.80488 -18.49859 -18.19664 -17.92655 -17.45920 -17.03623 -16.84136 -16.28231 -16.12446 -15.77153 -15.63936 -15.52667 -15.46899 -15.39943 -15.08335 -14.82994 -14.79513 -14.47982 -14.16690 -13.89391 -13.64806 -13.55672 -13.44524 -13.22097 -13.09072 -12.77878 -12.66034 -12.41149 -12.20539 -12.18671 -11.71320 -11.62790 -11.29924 -10.99562 -10.59476 -10.00326 -9.26067 -8.48921 -6.00463 -0.49146 0.78249 1.20109 1.31747 1.42640 1.53650 1.61075 1.74366 1.78900 2.19242 2.33209 2.48586 2.75941 2.85873 3.00940 3.05791 3.40068 3.53221 3.65584 3.73349 3.84860 3.92218 4.13321 4.24205 4.29757 4.62582 4.75491 4.89079 4.90297 5.05505 5.41432 5.46313 5.84755 5.87951 5.90950 6.28360 6.76836 7.00913 7.20005 7.37371 7.76247 8.55812 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.003514 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.610417 B = 7965.092508 C = 8380.729309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.002 3.998 3 Si 0.995 3.005 4 H -0.252 1.252 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.339 4.339 8 H 0.080 0.920 9 N -0.433 5.433 10 C 0.133 3.867 11 C 0.488 3.512 12 O -0.556 6.556 13 O -0.515 6.515 14 C 0.433 3.567 15 O -0.614 6.614 16 C 0.082 3.918 17 N -0.474 5.474 18 C 0.180 3.820 19 C -0.234 4.234 20 C 0.081 3.919 21 C -0.373 4.373 22 C 0.533 3.467 23 F -0.165 7.165 24 F -0.195 7.195 25 F -0.186 7.186 26 C 0.521 3.479 27 O -0.591 6.591 28 H 0.277 0.723 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.413 0.587 32 H 0.098 0.902 33 H 0.179 0.821 34 H 0.219 0.781 35 H 0.213 0.787 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -14.238 -12.888 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.200 4.200 3 Si 0.818 3.182 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.152 5.152 10 C 0.008 3.992 11 C 0.330 3.670 12 O -0.446 6.446 13 O -0.327 6.327 14 C 0.222 3.778 15 O -0.500 6.500 16 C -0.043 4.043 17 N -0.179 5.179 18 C 0.052 3.948 19 C -0.256 4.256 20 C 0.059 3.941 21 C -0.378 4.378 22 C 0.479 3.521 23 F -0.146 7.146 24 F -0.176 7.176 25 F -0.167 7.167 26 C 0.324 3.676 27 O -0.476 6.476 28 H 0.088 0.912 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.272 0.728 32 H 0.116 0.884 33 H 0.196 0.804 34 H 0.236 0.764 35 H 0.229 0.771 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.413 -13.811 -12.065 18.653 hybrid contribution -0.632 1.036 1.886 2.243 sum 2.781 -12.775 -10.178 16.569 Atomic orbital electron populations 1.69906 1.06785 1.29078 1.47332 1.25959 0.96190 1.02367 0.95453 0.84933 0.77452 0.76378 0.79407 1.17611 1.20698 1.20866 1.19638 0.97519 0.84952 1.44554 0.90238 1.43608 1.17023 1.05089 1.49463 1.21219 0.78884 1.07533 0.91550 1.24147 0.83774 0.69784 0.89265 1.90698 1.84816 1.47074 1.21982 1.84433 1.16956 1.84831 1.46495 1.20775 0.87739 0.85289 0.84009 1.90542 1.25492 1.86603 1.47319 1.21952 0.94577 0.82161 1.05562 1.45091 1.31739 1.25121 1.15991 1.23335 0.83761 0.92948 0.94776 1.21295 1.05813 0.99030 0.99430 1.21959 0.87400 0.94791 0.89982 1.20573 1.11847 1.05805 0.99585 1.17654 0.73609 0.76278 0.84605 1.93138 1.67682 1.57192 1.96607 1.93183 1.94216 1.68309 1.61909 1.93166 1.38185 1.88592 1.96762 1.16719 0.84899 0.84462 0.81555 1.91022 1.38522 1.68597 1.49445 0.91246 0.84565 0.84721 0.72804 0.88424 0.80357 0.76405 0.77059 0.79875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.76 9.27 21.66 0.20 -44.56 16 2 C 0.00 0.10 4.95 84.93 0.42 0.52 16 3 Si 0.99 40.71 29.60 68.60 2.03 42.74 16 4 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.34 -18.45 9.42 84.04 0.79 -17.65 16 8 H 0.08 4.72 7.31 -2.91 -0.02 4.69 16 9 N -0.43 -20.78 2.17 -639.59 -1.39 -22.17 16 10 C 0.13 5.16 4.98 85.63 0.43 5.59 16 11 C 0.49 20.89 6.06 71.24 0.43 21.33 16 12 O -0.56 -30.37 17.03 21.96 0.37 -30.00 16 13 O -0.52 -17.05 13.42 -51.33 -0.69 -17.74 16 14 C 0.43 20.11 7.51 87.66 0.66 20.77 16 15 O -0.61 -33.90 16.04 -3.06 -0.05 -33.95 16 16 C 0.08 2.73 4.43 85.63 0.38 3.11 16 17 N -0.47 -14.89 2.07 -655.06 -1.36 -16.25 16 18 C 0.18 3.26 10.28 83.42 0.86 4.12 16 19 C -0.23 -3.13 10.01 22.08 0.22 -2.91 16 20 C 0.08 1.56 9.48 22.32 0.21 1.77 16 21 C -0.37 -11.89 5.38 -19.73 -0.11 -11.99 16 22 C 0.53 18.04 3.02 71.24 0.21 18.25 16 23 F -0.16 -4.30 16.00 44.97 0.72 -3.58 16 24 F -0.19 -7.93 17.01 44.97 0.76 -7.17 16 25 F -0.19 -6.73 17.01 44.97 0.76 -5.96 16 26 C 0.52 20.80 7.33 84.82 0.62 21.43 16 27 O -0.59 -30.51 15.64 -5.50 -0.09 -30.60 16 28 H 0.28 13.17 8.31 -92.71 -0.77 12.40 16 29 H 0.14 5.51 6.01 -2.39 -0.01 5.50 16 30 H 0.14 3.47 6.65 -2.39 -0.02 3.46 16 31 H 0.41 10.71 9.10 -74.06 -0.67 10.04 16 32 H 0.10 3.74 6.82 -2.38 -0.02 3.72 16 33 H 0.18 3.27 7.27 -2.39 -0.02 3.25 16 34 H 0.22 1.67 8.03 -2.91 -0.02 1.65 16 35 H 0.21 0.55 8.06 -2.91 -0.02 0.53 16 36 H 0.18 2.10 7.17 -2.91 -0.02 2.08 16 Total: -1.00 -95.24 334.17 6.94 -88.30 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.52 Total: 16.59 kcal Atomic # 6 Polarization: 59.20 SS G_CDS: 5.13 Total: 64.33 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -2.55 Total: -82.97 kcal Atomic # 8 Polarization: -111.83 SS G_CDS: -0.45 Total: -112.28 kcal Atomic # 9 Polarization: -18.95 SS G_CDS: 2.25 Total: -16.70 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -95.24 6.94 -88.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.823 kcal (2) G-P(sol) polarization free energy of solvation -95.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds