Wall clock time and date at job start Wed Apr 1 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86809 * 119.99706 * 2 1 4 4 H 1.48498 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46944 * 299.99989 * 3 2 1 6 6 H 1.48491 * 109.47115 * 59.99992 * 3 2 1 7 7 C 1.38948 * 120.00590 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00163 * 201.65287 * 7 2 1 9 9 N 1.37097 * 120.00015 * 21.64615 * 7 2 1 10 10 C 1.46504 * 119.99862 * 16.50702 * 9 7 2 11 11 C 1.50693 * 109.47711 * 264.07038 * 10 9 7 12 12 O 1.20826 * 119.99711 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00456 * 180.02562 * 11 10 9 14 14 C 1.34770 * 120.00561 * 196.51145 * 9 7 2 15 15 O 1.21298 * 119.99705 * 359.97438 * 14 9 7 16 16 C 1.50703 * 120.00682 * 179.97438 * 14 9 7 17 17 N 1.46494 * 109.47390 * 179.97438 * 16 14 9 18 18 N 1.39868 * 125.46096 * 270.02413 * 17 16 14 19 19 C 1.30241 * 110.08820 * 179.97438 * 18 17 16 20 20 C 1.45937 * 107.78377 * 0.02562 * 19 18 17 21 21 C 1.39945 * 134.03021 * 180.02562 * 20 19 18 22 22 C 1.36466 * 119.63556 * 180.02562 * 21 20 19 23 23 C 1.38967 * 120.62404 * 359.93268 * 22 21 20 24 24 N 1.48006 * 119.58842 * 180.02562 * 23 22 21 25 25 O 1.21797 * 120.00253 * 180.02562 * 24 23 22 26 26 O 1.21802 * 119.99934 * 0.02562 * 24 23 22 27 27 C 1.36586 * 120.81890 * 0.03540 * 23 22 21 28 28 C 1.37040 * 125.45938 * 89.99794 * 17 16 14 29 29 H 0.96999 * 120.00594 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47077 * 24.07128 * 10 9 7 31 31 H 1.08997 * 109.46757 * 144.06810 * 10 9 7 32 32 H 0.96702 * 117.00275 * 180.02562 * 13 11 10 33 33 H 1.08999 * 109.46770 * 59.99538 * 16 14 9 34 34 H 1.09000 * 109.46470 * 300.00527 * 16 14 9 35 35 H 1.07995 * 126.11469 * 180.26334 * 19 18 17 36 36 H 1.08002 * 120.17920 * 359.97275 * 21 20 19 37 37 H 1.07991 * 119.68433 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.07215 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0317 -1.2363 0.3445 9 7 1.3961 -2.3486 -0.4390 10 6 0.1674 -2.2641 -1.2324 11 6 -1.0270 -2.4243 -0.3276 12 8 -0.8682 -2.5923 0.8583 13 8 -2.2672 -2.3814 -0.8392 14 6 1.9238 -3.5521 -0.1402 15 8 2.9413 -3.6220 0.5164 16 6 1.2498 -4.8111 -0.6217 17 7 2.0129 -5.9770 -0.1697 18 7 3.0546 -6.5882 -0.8752 19 6 3.5216 -7.5979 -0.1978 20 6 2.7612 -7.6913 1.0443 21 6 2.8016 -8.5518 2.1472 22 6 1.9280 -8.3675 3.1792 23 6 1.0004 -7.3333 3.1454 24 7 0.0641 -7.1542 4.2776 25 8 -0.7523 -6.2505 4.2556 26 8 0.1098 -7.9104 5.2312 27 6 0.9420 -6.4802 2.0803 28 6 1.8209 -6.6435 1.0122 29 1 -0.4851 0.8400 0.0004 30 1 0.1205 -1.2942 -1.7276 31 1 0.1639 -3.0553 -1.9821 32 1 -3.0018 -2.4887 -0.2195 33 1 1.2058 -4.8059 -1.7107 34 1 0.2386 -4.8591 -0.2175 35 1 4.3299 -8.2474 -0.4994 36 1 3.5198 -9.3577 2.1809 37 1 1.9583 -9.0313 4.0305 38 1 0.2160 -5.6807 2.0665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739079281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:35 Heat of formation + Delta-G solvation = -8.542063 kcal Electronic energy + Delta-G solvation = -30868.479870 eV Core-core repulsion = 26296.337484 eV Total energy + Delta-G solvation = -4572.142386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.099 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.19866 -41.44468 -39.67393 -38.40655 -37.49394 -36.47040 -35.49534 -34.76186 -33.59173 -32.04727 -31.16583 -30.65223 -28.06557 -27.45216 -26.40809 -24.74547 -23.19203 -22.16373 -21.55943 -21.21346 -19.66273 -18.82422 -18.52554 -17.45316 -17.41714 -17.31513 -17.12675 -16.79281 -16.48368 -15.92067 -15.25655 -15.05745 -14.74176 -14.65054 -14.46576 -14.27149 -13.90144 -13.88098 -13.11638 -12.85896 -12.42241 -12.26443 -12.00004 -11.83501 -11.82100 -11.67879 -11.43015 -11.12353 -11.11732 -11.03340 -11.01909 -10.61452 -10.55721 -10.52451 -10.46575 -9.87271 -9.27047 -9.25955 -9.01372 -8.17789 -8.11618 -6.65847 -4.10728 -0.23173 0.88704 1.33025 1.38556 2.13120 2.32058 2.96920 3.13814 3.18645 3.21486 3.28733 3.35422 3.80800 4.02535 4.08842 4.27827 4.38422 4.43280 4.57726 4.73466 4.80013 4.97116 5.12249 5.16629 5.19163 5.26642 5.50750 5.60292 5.66742 5.80057 6.02248 6.19053 6.23633 6.33845 6.46244 6.64912 7.29876 7.36170 7.39564 7.69050 7.72982 8.11654 8.79415 8.84109 9.03754 9.51246 10.42482 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.003780 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.341201 B = 7404.761927 C = 8272.416037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.033 3.967 3 Si 0.932 3.068 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.308 4.308 8 H 0.110 0.890 9 N -0.420 5.420 10 C 0.137 3.863 11 C 0.485 3.515 12 O -0.499 6.499 13 O -0.532 6.532 14 C 0.436 3.564 15 O -0.559 6.559 16 C 0.117 3.883 17 N -0.360 5.360 18 N -0.214 5.214 19 C 0.064 3.936 20 C -0.144 4.144 21 C -0.032 4.032 22 C -0.121 4.121 23 C 0.001 3.999 24 N 0.029 4.971 25 O -0.155 6.155 26 O -0.160 6.160 27 C -0.050 4.050 28 C 0.136 3.864 29 H 0.274 0.726 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.396 0.604 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.205 0.795 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.225 -14.120 -3.945 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.170 4.170 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.128 0.872 9 N -0.139 5.139 10 C 0.011 3.989 11 C 0.325 3.675 12 O -0.384 6.384 13 O -0.344 6.344 14 C 0.223 3.777 15 O -0.441 6.441 16 C -0.008 4.008 17 N -0.145 5.145 18 N -0.026 5.026 19 C -0.132 4.132 20 C -0.153 4.153 21 C -0.053 4.053 22 C -0.142 4.142 23 C -0.084 4.084 24 N 0.548 4.452 25 O -0.371 6.371 26 O -0.376 6.376 27 C -0.073 4.073 28 C 0.018 3.982 29 H 0.084 0.916 30 H 0.152 0.848 31 H 0.096 0.904 32 H 0.253 0.747 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.222 0.778 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.995 -13.223 -5.263 14.267 hybrid contribution -0.801 0.812 1.528 1.907 sum 0.194 -12.411 -3.734 12.962 Atomic orbital electron populations 1.69782 1.06117 1.28291 1.47278 1.25281 0.95354 1.00175 0.96229 0.85777 0.79948 0.80543 0.77977 1.19054 1.20299 1.20631 1.19767 0.97935 0.82940 1.42807 0.87246 1.43439 1.20097 1.05036 1.45369 1.20800 0.81432 1.05434 0.91240 1.23754 0.83490 0.71299 0.88999 1.90660 1.85847 1.44633 1.17265 1.84502 1.17265 1.86188 1.46415 1.20024 0.88560 0.84005 0.85134 1.90600 1.25929 1.85707 1.41903 1.21713 0.94032 0.82755 1.02264 1.47868 1.28576 1.24975 1.13121 1.76680 0.98989 1.07206 1.19741 1.25124 1.00235 0.96712 0.91129 1.20216 0.99064 0.98448 0.97562 1.20209 0.97213 0.97720 0.90114 1.20325 0.95083 0.97644 1.01109 1.20390 0.96915 1.02000 0.89110 1.43576 1.00506 0.99422 1.01649 1.94607 1.31765 1.24815 1.85960 1.94494 1.76410 1.41631 1.25036 1.19602 0.98925 0.98903 0.89902 1.18220 0.96996 0.94027 0.88925 0.91558 0.84759 0.90387 0.74723 0.86581 0.87449 0.77814 0.83202 0.82918 0.82538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.74 9.28 55.50 0.52 -21.22 16 2 C 0.03 0.83 4.87 -17.47 -0.09 0.74 16 3 Si 0.93 19.70 29.61 -169.99 -5.03 14.67 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.31 -8.05 9.34 -14.93 -0.14 -8.19 16 8 H 0.11 3.06 7.37 -52.49 -0.39 2.68 16 9 N -0.42 -9.83 2.18 -116.10 -0.25 -10.09 16 10 C 0.14 2.68 4.97 -5.19 -0.03 2.66 16 11 C 0.48 9.75 5.86 36.00 0.21 9.97 16 12 O -0.50 -12.04 16.79 -18.75 -0.31 -12.36 16 13 O -0.53 -8.60 13.42 -39.25 -0.53 -9.12 16 14 C 0.44 9.98 7.48 -10.99 -0.08 9.90 16 15 O -0.56 -15.07 16.07 5.54 0.09 -14.98 16 16 C 0.12 2.03 5.46 -5.20 -0.03 2.01 16 17 N -0.36 -6.18 3.14 -59.88 -0.19 -6.36 16 18 N -0.21 -3.34 12.40 31.87 0.40 -2.95 16 19 C 0.06 0.77 12.28 -15.15 -0.19 0.58 16 20 C -0.14 -1.88 6.37 -105.20 -0.67 -2.55 16 21 C -0.03 -0.32 10.07 -39.58 -0.40 -0.72 16 22 C -0.12 -1.41 9.47 -39.95 -0.38 -1.79 16 23 C 0.00 0.02 6.81 -80.28 -0.55 -0.53 16 24 N 0.03 0.47 4.45 33.80 0.15 0.63 16 25 O -0.16 -2.85 18.39 -29.46 -0.54 -3.39 16 26 O -0.16 -2.56 18.41 -29.46 -0.54 -3.10 16 27 C -0.05 -0.83 9.46 -39.79 -0.38 -1.20 16 28 C 0.14 2.21 6.87 -84.17 -0.58 1.63 16 29 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 30 H 0.13 2.75 6.37 -51.93 -0.33 2.42 16 31 H 0.08 1.15 6.69 -51.93 -0.35 0.81 16 32 H 0.40 4.88 9.10 45.56 0.41 5.29 16 33 H 0.12 1.64 7.42 -51.93 -0.39 1.25 16 34 H 0.11 1.73 7.51 -51.93 -0.39 1.34 16 35 H 0.21 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.15 1.44 7.57 -52.49 -0.40 1.04 16 38 H 0.16 2.74 7.55 -52.48 -0.40 2.35 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -35.46 348.77 -6.48 -41.94 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -2.20 Total: 8.58 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: -3.28 Total: 12.50 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.62 Total: -40.00 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -1.84 Total: -42.95 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.46 -6.48 -41.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.398 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds