Wall clock time and date at job start Wed Apr 1 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86809 * 119.99706 * 2 1 4 4 H 1.48498 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46944 * 299.99989 * 3 2 1 6 6 H 1.48491 * 109.47115 * 59.99992 * 3 2 1 7 7 C 1.38948 * 120.00590 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00163 * 201.65287 * 7 2 1 9 9 N 1.37097 * 120.00015 * 21.64615 * 7 2 1 10 10 C 1.46504 * 119.99862 * 16.50702 * 9 7 2 11 11 C 1.50693 * 109.47711 * 264.07038 * 10 9 7 12 12 O 1.20826 * 119.99711 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00456 * 180.02562 * 11 10 9 14 14 C 1.34770 * 120.00561 * 196.51145 * 9 7 2 15 15 O 1.21298 * 119.99705 * 359.97438 * 14 9 7 16 16 C 1.50703 * 120.00682 * 179.97438 * 14 9 7 17 17 N 1.46494 * 109.47390 * 179.97438 * 16 14 9 18 18 N 1.39868 * 125.46096 * 270.02413 * 17 16 14 19 19 C 1.30241 * 110.08820 * 179.97438 * 18 17 16 20 20 C 1.45937 * 107.78377 * 0.02562 * 19 18 17 21 21 C 1.39945 * 134.03021 * 180.02562 * 20 19 18 22 22 C 1.36466 * 119.63556 * 180.02562 * 21 20 19 23 23 C 1.38967 * 120.62404 * 359.93268 * 22 21 20 24 24 N 1.48006 * 119.58842 * 180.02562 * 23 22 21 25 25 O 1.21797 * 120.00253 * 180.02562 * 24 23 22 26 26 O 1.21802 * 119.99934 * 0.02562 * 24 23 22 27 27 C 1.36586 * 120.81890 * 0.03540 * 23 22 21 28 28 C 1.37040 * 125.45938 * 89.99794 * 17 16 14 29 29 H 0.96999 * 120.00594 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.47077 * 24.07128 * 10 9 7 31 31 H 1.08997 * 109.46757 * 144.06810 * 10 9 7 32 32 H 0.96702 * 117.00275 * 180.02562 * 13 11 10 33 33 H 1.08999 * 109.46770 * 59.99538 * 16 14 9 34 34 H 1.09000 * 109.46470 * 300.00527 * 16 14 9 35 35 H 1.07995 * 126.11469 * 180.26334 * 19 18 17 36 36 H 1.08002 * 120.17920 * 359.97275 * 21 20 19 37 37 H 1.07991 * 119.68433 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.07215 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0317 -1.2363 0.3445 9 7 1.3961 -2.3486 -0.4390 10 6 0.1674 -2.2641 -1.2324 11 6 -1.0270 -2.4243 -0.3276 12 8 -0.8682 -2.5923 0.8583 13 8 -2.2672 -2.3814 -0.8392 14 6 1.9238 -3.5521 -0.1402 15 8 2.9413 -3.6220 0.5164 16 6 1.2498 -4.8111 -0.6217 17 7 2.0129 -5.9770 -0.1697 18 7 3.0546 -6.5882 -0.8752 19 6 3.5216 -7.5979 -0.1978 20 6 2.7612 -7.6913 1.0443 21 6 2.8016 -8.5518 2.1472 22 6 1.9280 -8.3675 3.1792 23 6 1.0004 -7.3333 3.1454 24 7 0.0641 -7.1542 4.2776 25 8 -0.7523 -6.2505 4.2556 26 8 0.1098 -7.9104 5.2312 27 6 0.9420 -6.4802 2.0803 28 6 1.8209 -6.6435 1.0122 29 1 -0.4851 0.8400 0.0004 30 1 0.1205 -1.2942 -1.7276 31 1 0.1639 -3.0553 -1.9821 32 1 -3.0018 -2.4887 -0.2195 33 1 1.2058 -4.8059 -1.7107 34 1 0.2386 -4.8591 -0.2175 35 1 4.3299 -8.2474 -0.4994 36 1 3.5198 -9.3577 2.1809 37 1 1.9583 -9.0313 4.0305 38 1 0.2160 -5.6807 2.0665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739079281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:34 Heat of formation + Delta-G solvation = -33.357859 kcal Electronic energy + Delta-G solvation = -30869.555964 eV Core-core repulsion = 26296.337484 eV Total energy + Delta-G solvation = -4573.218480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.099 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.44451 -42.58383 -41.31623 -40.06196 -38.59899 -37.78672 -37.15680 -36.47615 -34.83958 -33.86269 -32.29012 -31.79757 -29.71346 -28.83071 -27.64205 -26.48646 -24.22997 -23.34946 -23.01444 -22.52043 -21.12580 -20.09818 -19.83526 -19.17443 -18.85078 -18.74056 -18.48906 -18.26062 -17.68379 -17.50914 -16.83805 -16.33656 -16.20774 -16.09011 -15.84052 -15.56120 -15.35899 -15.03875 -14.48616 -14.06878 -13.92510 -13.65866 -13.56081 -13.38356 -13.32759 -12.97334 -12.77449 -12.68522 -12.49639 -12.39241 -12.35198 -12.22308 -12.17858 -12.07952 -11.64784 -11.64490 -11.06761 -10.73136 -10.35972 -10.01842 -9.28850 -8.55021 -6.07885 -1.44570 -0.11161 0.13217 0.19546 0.99190 1.25583 1.29782 1.38509 1.52061 1.55514 1.70165 2.15005 2.28259 2.43045 2.75029 2.94597 3.07159 3.23039 3.37811 3.51757 3.58004 3.67512 3.83791 3.87392 4.10217 4.19880 4.34806 4.45846 4.64244 4.71751 4.80088 4.81426 5.04343 5.24174 5.35446 5.43414 5.45617 5.85889 5.88455 6.23404 6.36004 6.40343 6.95414 7.13453 7.33908 7.70533 8.50961 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.003780 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.341201 B = 7404.761927 C = 8272.416037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.006 3.994 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.255 1.255 6 H -0.285 1.285 7 C -0.343 4.343 8 H 0.076 0.924 9 N -0.432 5.432 10 C 0.134 3.866 11 C 0.493 3.507 12 O -0.548 6.548 13 O -0.516 6.516 14 C 0.428 3.572 15 O -0.612 6.612 16 C 0.132 3.868 17 N -0.386 5.386 18 N -0.252 5.252 19 C 0.095 3.905 20 C -0.144 4.144 21 C 0.001 3.999 22 C -0.117 4.117 23 C -0.004 4.004 24 N 0.028 4.972 25 O -0.232 6.232 26 O -0.113 6.113 27 C -0.086 4.086 28 C 0.109 3.891 29 H 0.278 0.722 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.415 0.585 33 H 0.149 0.851 34 H 0.111 0.889 35 H 0.262 0.738 36 H 0.212 0.788 37 H 0.186 0.814 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 -17.073 -4.874 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.197 4.197 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.180 1.180 6 H -0.211 1.211 7 C -0.470 4.470 8 H 0.094 0.906 9 N -0.151 5.151 10 C 0.009 3.991 11 C 0.335 3.665 12 O -0.437 6.437 13 O -0.328 6.328 14 C 0.216 3.784 15 O -0.498 6.498 16 C 0.006 3.994 17 N -0.172 5.172 18 N -0.063 5.063 19 C -0.102 4.102 20 C -0.153 4.153 21 C -0.019 4.019 22 C -0.138 4.138 23 C -0.089 4.089 24 N 0.545 4.455 25 O -0.430 6.430 26 O -0.345 6.345 27 C -0.109 4.109 28 C -0.007 4.007 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.275 0.725 33 H 0.167 0.833 34 H 0.129 0.871 35 H 0.277 0.723 36 H 0.229 0.771 37 H 0.203 0.797 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.142 -16.036 -6.303 17.363 hybrid contribution -1.122 1.472 1.926 2.671 sum 1.020 -14.564 -4.377 15.242 Atomic orbital electron populations 1.69859 1.06763 1.29065 1.46734 1.25957 0.96134 1.02317 0.95266 0.84915 0.78237 0.76932 0.78408 1.19908 1.17960 1.21081 1.19591 0.97344 0.85054 1.45054 0.90591 1.43571 1.21181 1.04726 1.45585 1.21007 0.79830 1.06891 0.91388 1.23809 0.84594 0.69927 0.88188 1.90660 1.86686 1.47016 1.19310 1.84434 1.16634 1.85293 1.46423 1.20991 0.87808 0.85491 0.84067 1.90534 1.28284 1.86838 1.44159 1.21486 0.93466 0.80574 1.03858 1.47837 1.29970 1.25397 1.14009 1.76649 0.99655 1.08962 1.21065 1.26132 0.99492 0.95227 0.89383 1.20706 0.97970 0.97717 0.98868 1.20888 0.96354 0.97287 0.87370 1.20852 0.93752 0.96474 1.02694 1.20685 0.97220 1.03018 0.87950 1.43871 1.00554 0.99001 1.02098 1.94635 1.34320 1.26879 1.87140 1.94424 1.74999 1.40138 1.24915 1.19412 1.00071 0.99702 0.91732 1.18564 0.97973 0.95459 0.88740 0.91196 0.85540 0.85354 0.72505 0.83333 0.87112 0.72265 0.77094 0.79654 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.79 9.28 21.66 0.20 -44.59 16 2 C 0.01 0.30 4.87 84.93 0.41 0.72 16 3 Si 0.99 41.32 29.61 68.60 2.03 43.35 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.34 -18.96 9.34 84.04 0.79 -18.18 16 8 H 0.08 4.60 7.37 -2.91 -0.02 4.58 16 9 N -0.43 -21.18 2.18 -639.60 -1.39 -22.57 16 10 C 0.13 5.30 4.97 85.63 0.43 5.72 16 11 C 0.49 20.22 5.86 71.23 0.42 20.64 16 12 O -0.55 -27.80 16.79 21.96 0.37 -27.43 16 13 O -0.52 -16.31 13.42 -51.39 -0.69 -17.00 16 14 C 0.43 20.65 7.48 87.66 0.66 21.30 16 15 O -0.61 -35.15 16.07 -3.09 -0.05 -35.20 16 16 C 0.13 4.71 5.46 85.64 0.47 5.18 16 17 N -0.39 -13.41 3.14 -343.37 -1.08 -14.49 16 18 N -0.25 -7.53 12.40 -53.09 -0.66 -8.18 16 19 C 0.09 1.89 12.28 86.92 1.07 2.96 16 20 C -0.14 -3.30 6.37 -20.24 -0.13 -3.43 16 21 C 0.00 0.02 10.07 22.27 0.22 0.24 16 22 C -0.12 -2.30 9.47 22.03 0.21 -2.09 16 23 C 0.00 -0.11 6.81 36.17 0.25 0.14 16 24 N 0.03 0.94 4.45 -46.98 -0.21 0.73 16 25 O -0.23 -9.32 18.39 18.89 0.35 -8.98 16 26 O -0.11 -3.46 18.41 18.88 0.35 -3.12 16 27 C -0.09 -3.00 9.46 22.13 0.21 -2.79 16 28 C 0.11 3.56 6.87 39.21 0.27 3.83 16 29 H 0.28 13.25 8.31 -92.71 -0.77 12.48 16 30 H 0.13 5.22 6.37 -2.38 -0.02 5.20 16 31 H 0.13 3.66 6.69 -2.39 -0.02 3.64 16 32 H 0.42 9.97 9.10 -74.06 -0.67 9.30 16 33 H 0.15 4.12 7.42 -2.39 -0.02 4.10 16 34 H 0.11 3.80 7.51 -2.39 -0.02 3.79 16 35 H 0.26 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.21 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.19 2.47 7.57 -2.91 -0.02 2.45 16 38 H 0.12 4.98 7.55 -2.91 -0.02 4.96 16 Total: -1.00 -86.49 348.77 4.98 -81.52 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.50 Total: 21.69 kcal Atomic # 6 Polarization: 29.00 SS G_CDS: 5.26 Total: 34.26 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -3.14 Total: -89.09 kcal Atomic # 8 Polarization: -92.05 SS G_CDS: 0.32 Total: -91.72 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -86.49 4.98 -81.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.157 kcal (2) G-P(sol) polarization free energy of solvation -86.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds