Wall clock time and date at job start Wed Apr 1 2020 05:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81389 * 1 3 3 C 1.76198 * 103.00237 * 2 1 4 4 C 1.39308 * 119.93204 * 359.97438 * 3 2 1 5 5 C 1.36560 * 120.19143 * 180.02562 * 4 3 2 6 6 C 1.39846 * 120.05838 * 0.23904 * 5 4 3 7 7 C 1.47454 * 120.06193 * 179.74415 * 6 5 4 8 8 O 1.21627 * 119.99902 * 179.97438 * 7 6 5 9 9 N 1.34783 * 120.00377 * 359.97438 * 7 6 5 10 10 C 1.40333 * 120.00384 * 179.97438 * 9 7 6 11 11 C 1.41362 * 126.09174 * 359.69385 * 10 9 7 12 12 N 1.30551 * 108.43565 * 179.81152 * 11 10 9 13 13 N 1.40062 * 108.46897 * 0.44602 * 12 11 10 14 14 C 1.34376 * 126.08245 * 179.69453 * 13 12 11 15 15 H 1.08003 * 119.99964 * 180.02562 * 14 13 12 16 16 C 1.46467 * 119.99883 * 0.02562 * 14 13 12 17 17 N 1.29451 * 120.00106 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00161 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46931 * 90.00060 * 18 16 14 20 20 H 1.48493 * 109.47380 * 210.00195 * 18 16 14 21 21 H 1.48498 * 109.46794 * 330.00586 * 18 16 14 22 22 C 1.35251 * 126.09754 * 180.02562 * 10 9 7 23 23 C 1.39845 * 119.87147 * 359.48517 * 6 5 4 24 24 C 1.37619 * 119.80609 * 0.53198 * 23 6 5 25 25 N 1.48017 * 120.02775 * 179.74655 * 24 23 6 26 26 O 1.31702 * 120.00330 * 359.97366 * 25 24 23 27 27 O 1.31706 * 119.99756 * 179.97438 * 25 24 23 28 28 H 1.09003 * 109.47297 * 299.99571 * 1 2 3 29 29 H 1.09002 * 109.47598 * 60.00053 * 1 2 3 30 30 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.90576 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.96642 * 179.97438 * 5 4 3 33 33 H 0.97002 * 119.99335 * 0.02562 * 9 7 6 34 34 H 1.08005 * 125.78291 * 359.97438 * 11 10 9 35 35 H 0.96994 * 120.00023 * 180.02562 * 17 16 14 36 36 H 1.08002 * 126.27994 * 359.96089 * 22 10 9 37 37 H 1.07999 * 120.09503 * 180.25836 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1904 2.6657 -0.0005 5 6 1.4916 3.9977 -0.0011 6 6 2.8267 4.4139 -0.0061 7 6 3.1520 5.8521 -0.0124 8 8 4.3136 6.2128 -0.0163 9 7 2.1623 6.7670 -0.0138 10 6 2.4719 8.1358 -0.0192 11 6 3.7698 8.6960 -0.0175 12 7 3.6580 9.9966 -0.0281 13 7 2.2965 10.3250 -0.0266 14 6 1.7817 11.5663 -0.0297 15 1 0.7109 11.7069 -0.0277 16 6 2.6730 12.7286 -0.0356 17 7 3.9565 12.5601 -0.0385 18 14 1.9575 14.4542 -0.0406 19 1 1.7706 14.9165 1.3582 20 1 2.8865 15.3732 -0.7458 21 1 0.6465 14.4444 -0.7380 22 6 1.5818 9.1541 -0.0207 23 6 3.8526 3.4636 0.0003 24 6 3.5429 2.1227 0.0004 25 7 4.6248 1.1126 0.0015 26 8 5.8846 1.4968 0.0018 27 8 4.3278 -0.1705 0.0021 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.1585 2.3471 -0.0005 32 1 0.6980 4.7302 -0.0019 33 1 1.2359 6.4793 -0.0103 34 1 4.6968 8.1418 -0.0114 35 1 4.5466 13.3299 -0.0421 36 1 0.5057 9.0623 -0.0185 37 1 4.8849 3.7810 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747438191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:39 Heat of formation + Delta-G solvation = 93.595408 kcal Electronic energy + Delta-G solvation = -26296.946335 eV Core-core repulsion = 22171.985833 eV Total energy + Delta-G solvation = -4124.960502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.00106 -41.31828 -40.22068 -39.07160 -36.07591 -35.66072 -35.13608 -33.31463 -33.12193 -32.41075 -29.78001 -29.67515 -27.93036 -26.74289 -25.42966 -23.67763 -22.92103 -22.15808 -21.29937 -20.30630 -19.49786 -19.21701 -18.55201 -18.05662 -17.41714 -17.29378 -17.20608 -16.29164 -16.26463 -16.18456 -15.78156 -15.66298 -15.20296 -15.16682 -14.78727 -14.75255 -13.98806 -13.96265 -13.69274 -13.62756 -13.29057 -13.07368 -12.92129 -12.83012 -12.69046 -12.39585 -12.07011 -12.00169 -11.92806 -11.30039 -11.07604 -11.03111 -10.93119 -10.88347 -10.77254 -10.19210 -8.86416 -8.61848 -8.55410 -6.08274 -1.97639 -0.83237 -0.13595 -0.09346 0.08118 1.18481 1.27458 1.40194 1.40631 1.57948 1.83871 1.94552 2.17543 2.17958 2.63419 2.89162 2.97040 3.00093 3.40564 3.46730 3.54344 3.61161 4.16933 4.21087 4.34345 4.34712 4.49096 4.53398 4.56708 4.61277 4.72441 4.94144 4.96873 5.06067 5.12787 5.21984 5.39997 5.49713 5.94805 6.22932 6.61786 6.66007 7.26649 7.57999 7.72541 8.36050 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.026066 B = 0.002032 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.946032 B =13775.256353 C =14834.046625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 S 0.021 5.979 3 C -0.023 4.023 4 C -0.124 4.124 5 C 0.014 3.986 6 C -0.135 4.135 7 C 0.539 3.461 8 O -0.574 6.574 9 N -0.594 5.594 10 C -0.051 4.051 11 C -0.067 4.067 12 N -0.332 5.332 13 N -0.143 5.143 14 C -0.381 4.381 15 H 0.146 0.854 16 C 0.006 3.994 17 N -0.787 5.787 18 Si 1.021 2.979 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.241 1.241 22 C -0.102 4.102 23 C 0.014 3.986 24 C -0.023 4.023 25 N -0.009 5.009 26 O -0.260 6.260 27 O -0.141 6.141 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.132 0.868 31 H 0.205 0.795 32 H 0.194 0.806 33 H 0.422 0.578 34 H 0.161 0.839 35 H 0.288 0.712 36 H 0.191 0.809 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.012 -20.275 0.076 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.365 4.365 2 S 0.271 5.729 3 C -0.141 4.141 4 C -0.149 4.149 5 C -0.008 4.008 6 C -0.143 4.143 7 C 0.327 3.673 8 O -0.454 6.454 9 N -0.239 5.239 10 C -0.157 4.157 11 C -0.240 4.240 12 N -0.165 5.165 13 N 0.092 4.908 14 C -0.516 4.516 15 H 0.163 0.837 16 C -0.214 4.214 17 N -0.411 5.411 18 Si 0.838 3.162 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.163 1.163 22 C -0.251 4.251 23 C -0.008 4.008 24 C -0.120 4.120 25 N 0.453 4.547 26 O -0.429 6.429 27 O -0.339 6.339 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.150 0.850 31 H 0.222 0.778 32 H 0.211 0.789 33 H 0.262 0.738 34 H 0.178 0.822 35 H 0.100 0.900 36 H 0.208 0.792 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.020 -19.556 0.055 25.280 hybrid contribution -0.254 0.602 0.021 0.654 sum -16.274 -18.954 0.076 24.982 Atomic orbital electron populations 1.24477 0.94142 1.09740 1.08164 1.87531 1.07444 0.95205 1.82750 1.22653 0.92604 1.03265 0.95535 1.21452 0.99913 0.90785 1.02704 1.21879 0.94611 0.97773 0.86534 1.19593 0.94548 0.91113 1.09023 1.18195 0.85009 0.85833 0.78251 1.90736 1.21496 1.81401 1.51784 1.42042 1.09697 1.02093 1.70082 1.17135 0.92469 0.83441 1.22665 1.24105 0.97989 0.91885 1.09974 1.77982 0.95460 1.13333 1.29735 1.44019 1.03515 1.05222 1.38035 1.21602 0.94393 0.79393 1.56178 0.83697 1.28418 0.94527 1.05471 0.93015 1.69414 1.05832 1.35029 1.30827 0.84593 0.79305 0.72706 0.79571 1.18576 1.19908 1.16330 1.21869 0.98029 0.84319 1.20845 1.20907 1.02246 0.88983 0.88694 1.19643 0.84761 0.86940 1.20612 1.50558 1.04017 1.03325 0.96811 1.96332 0.98637 1.86629 1.61270 1.96110 1.88681 0.95610 1.53502 0.87055 0.87054 0.85011 0.77792 0.78891 0.73840 0.82193 0.90014 0.79201 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.13 9.14 113.37 1.04 0.91 16 2 S 0.02 0.26 19.20 -56.49 -1.08 -0.83 16 3 C -0.02 -0.35 6.13 22.78 0.14 -0.21 16 4 C -0.12 -0.93 9.30 22.14 0.21 -0.73 16 5 C 0.01 0.15 9.48 22.27 0.21 0.36 16 6 C -0.13 -3.04 5.88 -20.07 -0.12 -3.16 16 7 C 0.54 17.67 7.73 86.67 0.67 18.34 16 8 O -0.57 -25.29 13.48 -4.12 -0.06 -25.35 16 9 N -0.59 -18.13 5.41 -306.74 -1.66 -19.79 16 10 C -0.05 -2.21 6.90 37.86 0.26 -1.95 16 11 C -0.07 -3.61 10.85 85.65 0.93 -2.68 16 12 N -0.33 -19.74 10.47 -56.17 -0.59 -20.33 16 13 N -0.14 -7.65 3.65 -185.62 -0.68 -8.32 16 14 C -0.38 -19.34 10.48 86.45 0.91 -18.43 16 15 H 0.15 6.30 7.94 -2.91 -0.02 6.27 16 16 C 0.01 0.29 5.69 87.19 0.50 0.79 16 17 N -0.79 -43.33 11.89 23.19 0.28 -43.05 16 18 Si 1.02 35.84 29.64 68.60 2.03 37.88 16 19 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 20 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 21 H -0.24 -7.62 7.11 99.48 0.71 -6.92 16 22 C -0.10 -4.45 11.48 83.17 0.95 -3.49 16 23 C 0.01 0.36 9.12 22.51 0.21 0.57 16 24 C -0.02 -0.56 6.90 36.49 0.25 -0.31 16 25 N -0.01 -0.26 4.98 -46.20 -0.23 -0.49 16 26 O -0.26 -9.49 19.15 3.51 0.07 -9.42 16 27 O -0.14 -4.06 16.37 3.50 0.06 -4.00 16 28 H 0.11 -0.27 7.74 -2.39 -0.02 -0.29 16 29 H 0.11 -0.27 7.74 -2.39 -0.02 -0.29 16 30 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.21 -0.45 5.85 -2.91 -0.02 -0.47 16 32 H 0.19 0.39 6.39 -2.91 -0.02 0.38 16 33 H 0.42 7.72 6.84 -92.71 -0.63 7.09 16 34 H 0.16 8.93 5.92 -2.91 -0.02 8.91 16 35 H 0.29 14.32 8.27 -92.71 -0.77 13.55 16 36 H 0.19 6.20 8.06 -2.91 -0.02 6.17 16 37 H 0.14 4.62 7.16 -2.91 -0.02 4.60 16 Total: -1.00 -86.63 344.69 4.83 -81.80 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.54 Total: 21.90 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 6.15 Total: -9.99 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -2.88 Total: -91.99 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: 0.07 Total: -38.78 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.88 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -1.08 Total: -0.83 kcal Total: -86.63 4.83 -81.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747438191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.393 kcal (2) G-P(sol) polarization free energy of solvation -86.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds