Wall clock time and date at job start Wed Apr 1 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31789 * 119.07525 * 2 1 4 4 C 1.32665 * 120.98557 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 120.41281 * 179.97438 * 4 3 2 6 6 C 1.38316 * 119.16658 * 359.97438 * 4 3 2 7 7 C 1.39523 * 118.32228 * 0.02562 * 6 4 3 8 8 N 1.38559 * 120.52057 * 180.02562 * 7 6 4 9 9 N 1.40100 * 119.99995 * 179.97438 * 8 7 6 10 10 C 1.34778 * 120.00262 * 180.02562 * 9 8 7 11 11 O 1.21590 * 119.99910 * 359.97438 * 10 9 8 12 12 C 1.47534 * 119.99881 * 180.02562 * 10 9 8 13 13 C 1.39661 * 120.19920 * 359.97033 * 12 10 9 14 14 C 1.37833 * 119.91831 * 180.02562 * 13 12 10 15 15 C 1.38567 * 120.32258 * 0.02562 * 14 13 12 16 16 C 1.38030 * 120.40640 * 0.02562 * 15 14 13 17 17 C 1.38833 * 120.06651 * 359.97304 * 16 15 14 18 18 O 1.35525 * 120.15895 * 180.02562 * 17 16 15 19 19 C 1.34812 * 116.99663 * 354.40620 * 18 17 16 20 20 H 1.08001 * 120.00461 * 5.06541 * 19 18 17 21 21 C 1.38702 * 119.99481 * 185.06210 * 19 18 17 22 22 N 1.31520 * 120.00094 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99951 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46779 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46897 * 119.99656 * 23 21 19 26 26 H 1.48493 * 109.47181 * 240.00114 * 23 21 19 27 27 N 1.31744 * 119.07844 * 180.26762 * 2 1 3 28 28 H 1.09002 * 109.46524 * 90.00585 * 1 2 3 29 29 H 1.08997 * 109.47087 * 210.00150 * 1 2 3 30 30 H 1.08998 * 109.47016 * 330.00795 * 1 2 3 31 31 H 1.07999 * 120.83883 * 180.02562 * 6 4 3 32 32 H 0.96997 * 120.00174 * 0.02562 * 8 7 6 33 33 H 0.97006 * 120.00113 * 359.97438 * 9 8 7 34 34 H 1.07999 * 120.04040 * 0.04381 * 13 12 10 35 35 H 1.07997 * 119.83568 * 180.30209 * 14 13 12 36 36 H 1.08002 * 119.80009 * 179.97438 * 15 14 13 37 37 H 1.07993 * 119.96622 * 180.02562 * 16 15 14 38 38 H 0.97003 * 120.00087 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1475 1.1518 0.0000 4 6 3.4734 1.1960 0.0005 5 17 4.3018 2.7216 -0.0002 6 6 4.1873 0.0114 0.0016 7 6 3.4771 -1.1895 0.0015 8 7 4.1463 -2.4028 0.0031 9 7 3.4222 -3.6022 0.0036 10 6 4.0730 -4.7824 0.0057 11 8 5.2887 -4.8062 0.0067 12 6 3.3104 -6.0453 0.0056 13 6 1.9140 -6.0228 0.0041 14 6 1.2073 -7.2061 0.0045 15 6 1.8755 -8.4200 0.0071 16 6 3.2553 -8.4579 0.0098 17 6 3.9836 -7.2759 0.0093 18 8 5.3384 -7.3110 0.0113 19 6 5.9191 -8.5217 0.1309 20 1 5.3109 -9.4142 0.1371 21 6 7.2977 -8.6212 0.2458 22 7 8.0384 -7.5344 0.2387 23 14 8.1025 -10.2988 0.4122 24 1 7.0569 -11.3533 0.3937 25 1 9.0402 -10.5123 -0.7193 26 1 8.8497 -10.3644 1.6937 27 7 2.1473 -1.1514 -0.0054 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 5.2673 0.0159 0.0024 32 1 5.1160 -2.4218 0.0047 33 1 2.4523 -3.5832 0.0032 34 1 1.3885 -5.0792 0.0022 35 1 0.1275 -7.1871 -0.0016 36 1 1.3134 -9.3422 0.0079 37 1 3.7688 -9.4079 0.0113 38 1 9.0026 -7.6040 0.3187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748336740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:37 Heat of formation + Delta-G solvation = 53.828206 kcal Electronic energy + Delta-G solvation = -26628.484752 eV Core-core repulsion = 22499.756108 eV Total energy + Delta-G solvation = -4128.728644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25887 -39.81224 -38.47900 -37.14211 -36.52188 -36.21379 -33.35258 -33.27473 -32.45430 -31.21132 -29.54295 -29.04813 -28.43204 -25.51082 -24.13543 -23.14670 -23.01277 -21.59017 -20.51207 -18.85946 -18.28880 -18.08266 -17.20461 -16.62642 -15.97832 -15.78950 -15.68286 -15.04996 -14.74477 -14.68395 -14.50944 -14.24873 -13.88466 -13.78165 -13.67253 -13.27583 -12.98061 -12.85911 -12.65885 -12.65704 -11.81763 -11.71924 -11.64857 -11.41811 -11.26278 -11.02496 -11.00898 -10.89463 -10.51932 -10.24555 -9.77440 -9.65493 -9.62040 -9.21210 -8.98702 -8.44876 -7.77785 -7.42650 -6.56062 -4.15598 0.62801 0.97144 1.31117 1.55422 1.97793 2.20431 3.05398 3.06273 3.12168 3.40615 3.46066 3.55834 3.84392 3.92924 4.48321 4.57061 4.59999 4.93318 4.95840 5.04924 5.10780 5.20908 5.31689 5.40080 5.44332 5.56886 5.61888 5.88029 5.99296 6.03273 6.41005 6.44128 6.55434 6.74070 6.79677 6.94802 7.11205 7.18345 7.37947 7.56109 7.73588 7.84632 7.95241 8.77833 8.84782 9.53426 10.57571 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.002508 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.165342 B =11160.117358 C =13136.253739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.387 3.613 3 N -0.564 5.564 4 C 0.261 3.739 5 Cl -0.017 7.017 6 C -0.281 4.281 7 C 0.459 3.541 8 N -0.485 5.485 9 N -0.532 5.532 10 C 0.558 3.442 11 O -0.500 6.500 12 C -0.223 4.223 13 C -0.035 4.035 14 C -0.227 4.227 15 C -0.046 4.046 16 C -0.235 4.235 17 C 0.192 3.808 18 O -0.123 6.123 19 C -0.403 4.403 20 H 0.097 0.903 21 C 0.045 3.955 22 N -0.831 5.831 23 Si 0.942 3.058 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.274 1.274 27 N -0.580 5.580 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.447 0.553 33 H 0.427 0.573 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.134 0.866 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.379 12.061 -0.280 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.118 3.882 3 N -0.287 5.287 4 C 0.092 3.908 5 Cl 0.011 6.989 6 C -0.313 4.313 7 C 0.211 3.789 8 N -0.210 5.210 9 N -0.285 5.285 10 C 0.348 3.652 11 O -0.373 6.373 12 C -0.229 4.229 13 C -0.054 4.054 14 C -0.246 4.246 15 C -0.065 4.065 16 C -0.254 4.254 17 C 0.132 3.868 18 O -0.020 6.020 19 C -0.479 4.479 20 H 0.114 0.886 21 C -0.163 4.163 22 N -0.462 5.462 23 Si 0.766 3.234 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.199 1.199 27 N -0.308 5.308 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.173 0.827 32 H 0.293 0.707 33 H 0.270 0.730 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.887 12.174 -0.290 17.017 hybrid contribution 1.361 -0.672 0.060 1.519 sum -10.525 11.502 -0.230 15.593 Atomic orbital electron populations 1.20619 0.84981 1.04489 1.04238 1.22840 0.97551 0.81175 0.86637 1.67666 1.07878 1.30629 1.22527 1.21427 0.89676 0.87390 0.92347 1.98426 1.75292 1.29155 1.95981 1.21519 1.02764 0.90038 1.16936 1.18166 0.88605 0.84504 0.87581 1.43166 1.07238 0.94419 1.76161 1.45118 1.08138 0.95430 1.79800 1.18490 0.88046 0.81562 0.77085 1.90976 1.12494 1.85968 1.47817 1.18389 0.92499 0.89364 1.22675 1.20794 0.91645 0.97804 0.95183 1.20480 0.98822 0.92245 1.13075 1.20946 0.93750 0.97311 0.94508 1.21163 0.94183 0.98369 1.11661 1.19182 0.85126 0.91710 0.90816 1.84154 1.12667 1.32157 1.73061 1.21578 0.90864 0.82811 1.52606 0.88618 1.25414 0.95348 0.99562 0.96002 1.70124 1.06101 1.27878 1.42099 0.85636 0.79398 0.79866 0.78463 1.18877 1.19942 1.19933 1.67708 1.07012 1.31196 1.24880 0.89194 0.89186 0.89278 0.82696 0.70703 0.73014 0.86837 0.86940 0.86931 0.84837 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.32 36.01 0.37 -0.27 16 2 C 0.39 4.48 7.64 -157.24 -1.20 3.28 16 3 N -0.56 -6.97 10.33 -7.93 -0.08 -7.05 16 4 C 0.26 3.10 7.33 -17.16 -0.13 2.98 16 5 Cl -0.02 -0.17 29.15 -51.86 -1.51 -1.69 16 6 C -0.28 -3.28 9.84 -39.07 -0.38 -3.66 16 7 C 0.46 6.07 7.63 -154.76 -1.18 4.89 16 8 N -0.49 -7.12 6.41 31.23 0.20 -6.92 16 9 N -0.53 -8.62 6.24 30.46 0.19 -8.43 16 10 C 0.56 11.57 7.88 -12.47 -0.10 11.47 16 11 O -0.50 -12.72 15.00 -16.57 -0.25 -12.97 16 12 C -0.22 -4.56 5.89 -104.81 -0.62 -5.18 16 13 C -0.04 -0.57 9.54 -39.20 -0.37 -0.94 16 14 C -0.23 -3.47 10.02 -39.61 -0.40 -3.86 16 15 C -0.05 -0.76 10.03 -39.54 -0.40 -1.16 16 16 C -0.23 -4.74 9.16 -39.44 -0.36 -5.11 16 17 C 0.19 4.52 6.66 -38.60 -0.26 4.26 16 18 O -0.12 -3.45 7.84 -21.06 -0.17 -3.62 16 19 C -0.40 -10.94 9.49 30.90 0.29 -10.65 16 20 H 0.10 2.35 5.21 -52.49 -0.27 2.08 16 21 C 0.04 1.21 5.49 -17.51 -0.10 1.11 16 22 N -0.83 -24.17 13.67 55.48 0.76 -23.42 16 23 Si 0.94 19.83 29.55 -169.99 -5.02 14.80 16 24 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 N -0.58 -7.47 9.41 -9.98 -0.09 -7.57 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.45 6.50 8.01 -182.60 -1.46 5.04 16 33 H 0.43 6.01 6.02 -182.59 -1.10 4.91 16 34 H 0.11 1.43 6.40 -52.49 -0.34 1.09 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -33.27 354.03 -10.61 -43.88 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.14 Total: 10.49 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -4.83 Total: -2.84 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.97 Total: -53.39 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.41 Total: -16.59 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.51 Total: -1.69 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.27 -10.61 -43.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748336740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.704 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds