Wall clock time and date at job start Wed Apr 1 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31789 * 119.07525 * 2 1 4 4 C 1.32665 * 120.98557 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 120.41281 * 179.97438 * 4 3 2 6 6 C 1.38316 * 119.16658 * 359.97438 * 4 3 2 7 7 C 1.39523 * 118.32228 * 0.02562 * 6 4 3 8 8 N 1.38559 * 120.52057 * 180.02562 * 7 6 4 9 9 N 1.40100 * 119.99995 * 179.97438 * 8 7 6 10 10 C 1.34778 * 120.00262 * 180.02562 * 9 8 7 11 11 O 1.21590 * 119.99910 * 359.97438 * 10 9 8 12 12 C 1.47534 * 119.99881 * 180.02562 * 10 9 8 13 13 C 1.39661 * 120.19920 * 359.97033 * 12 10 9 14 14 C 1.37833 * 119.91831 * 180.02562 * 13 12 10 15 15 C 1.38567 * 120.32258 * 0.02562 * 14 13 12 16 16 C 1.38030 * 120.40640 * 0.02562 * 15 14 13 17 17 C 1.38833 * 120.06651 * 359.97304 * 16 15 14 18 18 O 1.35525 * 120.15895 * 180.02562 * 17 16 15 19 19 C 1.34812 * 116.99663 * 354.40620 * 18 17 16 20 20 H 1.08001 * 120.00461 * 5.06541 * 19 18 17 21 21 C 1.38702 * 119.99481 * 185.06210 * 19 18 17 22 22 N 1.31520 * 120.00094 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99951 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46779 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46897 * 119.99656 * 23 21 19 26 26 H 1.48493 * 109.47181 * 240.00114 * 23 21 19 27 27 N 1.31744 * 119.07844 * 180.26762 * 2 1 3 28 28 H 1.09002 * 109.46524 * 90.00585 * 1 2 3 29 29 H 1.08997 * 109.47087 * 210.00150 * 1 2 3 30 30 H 1.08998 * 109.47016 * 330.00795 * 1 2 3 31 31 H 1.07999 * 120.83883 * 180.02562 * 6 4 3 32 32 H 0.96997 * 120.00174 * 0.02562 * 8 7 6 33 33 H 0.97006 * 120.00113 * 359.97438 * 9 8 7 34 34 H 1.07999 * 120.04040 * 0.04381 * 13 12 10 35 35 H 1.07997 * 119.83568 * 180.30209 * 14 13 12 36 36 H 1.08002 * 119.80009 * 179.97438 * 15 14 13 37 37 H 1.07993 * 119.96622 * 180.02562 * 16 15 14 38 38 H 0.97003 * 120.00087 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1475 1.1518 0.0000 4 6 3.4734 1.1960 0.0005 5 17 4.3018 2.7216 -0.0002 6 6 4.1873 0.0114 0.0016 7 6 3.4771 -1.1895 0.0015 8 7 4.1463 -2.4028 0.0031 9 7 3.4222 -3.6022 0.0036 10 6 4.0730 -4.7824 0.0057 11 8 5.2887 -4.8062 0.0067 12 6 3.3104 -6.0453 0.0056 13 6 1.9140 -6.0228 0.0041 14 6 1.2073 -7.2061 0.0045 15 6 1.8755 -8.4200 0.0071 16 6 3.2553 -8.4579 0.0098 17 6 3.9836 -7.2759 0.0093 18 8 5.3384 -7.3110 0.0113 19 6 5.9191 -8.5217 0.1309 20 1 5.3109 -9.4142 0.1371 21 6 7.2977 -8.6212 0.2458 22 7 8.0384 -7.5344 0.2387 23 14 8.1025 -10.2988 0.4122 24 1 7.0569 -11.3533 0.3937 25 1 9.0402 -10.5123 -0.7193 26 1 8.8497 -10.3644 1.6937 27 7 2.1473 -1.1514 -0.0054 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 5.2673 0.0159 0.0024 32 1 5.1160 -2.4218 0.0047 33 1 2.4523 -3.5832 0.0032 34 1 1.3885 -5.0792 0.0022 35 1 0.1275 -7.1871 -0.0016 36 1 1.3134 -9.3422 0.0079 37 1 3.7688 -9.4079 0.0113 38 1 9.0026 -7.6040 0.3187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748336740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:36 Heat of formation + Delta-G solvation = 32.106361 kcal Electronic energy + Delta-G solvation = -26629.426682 eV Core-core repulsion = 22499.756108 eV Total energy + Delta-G solvation = -4129.670574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.24967 -41.36869 -40.04321 -38.12562 -38.03791 -37.51633 -34.56424 -34.31854 -34.23903 -32.55086 -30.71891 -30.57052 -29.33771 -27.38376 -25.34424 -24.32948 -24.08226 -23.13899 -21.93549 -20.15229 -19.84946 -19.39736 -18.60561 -18.01859 -17.30022 -16.80125 -16.65769 -16.36942 -16.21693 -16.18565 -16.01153 -15.76066 -15.34464 -15.29587 -14.60051 -14.55479 -14.29485 -14.10042 -13.95943 -13.55945 -13.20790 -13.04619 -12.73101 -12.59718 -12.57769 -12.51793 -12.35337 -12.09912 -11.94979 -11.51179 -11.37015 -10.91788 -10.84844 -10.65006 -10.58213 -9.91638 -9.13652 -8.92364 -8.46304 -6.16414 -0.29998 -0.09374 0.11639 0.33440 0.70878 0.80984 1.33622 1.43361 1.52673 1.92596 2.14846 2.40924 2.54041 2.85218 3.03836 3.18742 3.38403 3.45394 3.66264 3.83456 4.02558 4.07234 4.26688 4.29197 4.49751 4.58752 4.75776 4.79069 4.83373 4.92569 5.04877 5.10569 5.23507 5.41083 5.47188 5.58090 5.63680 5.69108 5.94050 6.12846 6.17218 6.45433 6.93540 6.94801 7.29853 7.76517 8.73942 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.002508 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.165342 B =11160.117358 C =13136.253739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.378 3.622 3 N -0.570 5.570 4 C 0.253 3.747 5 Cl -0.002 7.002 6 C -0.280 4.280 7 C 0.449 3.551 8 N -0.496 5.496 9 N -0.511 5.511 10 C 0.554 3.446 11 O -0.558 6.558 12 C -0.236 4.236 13 C -0.029 4.029 14 C -0.197 4.197 15 C -0.034 4.034 16 C -0.254 4.254 17 C 0.155 3.845 18 O -0.186 6.186 19 C -0.425 4.425 20 H 0.109 0.891 21 C -0.020 4.020 22 N -0.903 5.903 23 Si 1.020 2.980 24 H -0.245 1.245 25 H -0.270 1.270 26 H -0.270 1.270 27 N -0.587 5.587 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.172 0.828 32 H 0.445 0.555 33 H 0.438 0.562 34 H 0.156 0.844 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.126 0.874 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.934 12.115 -0.262 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.110 3.890 3 N -0.294 5.294 4 C 0.084 3.916 5 Cl 0.027 6.973 6 C -0.310 4.310 7 C 0.203 3.797 8 N -0.223 5.223 9 N -0.262 5.262 10 C 0.345 3.655 11 O -0.435 6.435 12 C -0.242 4.242 13 C -0.048 4.048 14 C -0.215 4.215 15 C -0.052 4.052 16 C -0.274 4.274 17 C 0.100 3.900 18 O -0.088 6.088 19 C -0.501 4.501 20 H 0.126 0.874 21 C -0.220 4.220 22 N -0.538 5.538 23 Si 0.839 3.161 24 H -0.168 1.168 25 H -0.195 1.195 26 H -0.195 1.195 27 N -0.315 5.315 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.189 0.811 32 H 0.290 0.710 33 H 0.284 0.716 34 H 0.174 0.826 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.144 0.856 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.597 12.282 -0.276 20.649 hybrid contribution 2.225 -0.390 0.037 2.260 sum -14.372 11.892 -0.239 18.655 Atomic orbital electron populations 1.20793 0.82059 1.05664 1.05522 1.23668 0.99174 0.80532 0.85622 1.67781 1.08053 1.31091 1.22429 1.21651 0.89841 0.88085 0.92040 1.98431 1.74990 1.28025 1.95835 1.21693 1.03722 0.89467 1.16167 1.18332 0.89188 0.84167 0.87971 1.43228 1.07163 0.94085 1.77783 1.44675 1.08440 0.95296 1.77775 1.18652 0.87398 0.82902 0.76538 1.90961 1.15026 1.86873 1.50638 1.18821 0.94532 0.88436 1.22439 1.21292 0.89521 1.00563 0.93389 1.21182 1.01380 0.90876 1.08069 1.21480 0.92052 1.00009 0.91701 1.21311 0.96103 0.97020 1.12936 1.19970 0.84584 0.94186 0.91299 1.84161 1.14890 1.32514 1.77270 1.22077 0.91624 0.83485 1.52906 0.87362 1.26713 0.95796 1.03927 0.95562 1.70303 1.06168 1.30809 1.46562 0.84522 0.78423 0.74788 0.78380 1.16774 1.19505 1.19538 1.67752 1.06695 1.31982 1.25055 0.87649 0.87971 0.88108 0.81075 0.71007 0.71589 0.82622 0.81637 0.82607 0.85599 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.32 71.24 0.73 -0.24 16 2 C 0.38 7.91 7.64 138.77 1.06 8.97 16 3 N -0.57 -13.05 10.33 -179.01 -1.85 -14.90 16 4 C 0.25 5.69 7.33 84.59 0.62 6.31 16 5 Cl 0.00 -0.03 29.15 -2.72 -0.08 -0.11 16 6 C -0.28 -6.31 9.84 22.60 0.22 -6.08 16 7 C 0.45 11.54 7.63 133.12 1.02 12.56 16 8 N -0.50 -14.73 6.41 -55.12 -0.35 -15.08 16 9 N -0.51 -16.39 6.24 -175.81 -1.10 -17.49 16 10 C 0.55 23.83 7.88 86.69 0.68 24.51 16 11 O -0.56 -30.62 15.00 16.90 0.25 -30.36 16 12 C -0.24 -9.67 5.89 -19.99 -0.12 -9.79 16 13 C -0.03 -0.83 9.54 22.52 0.21 -0.61 16 14 C -0.20 -4.82 10.02 22.25 0.22 -4.60 16 15 C -0.03 -0.98 10.03 22.30 0.22 -0.76 16 16 C -0.25 -10.20 9.16 22.36 0.20 -9.99 16 17 C 0.16 7.58 6.66 22.91 0.15 7.73 16 18 O -0.19 -11.31 7.84 0.81 0.01 -11.30 16 19 C -0.43 -24.71 9.49 67.93 0.64 -24.07 16 20 H 0.11 5.62 5.21 -2.91 -0.02 5.61 16 21 C -0.02 -1.17 5.49 84.85 0.47 -0.71 16 22 N -0.90 -57.12 13.67 21.62 0.30 -56.82 16 23 Si 1.02 42.85 29.55 68.60 2.03 44.88 16 24 H -0.24 -9.26 7.11 99.48 0.71 -8.55 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 N -0.59 -14.02 9.41 -185.48 -1.75 -15.77 16 28 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 32 H 0.44 13.69 8.01 -213.32 -1.71 11.98 16 33 H 0.44 11.41 6.02 -213.31 -1.28 10.13 16 34 H 0.16 3.07 6.40 -2.91 -0.02 3.05 16 35 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.13 5.12 5.64 -2.91 -0.02 5.11 16 38 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -82.33 354.03 1.99 -80.34 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -1.82 Total: 33.39 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 6.35 Total: 3.23 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -4.75 Total: -120.06 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: 0.26 Total: -41.67 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -82.33 1.99 -80.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748336740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.446 kcal (2) G-P(sol) polarization free energy of solvation -82.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds