Wall clock time and date at job start Wed Apr 1 2020 04:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35910 * 116.99864 * 2 1 4 4 C 1.38482 * 119.98248 * 359.72096 * 3 2 1 5 5 C 1.39537 * 119.78981 * 179.79400 * 4 3 2 6 6 C 1.43199 * 120.12484 * 180.23310 * 5 4 3 7 7 N 5.84230 * 81.26978 * 359.96926 * 2 1 3 8 8 C 1.39657 * 119.74971 * 0.48649 * 5 4 3 9 9 C 1.37956 * 119.96373 * 359.74505 * 8 5 4 10 10 C 1.38294 * 120.21011 * 0.02562 * 9 8 5 11 11 S 1.76191 * 119.87685 * 179.97438 * 10 9 8 12 12 O 1.42098 * 106.40343 * 228.56121 * 11 10 9 13 13 O 1.42101 * 106.40131 * 1.48581 * 11 10 9 14 14 N 1.65605 * 107.21627 * 115.02261 * 11 10 9 15 15 C 1.40564 * 120.00130 * 65.00202 * 14 11 10 16 16 C 1.40661 * 126.07479 * 45.02113 * 15 14 11 17 17 N 1.30931 * 108.40068 * 180.02562 * 16 15 14 18 18 N 1.40074 * 108.40495 * 0.02562 * 17 16 15 19 19 C 1.37310 * 126.07983 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00043 * 174.18306 * 19 18 17 21 21 C 1.38977 * 119.99819 * 354.18457 * 19 18 17 22 22 N 1.31297 * 120.00465 * 5.95857 * 21 19 18 23 23 Si 1.86799 * 119.99742 * 185.96322 * 21 19 18 24 24 H 1.48501 * 109.47228 * 94.97843 * 23 21 19 25 25 H 1.48504 * 109.47326 * 214.97836 * 23 21 19 26 26 H 1.48505 * 109.47172 * 334.97834 * 23 21 19 27 27 C 1.35641 * 126.07534 * 224.71681 * 15 14 11 28 28 H 1.08998 * 109.46699 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47463 * 59.99678 * 1 2 3 30 30 H 1.09002 * 109.46950 * 299.99557 * 1 2 3 31 31 H 1.08010 * 120.10214 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.02391 * 179.72677 * 8 5 4 33 33 H 1.07994 * 119.89850 * 180.02562 * 9 8 5 34 34 H 0.97003 * 119.99867 * 245.00277 * 14 11 10 35 35 H 1.07994 * 125.79946 * 0.04124 * 16 15 14 36 36 H 0.97001 * 120.00614 * 179.97438 * 22 21 19 37 37 H 1.07997 * 126.25155 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3721 -0.0058 5 6 1.9290 3.6133 -0.0015 6 6 1.1557 4.8185 -0.0024 7 7 0.5423 5.7746 -0.0031 8 6 3.3242 3.6757 -0.0015 9 6 4.0659 2.5125 -0.0006 10 6 3.4323 1.2832 -0.0001 11 16 4.3882 -0.1969 0.0004 12 8 3.8481 -1.0238 -1.0211 13 8 5.7507 0.2054 0.0356 14 7 4.0922 -0.9711 1.4341 15 6 2.8060 -1.4644 1.7140 16 6 1.9852 -2.1866 0.8290 17 7 0.8655 -2.4730 1.4443 18 7 0.9263 -1.9468 2.7410 19 6 -0.0546 -2.0380 3.6975 20 1 0.1319 -1.6775 4.6983 21 6 -1.2873 -2.5943 3.3777 22 7 -1.4759 -3.1384 2.1978 23 14 -2.6761 -2.5680 4.6268 24 1 -3.5422 -1.3874 4.3791 25 1 -3.4817 -3.8088 4.4976 26 1 -2.1084 -2.4867 5.9966 27 6 2.1382 -1.3335 2.8873 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 0.2127 2.3172 -0.0100 32 1 3.8223 4.6340 -0.0026 33 1 5.1447 2.5619 -0.0002 34 1 4.8063 -1.0842 2.0808 35 1 2.2360 -2.4588 -0.1856 36 1 -2.3362 -3.5270 1.9747 37 1 2.4975 -0.8329 3.7742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766362456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:44 Heat of formation + Delta-G solvation = 45.510891 kcal Electronic energy + Delta-G solvation = -28909.202946 eV Core-core repulsion = 24782.157343 eV Total energy + Delta-G solvation = -4127.045603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.32381 -39.55979 -37.86598 -36.78938 -36.35088 -35.43793 -34.53999 -33.09044 -31.85182 -30.48136 -30.17952 -27.47066 -27.10418 -24.85236 -24.55543 -22.40866 -20.78473 -20.02787 -19.50311 -19.23699 -18.13248 -17.16656 -17.01202 -16.56404 -16.14504 -15.74371 -15.54384 -15.36259 -14.61315 -14.50614 -14.19733 -14.13214 -13.93149 -13.86018 -13.26030 -13.08599 -12.97867 -12.57918 -12.52709 -12.12271 -11.85568 -11.78480 -11.72722 -11.71135 -11.46985 -11.37000 -11.32934 -10.95961 -10.92293 -10.65412 -10.56885 -10.05665 -9.50751 -9.35948 -8.85969 -8.45805 -8.09944 -7.03471 -6.70367 -4.36491 0.20115 0.83911 1.22974 2.37316 2.56901 2.85038 2.97559 3.01543 3.26886 3.36430 3.47858 3.55222 3.61363 3.75227 4.03166 4.21034 4.47120 4.67542 4.76934 4.88012 4.89404 5.17521 5.34040 5.39247 5.50546 5.63254 5.74417 5.90726 5.96610 6.10617 6.27729 6.34522 6.42791 6.45152 6.83752 7.07625 7.16319 7.30205 7.34674 7.58979 7.75492 8.14291 8.56782 9.24356 9.52372 10.25151 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010936 B = 0.004763 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.656762 B = 5876.987086 C = 7632.004737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.263 6.263 3 C 0.240 3.760 4 C -0.186 4.186 5 C 0.059 3.941 6 C 0.254 3.746 7 N -0.407 5.407 8 C -0.145 4.145 9 C 0.013 3.987 10 C -0.688 4.688 11 S 2.694 3.306 12 O -0.941 6.941 13 O -0.979 6.979 14 N -1.009 6.009 15 C -0.052 4.052 16 C -0.009 4.009 17 N -0.260 5.260 18 N -0.142 5.142 19 C -0.321 4.321 20 H 0.115 0.885 21 C 0.051 3.949 22 N -0.770 5.770 23 Si 0.929 3.071 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.264 1.264 27 C -0.060 4.060 28 H 0.130 0.870 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.156 0.844 34 H 0.411 0.589 35 H 0.169 0.831 36 H 0.275 0.725 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.772 7.681 -1.807 9.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.173 6.173 3 C 0.189 3.811 4 C -0.208 4.208 5 C 0.056 3.944 6 C -0.062 4.062 7 N -0.082 5.082 8 C -0.166 4.166 9 C -0.006 4.006 10 C -0.774 4.774 11 S 2.782 3.218 12 O -0.931 6.931 13 O -0.969 6.969 14 N -0.763 5.763 15 C -0.161 4.161 16 C -0.187 4.187 17 N -0.091 5.091 18 N 0.091 4.909 19 C -0.454 4.454 20 H 0.132 0.868 21 C -0.166 4.166 22 N -0.397 5.397 23 Si 0.753 3.247 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.188 1.188 27 C -0.213 4.213 28 H 0.148 0.852 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.173 0.827 34 H 0.246 0.754 35 H 0.186 0.814 36 H 0.085 0.915 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.974 8.030 -2.861 9.405 hybrid contribution -0.102 0.831 1.379 1.614 sum 3.873 8.861 -1.481 9.783 Atomic orbital electron populations 1.23353 0.76741 1.07052 1.00015 1.86729 1.22951 1.22834 1.84743 1.18367 0.90599 0.86044 0.86064 1.21342 1.00950 0.90652 1.07905 1.15942 0.91985 0.86712 0.99807 1.25705 0.93380 0.92959 0.94114 1.81244 1.08474 1.10798 1.07691 1.21043 0.91293 0.99454 1.04840 1.20708 1.00659 0.89484 0.89774 1.30503 1.04563 1.20630 1.21721 1.02402 0.72429 0.73195 0.73781 1.93577 1.79715 1.64688 1.55118 1.93524 1.32904 1.83596 1.86924 1.52096 1.16098 1.69178 1.38905 1.16723 0.87646 1.14362 0.97376 1.23896 0.93763 1.00607 1.00398 1.78199 1.19305 1.21265 0.90289 1.44566 1.08391 1.29322 1.08628 1.19866 0.91127 1.42654 0.91741 0.86760 1.25550 0.98856 0.95027 0.97194 1.70184 1.23841 1.26652 1.19022 0.85893 0.80140 0.78451 0.80230 1.19749 1.20096 1.18832 1.21642 0.89749 1.10006 0.99928 0.85204 0.93389 0.92528 0.83841 0.84323 0.82693 0.75383 0.81447 0.91459 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.01 101.05 0.91 1.28 16 2 O -0.26 -4.57 4.55 -29.61 -0.13 -4.71 16 3 C 0.24 3.67 6.49 -39.28 -0.25 3.42 16 4 C -0.19 -2.46 8.74 -39.01 -0.34 -2.81 16 5 C 0.06 0.70 5.73 -106.96 -0.61 0.09 16 6 C 0.25 3.16 15.33 -22.48 -0.34 2.82 16 7 N -0.41 -5.75 18.54 41.84 0.78 -4.97 16 8 C -0.14 -1.52 9.75 -39.15 -0.38 -1.90 16 9 C 0.01 0.15 9.53 -39.66 -0.38 -0.23 16 10 C -0.69 -9.96 5.89 -39.35 -0.23 -10.19 16 11 S 2.69 42.72 5.44 -107.50 -0.59 42.14 16 12 O -0.94 -17.65 15.10 -62.61 -0.95 -18.60 16 13 O -0.98 -15.85 16.95 -57.17 -0.97 -16.82 16 14 N -1.01 -16.07 5.93 32.32 0.19 -15.88 16 15 C -0.05 -1.01 5.15 -83.86 -0.43 -1.44 16 16 C -0.01 -0.19 7.70 -17.02 -0.13 -0.32 16 17 N -0.26 -6.19 8.72 30.81 0.27 -5.92 16 18 N -0.14 -3.30 3.74 -11.40 -0.04 -3.34 16 19 C -0.32 -7.45 10.24 -14.82 -0.15 -7.60 16 20 H 0.11 2.44 7.84 -52.49 -0.41 2.03 16 21 C 0.05 1.16 5.50 -17.51 -0.10 1.06 16 22 N -0.77 -18.62 11.84 55.49 0.66 -17.96 16 23 Si 0.93 17.20 29.56 -169.99 -5.02 12.18 16 24 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 25 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 26 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 27 C -0.06 -1.21 11.50 -16.35 -0.19 -1.40 16 28 H 0.13 2.46 6.80 -51.93 -0.35 2.11 16 29 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 30 H 0.06 0.91 7.67 -51.93 -0.40 0.52 16 31 H 0.14 1.72 6.29 -52.48 -0.33 1.39 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.16 1.49 7.32 -52.49 -0.38 1.11 16 34 H 0.41 5.40 8.96 -34.47 -0.31 5.09 16 35 H 0.17 3.61 6.79 -52.49 -0.36 3.25 16 36 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 37 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 335.96 15.07 5.06 5.06 Total: -1.00 -29.21 335.96 -6.30 -35.50 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -2.92 Total: 10.55 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.63 Total: -17.22 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 1.85 Total: -48.08 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -2.05 Total: -40.13 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.02 Total: 12.18 kcal Atomic # 16 Polarization: 42.72 SS G_CDS: -0.59 Total: 42.14 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.21 -6.30 -35.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766362456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.013 kcal (2) G-P(sol) polarization free energy of solvation -29.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds