Wall clock time and date at job start Wed Apr 1 2020 04:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35910 * 116.99864 * 2 1 4 4 C 1.38482 * 119.98248 * 359.72096 * 3 2 1 5 5 C 1.39537 * 119.78981 * 179.79400 * 4 3 2 6 6 C 1.43199 * 120.12484 * 180.23310 * 5 4 3 7 7 N 5.84230 * 81.26978 * 359.96926 * 2 1 3 8 8 C 1.39657 * 119.74971 * 0.48649 * 5 4 3 9 9 C 1.37956 * 119.96373 * 359.74505 * 8 5 4 10 10 C 1.38294 * 120.21011 * 0.02562 * 9 8 5 11 11 S 1.76191 * 119.87685 * 179.97438 * 10 9 8 12 12 O 1.42098 * 106.40343 * 228.56121 * 11 10 9 13 13 O 1.42101 * 106.40131 * 1.48581 * 11 10 9 14 14 N 1.65605 * 107.21627 * 115.02261 * 11 10 9 15 15 C 1.40564 * 120.00130 * 65.00202 * 14 11 10 16 16 C 1.40661 * 126.07479 * 45.02113 * 15 14 11 17 17 N 1.30931 * 108.40068 * 180.02562 * 16 15 14 18 18 N 1.40074 * 108.40495 * 0.02562 * 17 16 15 19 19 C 1.37310 * 126.07983 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00043 * 174.18306 * 19 18 17 21 21 C 1.38977 * 119.99819 * 354.18457 * 19 18 17 22 22 N 1.31297 * 120.00465 * 5.95857 * 21 19 18 23 23 Si 1.86799 * 119.99742 * 185.96322 * 21 19 18 24 24 H 1.48501 * 109.47228 * 94.97843 * 23 21 19 25 25 H 1.48504 * 109.47326 * 214.97836 * 23 21 19 26 26 H 1.48505 * 109.47172 * 334.97834 * 23 21 19 27 27 C 1.35641 * 126.07534 * 224.71681 * 15 14 11 28 28 H 1.08998 * 109.46699 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47463 * 59.99678 * 1 2 3 30 30 H 1.09002 * 109.46950 * 299.99557 * 1 2 3 31 31 H 1.08010 * 120.10214 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.02391 * 179.72677 * 8 5 4 33 33 H 1.07994 * 119.89850 * 180.02562 * 9 8 5 34 34 H 0.97003 * 119.99867 * 245.00277 * 14 11 10 35 35 H 1.07994 * 125.79946 * 0.04124 * 16 15 14 36 36 H 0.97001 * 120.00614 * 179.97438 * 22 21 19 37 37 H 1.07997 * 126.25155 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3721 -0.0058 5 6 1.9290 3.6133 -0.0015 6 6 1.1557 4.8185 -0.0024 7 7 0.5423 5.7746 -0.0031 8 6 3.3242 3.6757 -0.0015 9 6 4.0659 2.5125 -0.0006 10 6 3.4323 1.2832 -0.0001 11 16 4.3882 -0.1969 0.0004 12 8 3.8481 -1.0238 -1.0211 13 8 5.7507 0.2054 0.0356 14 7 4.0922 -0.9711 1.4341 15 6 2.8060 -1.4644 1.7140 16 6 1.9852 -2.1866 0.8290 17 7 0.8655 -2.4730 1.4443 18 7 0.9263 -1.9468 2.7410 19 6 -0.0546 -2.0380 3.6975 20 1 0.1319 -1.6775 4.6983 21 6 -1.2873 -2.5943 3.3777 22 7 -1.4759 -3.1384 2.1978 23 14 -2.6761 -2.5680 4.6268 24 1 -3.5422 -1.3874 4.3791 25 1 -3.4817 -3.8088 4.4976 26 1 -2.1084 -2.4867 5.9966 27 6 2.1382 -1.3335 2.8873 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 0.2127 2.3172 -0.0100 32 1 3.8223 4.6340 -0.0026 33 1 5.1447 2.5619 -0.0002 34 1 4.8063 -1.0842 2.0808 35 1 2.2360 -2.4588 -0.1856 36 1 -2.3362 -3.5270 1.9747 37 1 2.4975 -0.8329 3.7742 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766362456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:44 Heat of formation + Delta-G solvation = 26.235098 kcal Electronic energy + Delta-G solvation = -28910.038807 eV Core-core repulsion = 24782.157343 eV Total energy + Delta-G solvation = -4127.881464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53517 -41.08669 -38.99732 -38.09620 -37.43562 -36.80230 -36.05910 -34.68274 -32.89888 -32.04901 -31.34014 -29.06861 -28.34619 -26.52398 -25.63258 -23.44551 -22.44968 -21.54914 -20.59721 -20.56876 -19.57392 -18.44974 -18.39044 -17.74048 -17.39938 -17.16990 -16.99973 -16.67778 -15.97994 -15.63105 -15.37754 -15.35860 -15.16629 -15.00790 -14.79084 -14.60446 -14.04048 -13.71362 -13.68937 -13.56284 -13.40241 -13.19103 -13.09133 -12.92606 -12.86291 -12.73003 -12.63511 -12.52938 -12.11003 -12.06598 -11.86047 -11.48213 -10.99843 -10.54347 -10.48613 -9.84836 -9.48200 -8.63185 -8.37208 -6.10680 -0.84660 -0.42681 0.23965 1.35493 1.37907 1.45912 1.53405 1.59060 1.84106 2.06252 2.13608 2.24949 2.51846 2.56862 2.65113 2.79092 3.02978 3.18939 3.42725 3.77260 3.90666 4.02645 4.24953 4.34408 4.36274 4.52739 4.52974 4.70850 4.75975 4.90162 4.91968 4.98988 5.04666 5.15176 5.43061 5.48862 5.66723 6.06979 6.16627 6.18497 6.27834 6.52819 6.91456 7.59226 7.84380 8.60319 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010936 B = 0.004763 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.656762 B = 5876.987086 C = 7632.004737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.286 6.286 3 C 0.216 3.784 4 C -0.189 4.189 5 C 0.063 3.937 6 C 0.275 3.725 7 N -0.434 5.434 8 C -0.122 4.122 9 C 0.017 3.983 10 C -0.695 4.695 11 S 2.712 3.288 12 O -0.975 6.975 13 O -0.979 6.979 14 N -1.007 6.007 15 C -0.034 4.034 16 C -0.017 4.017 17 N -0.288 5.288 18 N -0.164 5.164 19 C -0.349 4.349 20 H 0.128 0.872 21 C 0.011 3.989 22 N -0.813 5.813 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.253 1.253 27 C -0.058 4.058 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.150 0.850 32 H 0.178 0.822 33 H 0.182 0.818 34 H 0.425 0.575 35 H 0.161 0.839 36 H 0.274 0.726 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 10.111 -0.980 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.197 6.197 3 C 0.166 3.834 4 C -0.211 4.211 5 C 0.060 3.940 6 C -0.040 4.040 7 N -0.109 5.109 8 C -0.144 4.144 9 C -0.002 4.002 10 C -0.784 4.784 11 S 2.803 3.197 12 O -0.965 6.965 13 O -0.969 6.969 14 N -0.762 5.762 15 C -0.142 4.142 16 C -0.195 4.195 17 N -0.119 5.119 18 N 0.068 4.932 19 C -0.480 4.480 20 H 0.145 0.855 21 C -0.202 4.202 22 N -0.441 5.441 23 Si 0.820 3.180 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.177 1.177 27 C -0.211 4.211 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.167 0.833 32 H 0.196 0.804 33 H 0.199 0.801 34 H 0.262 0.738 35 H 0.178 0.822 36 H 0.084 0.916 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.356 10.437 -2.007 11.901 hybrid contribution -0.308 0.231 1.021 1.091 sum 5.048 10.668 -0.986 11.843 Atomic orbital electron populations 1.23151 0.76860 1.05249 1.01036 1.86644 1.23029 1.24390 1.85630 1.18520 0.91057 0.85906 0.87912 1.21385 1.01332 0.90573 1.07812 1.15978 0.92666 0.85803 0.99573 1.25601 0.92705 0.92511 0.93222 1.81283 1.09190 1.11808 1.08661 1.21460 0.90458 1.00709 1.01729 1.21079 1.01992 0.88560 0.88612 1.30297 1.04021 1.20785 1.23271 1.01458 0.72175 0.73245 0.72849 1.93545 1.80278 1.66283 1.56356 1.93525 1.32872 1.83676 1.86804 1.51997 1.15208 1.69786 1.39215 1.16600 0.88303 1.12955 0.96386 1.23860 0.94044 1.01246 1.00362 1.78141 1.20364 1.22215 0.91160 1.44689 1.09417 1.30637 1.08499 1.20325 0.91770 1.43504 0.92443 0.85470 1.26408 1.00808 0.94248 0.98732 1.70319 1.24376 1.28318 1.21038 0.84854 0.76918 0.77976 0.78279 1.19540 1.20544 1.17673 1.22153 0.88907 1.09060 1.00985 0.88443 0.90654 0.93086 0.83262 0.80436 0.80120 0.73763 0.82157 0.91575 0.81242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 9.01 113.37 1.02 2.08 16 2 O -0.29 -10.08 4.55 -82.82 -0.38 -10.46 16 3 C 0.22 6.37 6.49 22.47 0.15 6.51 16 4 C -0.19 -4.67 8.74 22.64 0.20 -4.47 16 5 C 0.06 1.31 5.73 -21.38 -0.12 1.18 16 6 C 0.28 6.08 15.33 88.33 1.35 7.44 16 7 N -0.43 -11.31 18.54 19.00 0.35 -10.96 16 8 C -0.12 -2.01 9.75 22.55 0.22 -1.79 16 9 C 0.02 0.32 9.53 22.22 0.21 0.53 16 10 C -0.70 -18.66 5.89 22.42 0.13 -18.52 16 11 S 2.71 82.44 5.44 -56.49 -0.31 82.14 16 12 O -0.97 -36.61 15.10 -122.80 -1.85 -38.47 16 13 O -0.98 -29.31 16.95 -128.00 -2.17 -31.48 16 14 N -1.01 -30.91 5.93 -51.65 -0.31 -31.21 16 15 C -0.03 -1.30 5.15 37.73 0.19 -1.11 16 16 C -0.02 -0.75 7.70 85.42 0.66 -0.09 16 17 N -0.29 -14.25 8.72 -56.45 -0.49 -14.74 16 18 N -0.16 -7.76 3.74 -189.98 -0.71 -8.47 16 19 C -0.35 -16.40 10.24 84.01 0.86 -15.54 16 20 H 0.13 5.39 7.84 -2.91 -0.02 5.37 16 21 C 0.01 0.51 5.50 84.95 0.47 0.97 16 22 N -0.81 -40.89 11.84 21.66 0.26 -40.64 16 23 Si 1.00 35.58 29.56 68.60 2.03 37.61 16 24 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 25 H -0.28 -10.05 7.11 99.48 0.71 -9.34 16 26 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 27 C -0.06 -2.34 11.50 83.35 0.96 -1.38 16 28 H 0.10 3.96 6.80 -2.39 -0.02 3.94 16 29 H 0.08 2.01 7.65 -2.39 -0.02 1.99 16 30 H 0.05 1.71 7.67 -2.39 -0.02 1.69 16 31 H 0.15 3.43 6.29 -2.91 -0.02 3.41 16 32 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.18 2.61 7.32 -2.91 -0.02 2.59 16 34 H 0.42 10.41 8.96 -96.74 -0.87 9.54 16 35 H 0.16 7.26 6.79 -2.91 -0.02 7.24 16 36 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 37 H 0.17 5.73 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -64.53 335.96 3.02 -61.51 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.30 Total: 29.36 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 6.30 Total: -24.19 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -0.90 Total: -106.02 kcal Atomic # 8 Polarization: -76.01 SS G_CDS: -4.40 Total: -80.41 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Atomic # 16 Polarization: 82.44 SS G_CDS: -0.31 Total: 82.14 kcal Total: -64.53 3.02 -61.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766362456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.748 kcal (2) G-P(sol) polarization free energy of solvation -64.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds